Experiment: Betaine (C) 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00170 and PFR28_00171 are separated by 2 nucleotides PFR28_00171 and PFR28_00172 are separated by 12 nucleotides PFR28_00172 and PFR28_00173 are separated by 76 nucleotides
PFR28_00170: PFR28_00170 - RNase adapter protein RapZ, at 196,347 to 197,204
_00170
PFR28_00171: PFR28_00171 - Nitrogen regulatory protein, at 197,207 to 197,671
_00171
PFR28_00172: PFR28_00172 - Ribosome hibernation promoting factor, at 197,684 to 197,992
_00172
PFR28_00173: PFR28_00173 - RNA polymerase sigma-54 factor, at 198,069 to 199,541
_00173
Position (kb) 197
198 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 196.766 kb on - strand, within PFR28_00170 at 197.125 kb on + strand at 197.125 kb on + strand at 197.126 kb on - strand at 197.126 kb on - strand at 197.128 kb on + strand at 197.128 kb on + strand at 197.128 kb on + strand at 197.129 kb on - strand at 197.129 kb on - strand at 197.165 kb on + strand at 197.729 kb on - strand, within PFR28_00172 at 197.782 kb on - strand, within PFR28_00172 at 197.782 kb on - strand, within PFR28_00172 at 197.782 kb on - strand, within PFR28_00172 at 197.782 kb on - strand, within PFR28_00172 at 197.782 kb on - strand, within PFR28_00172 at 197.782 kb on - strand, within PFR28_00172 at 197.782 kb on - strand, within PFR28_00172 at 197.782 kb on - strand, within PFR28_00172 at 197.782 kb on - strand, within PFR28_00172 at 197.782 kb on - strand, within PFR28_00172 at 197.782 kb on - strand, within PFR28_00172 at 197.782 kb on - strand, within PFR28_00172 at 197.782 kb on - strand, within PFR28_00172 at 197.782 kb on - strand, within PFR28_00172 at 197.782 kb on - strand, within PFR28_00172 at 197.782 kb on - strand, within PFR28_00172 at 197.782 kb on - strand, within PFR28_00172 at 197.782 kb on - strand, within PFR28_00172 at 197.782 kb on - strand, within PFR28_00172 at 197.782 kb on - strand, within PFR28_00172 at 197.782 kb on - strand, within PFR28_00172 at 197.782 kb on - strand, within PFR28_00172 at 197.782 kb on - strand, within PFR28_00172 at 197.782 kb on - strand, within PFR28_00172 at 197.782 kb on - strand, within PFR28_00172 at 197.782 kb on - strand, within PFR28_00172 at 197.782 kb on - strand, within PFR28_00172 at 197.782 kb on - strand, within PFR28_00172 at 197.782 kb on - strand, within PFR28_00172 at 197.938 kb on - strand, within PFR28_00172 at 197.938 kb on - strand, within PFR28_00172 at 197.993 kb on - strand at 197.993 kb on - strand at 197.993 kb on - strand at 197.993 kb on - strand at 197.993 kb on - strand at 197.993 kb on - strand at 197.993 kb on - strand at 197.993 kb on - strand at 198.020 kb on - strand at 198.020 kb on - strand at 198.071 kb on - strand at 198.071 kb on - strand at 198.071 kb on - strand at 198.071 kb on - strand at 198.071 kb on - strand at 198.071 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Betaine (C) 2.5 mM remove 196,766 - PFR28_00170 0.49 -0.4 197,125 + -1.5 197,125 + -0.4 197,126 - -2.5 197,126 - -0.9 197,128 + -3.9 197,128 + -2.2 197,128 + -0.3 197,129 - -0.3 197,129 - -3.3 197,165 + +0.4 197,729 - PFR28_00172 0.15 +0.1 197,782 - PFR28_00172 0.32 +0.2 197,782 - PFR28_00172 0.32 -1.0 197,782 - PFR28_00172 0.32 -0.1 197,782 - PFR28_00172 0.32 +0.0 197,782 - PFR28_00172 0.32 -0.7 197,782 - PFR28_00172 0.32 -2.9 197,782 - PFR28_00172 0.32 -0.4 197,782 - PFR28_00172 0.32 -1.0 197,782 - PFR28_00172 0.32 +0.4 197,782 - PFR28_00172 0.32 -0.4 197,782 - PFR28_00172 0.32 -2.1 197,782 - PFR28_00172 0.32 +0.3 197,782 - PFR28_00172 0.32 -0.7 197,782 - PFR28_00172 0.32 -1.5 197,782 - PFR28_00172 0.32 -0.3 197,782 - PFR28_00172 0.32 -0.4 197,782 - PFR28_00172 0.32 -2.4 197,782 - PFR28_00172 0.32 -0.3 197,782 - PFR28_00172 0.32 -3.4 197,782 - PFR28_00172 0.32 -4.5 197,782 - PFR28_00172 0.32 -1.9 197,782 - PFR28_00172 0.32 +0.2 197,782 - PFR28_00172 0.32 -0.8 197,782 - PFR28_00172 0.32 -0.6 197,782 - PFR28_00172 0.32 +0.3 197,782 - PFR28_00172 0.32 +0.4 197,782 - PFR28_00172 0.32 +0.3 197,782 - PFR28_00172 0.32 -3.9 197,782 - PFR28_00172 0.32 -0.1 197,938 - PFR28_00172 0.82 -2.8 197,938 - PFR28_00172 0.82 -3.4 197,993 - -0.4 197,993 - -4.3 197,993 - -0.9 197,993 - -0.9 197,993 - -1.4 197,993 - -0.4 197,993 - +0.7 197,993 - -0.8 198,020 - -0.5 198,020 - +0.7 198,071 - -0.6 198,071 - -0.8 198,071 - -1.3 198,071 - +0.4 198,071 - -3.4 198,071 - +1.4
Or see this region's nucleotide sequence