Experiment: D-(-)-lyxose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3877 and Atu3878 overlap by 4 nucleotides Atu3878 and Atu3879 are separated by 80 nucleotides
Atu3877: Atu3877 - aldo/keto reductase, at 972,021 to 973,019
Atu3877
Atu3878: Atu3878 - transcriptional regulator, at 973,016 to 973,951
Atu3878
Atu3879: Atu3879 - sugar ABC transporter permease, at 974,032 to 975,033
Atu3879
Position (kb)
973
974 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 972.053 kb on + strand at 972.066 kb on - strand at 972.079 kb on - strand at 972.125 kb on + strand, within Atu3877 at 972.185 kb on - strand, within Atu3877 at 972.187 kb on + strand, within Atu3877 at 972.195 kb on - strand, within Atu3877 at 972.241 kb on + strand, within Atu3877 at 972.241 kb on + strand, within Atu3877 at 972.249 kb on - strand, within Atu3877 at 972.316 kb on - strand, within Atu3877 at 972.334 kb on + strand, within Atu3877 at 972.344 kb on + strand, within Atu3877 at 972.414 kb on + strand, within Atu3877 at 972.544 kb on + strand, within Atu3877 at 972.552 kb on - strand, within Atu3877 at 972.552 kb on - strand, within Atu3877 at 972.613 kb on - strand, within Atu3877 at 972.615 kb on - strand, within Atu3877 at 972.639 kb on - strand, within Atu3877 at 972.642 kb on + strand, within Atu3877 at 972.659 kb on - strand, within Atu3877 at 972.677 kb on - strand, within Atu3877 at 972.742 kb on + strand, within Atu3877 at 972.783 kb on - strand, within Atu3877 at 972.825 kb on + strand, within Atu3877 at 972.837 kb on + strand, within Atu3877 at 972.837 kb on + strand, within Atu3877 at 972.837 kb on + strand, within Atu3877 at 972.946 kb on + strand at 972.946 kb on - strand at 972.953 kb on + strand at 972.954 kb on + strand at 973.072 kb on + strand at 973.146 kb on + strand, within Atu3878 at 973.146 kb on + strand, within Atu3878 at 973.180 kb on + strand, within Atu3878 at 973.180 kb on + strand, within Atu3878 at 973.202 kb on + strand, within Atu3878 at 973.246 kb on - strand, within Atu3878 at 973.246 kb on - strand, within Atu3878 at 973.339 kb on + strand, within Atu3878 at 973.386 kb on + strand, within Atu3878 at 973.388 kb on + strand, within Atu3878 at 973.389 kb on - strand, within Atu3878 at 973.396 kb on - strand, within Atu3878 at 973.421 kb on - strand, within Atu3878 at 973.435 kb on + strand, within Atu3878 at 973.443 kb on - strand, within Atu3878 at 973.445 kb on - strand, within Atu3878 at 973.445 kb on - strand, within Atu3878 at 973.449 kb on + strand, within Atu3878 at 973.479 kb on - strand, within Atu3878 at 973.484 kb on - strand, within Atu3878 at 973.527 kb on + strand, within Atu3878 at 973.527 kb on + strand, within Atu3878 at 973.535 kb on - strand, within Atu3878 at 973.535 kb on - strand, within Atu3878 at 973.538 kb on + strand, within Atu3878 at 973.721 kb on + strand, within Atu3878 at 973.729 kb on + strand, within Atu3878 at 973.737 kb on - strand, within Atu3878 at 973.801 kb on + strand, within Atu3878 at 973.944 kb on + strand at 973.952 kb on - strand at 974.009 kb on + strand at 974.028 kb on - strand at 974.050 kb on - strand at 974.163 kb on - strand, within Atu3879 at 974.218 kb on + strand, within Atu3879 at 974.234 kb on + strand, within Atu3879 at 974.255 kb on - strand, within Atu3879 at 974.315 kb on + strand, within Atu3879 at 974.317 kb on + strand, within Atu3879 at 974.325 kb on - strand, within