Strain Fitness in Agrobacterium fabrum C58 around Atu3878

Experiment: D-(-)-lyxose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3877 and Atu3878 overlap by 4 nucleotidesAtu3878 and Atu3879 are separated by 80 nucleotides Atu3877: Atu3877 - aldo/keto reductase, at 972,021 to 973,019 Atu3877 Atu3878: Atu3878 - transcriptional regulator, at 973,016 to 973,951 Atu3878 Atu3879: Atu3879 - sugar ABC transporter permease, at 974,032 to 975,033 Atu3879 Position (kb) 973 974Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 972.053 kb on + strandat 972.066 kb on - strandat 972.079 kb on - strandat 972.125 kb on + strand, within Atu3877at 972.185 kb on - strand, within Atu3877at 972.187 kb on + strand, within Atu3877at 972.195 kb on - strand, within Atu3877at 972.241 kb on + strand, within Atu3877at 972.241 kb on + strand, within Atu3877at 972.249 kb on - strand, within Atu3877at 972.316 kb on - strand, within Atu3877at 972.334 kb on + strand, within Atu3877at 972.344 kb on + strand, within Atu3877at 972.414 kb on + strand, within Atu3877at 972.544 kb on + strand, within Atu3877at 972.552 kb on - strand, within Atu3877at 972.552 kb on - strand, within Atu3877at 972.613 kb on - strand, within Atu3877at 972.615 kb on - strand, within Atu3877at 972.639 kb on - strand, within Atu3877at 972.642 kb on + strand, within Atu3877at 972.659 kb on - strand, within Atu3877at 972.677 kb on - strand, within Atu3877at 972.742 kb on + strand, within Atu3877at 972.783 kb on - strand, within Atu3877at 972.825 kb on + strand, within Atu3877at 972.837 kb on + strand, within Atu3877at 972.837 kb on + strand, within Atu3877at 972.837 kb on + strand, within Atu3877at 972.946 kb on + strandat 972.946 kb on - strandat 972.953 kb on + strandat 972.954 kb on + strandat 973.072 kb on + strandat 973.146 kb on + strand, within Atu3878at 973.146 kb on + strand, within Atu3878at 973.180 kb on + strand, within Atu3878at 973.180 kb on + strand, within Atu3878at 973.202 kb on + strand, within Atu3878at 973.246 kb on - strand, within Atu3878at 973.246 kb on - strand, within Atu3878at 973.339 kb on + strand, within Atu3878at 973.386 kb on + strand, within Atu3878at 973.388 kb on + strand, within Atu3878at 973.389 kb on - strand, within Atu3878at 973.396 kb on - strand, within Atu3878at 973.421 kb on - strand, within Atu3878at 973.435 kb on + strand, within Atu3878at 973.443 kb on - strand, within Atu3878at 973.445 kb on - strand, within Atu3878at 973.445 kb on - strand, within Atu3878at 973.449 kb on + strand, within Atu3878at 973.479 kb on - strand, within Atu3878at 973.484 kb on - strand, within Atu3878at 973.527 kb on + strand, within Atu3878at 973.527 kb on + strand, within Atu3878at 973.535 kb on - strand, within Atu3878at 973.535 kb on - strand, within Atu3878at 973.538 kb on + strand, within Atu3878at 973.721 kb on + strand, within Atu3878at 973.729 kb on + strand, within Atu3878at 973.737 kb on - strand, within Atu3878at 973.801 kb on + strand, within Atu3878at 973.944 kb on + strandat 973.952 kb on - strandat 974.009 kb on + strandat 974.028 kb on - strandat 974.050 kb on - strandat 974.163 kb on - strand, within Atu3879at 974.218 kb on + strand, within Atu3879at 974.234 kb on + strand, within Atu3879at 974.255 kb on - strand, within Atu3879at 974.315 kb on + strand, within Atu3879at 974.317 kb on + strand, within Atu3879at 974.325 kb on - strand, within Atu3879at 974.387 kb on + strand, within Atu3879at 974.387 kb on + strand, within Atu3879at 974.405 kb on + strand, within Atu3879at 974.413 kb on - strand, within Atu3879at 974.415 kb on - strand, within Atu3879at 974.415 kb on - strand, within Atu3879at 974.453 kb on + strand, within Atu3879at 974.457 kb on - strand, within Atu3879at 974.508 kb on - strand, within Atu3879at 974.546 kb on - strand, within Atu3879at 974.551 kb on - strand, within Atu3879at 974.588 kb on - strand, within Atu3879at 974.609 kb on - strand, within Atu3879at 974.647 kb on + strand, within Atu3879at 974.715 kb on + strand, within Atu3879at 974.731 kb on - strand, within Atu3879at 974.731 kb on - strand, within Atu3879at 974.828 kb on - strand, within Atu3879at 974.855 kb on + strand, within Atu3879at 974.948 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-(-)-lyxose (C)
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972,053 + -0.4
972,066 - -0.6
972,079 - -0.2
972,125 + Atu3877 0.10 +0.0
972,185 - Atu3877 0.16 +0.7
972,187 + Atu3877 0.17 +0.0
972,195 - Atu3877 0.17 -0.1
972,241 + Atu3877 0.22 -0.2
972,241 + Atu3877 0.22 +0.6
972,249 - Atu3877 0.23 -0.4
972,316 - Atu3877 0.30 +0.1
972,334 + Atu3877 0.31 +1.0
972,344 + Atu3877 0.32 +0.4
972,414 + Atu3877 0.39 -0.0
972,544 + Atu3877 0.52 +0.5
972,552 - Atu3877 0.53 -0.9
972,552 - Atu3877 0.53 +0.0
972,613 - Atu3877 0.59 -