Atu3879 at 974.387 kb on + strand, within Atu3879 at 974.387 kb on + strand, within Atu3879 at 974.405 kb on + strand, within Atu3879 at 974.413 kb on - strand, within Atu3879 at 974.415 kb on - strand, within Atu3879 at 974.415 kb on - strand, within Atu3879 at 974.453 kb on + strand, within Atu3879 at 974.457 kb on - strand, within Atu3879 at 974.508 kb on - strand, within Atu3879 at 974.546 kb on - strand, within Atu3879 at 974.551 kb on - strand, within Atu3879 at 974.588 kb on - strand, within Atu3879 at 974.609 kb on - strand, within Atu3879 at 974.647 kb on + strand, within Atu3879 at 974.715 kb on + strand, within Atu3879 at 974.731 kb on - strand, within Atu3879 at 974.731 kb on - strand, within Atu3879 at 974.828 kb on - strand, within Atu3879 at 974.855 kb on + strand, within Atu3879 at 974.948 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-(-)-lyxose (C) remove 972,053 + -0.4 972,066 - -0.6 972,079 - -0.2 972,125 + Atu3877 0.10 +0.0 972,185 - Atu3877 0.16 +0.7 972,187 + Atu3877 0.17 +0.0 972,195 - Atu3877 0.17 -0.1 972,241 + Atu3877 0.22 -0.2 972,241 + Atu3877 0.22 +0.6 972,249 - Atu3877 0.23 -0.4 972,316 - Atu3877 0.30 +0.1 972,334 + Atu3877 0.31 +1.0 972,344 + Atu3877 0.32 +0.4 972,414 + Atu3877 0.39 -0.0 972,544 + Atu3877 0.52 +0.5 972,552 - Atu3877 0.53 -0.9 972,552 - Atu3877 0.53 +0.0 972,613 - Atu3877 0.59 -0.6 972,615 - Atu3877 0.59 -0.2 972,639 - Atu3877 0.62 -0.1 972,642 + Atu3877 0.62 -0.7 972,659 - Atu3877 0.64 +0.1 972,677 - Atu3877 0.66 -0.1 972,742 + Atu3877 0.72 +0.0 972,783 - Atu3877 0.76 +0.6 972,825 + Atu3877 0.80 -0.0 972,837 + Atu3877 0.82 +0.5 972,837 + Atu3877 0.82 +0.3 972,837 + Atu3877 0.82 -0.2 972,946 + -0.0 972,946 - -0.1 972,953 + +0.2 972,954 + -0.1 973,072 + -0.7 973,146 + Atu3878 0.14 -1.3 973,146 + Atu3878 0.14 -1.3 973,180 + Atu3878 0.18 -1.5 973,180 + Atu3878 0.18 -0.6 973,202 + Atu3878 0.20 +0.7 973,246 - Atu3878 0.25 -0.3 973,246 - Atu3878 0.25 -3.1 973,339 + Atu3878 0.35 -1.7 973,386 + Atu3878 0.40 -2.0 973,388 + Atu3878 0.40 -1.2 973,389 - Atu3878 0.40 -1.3 973,396 - Atu3878 0.41 -2.8 973,421 - Atu3878 0.43 -1.6 973,435 + Atu3878 0.45 -2.1 973,443 - Atu3878 0.46 -1.5 973,445 - Atu3878 0.46 -2.8 973,445 - Atu3878 0.46 -2.3 973,449 + Atu3878 0.46 -3.1 973,479 - Atu3878 0.49 -1.3 973,484 - Atu3878 0.50 -1.8 973,527 + Atu3878 0.55 -2.7 973,527 + Atu3878 0.55 -1.6 973,535 - Atu3878 0.55 -0.9 973,535 - Atu3878 0.55 +0.0 973,538 + Atu3878 0.56 -1.5 973,721 + Atu3878 0.75 -0.7 973,729 + Atu3878 0.76 -1.0 973,737 - Atu3878 0.77 -2.2 973,801 + Atu3878 0.84 -2.5 973,944 + -0.8 973,952 - -1.4 974,009 + +1.7 974,028 - +1.0 974,050 - +1.0 974,163 - Atu3879 0.13 +0.3 974,218 + Atu3879 0.19 -0.1 974,234 + Atu3879 0.20 -0.6 974,255 - Atu3879 0.22 -0.0 974,315 + Atu3879 0.28 -0.8 974,317 + Atu3879 0.28 +0.0 974,325 - Atu3879 0.29 -0.3 974,387 + Atu3879 0.35 +0.0 974,387 + Atu3879 0.35 +0.6 974,405 + Atu3879 0.37 -0.9 974,413 - Atu3879 0.38 -0.1 974,415 - Atu3879 0.38 +0.0 974,415 - Atu3879 0.38 +0.1 974,453 + Atu3879 0.42 -0.7 974,457 - Atu3879 0.42 -0.2 974,508 - Atu3879 0.48 -0.1 974,546 - Atu3879 0.51 -1.1 974,551 - Atu3879 0.52 +0.0 974,588 - Atu3879 0.55 -0.5 974,609 - Atu3879 0.58 +0.5 974,647 + Atu3879 0.61 -0.0 974,715 + Atu3879 0.68 -0.3 974,731 - Atu3879 0.70 +0.5 974,731 - Atu3879 0.70 -0.4 974,828 - Atu3879 0.79 +2.2 974,855 + Atu3879 0.82 +0.1 974,948 - -0.2
Or see this region's nucleotide sequence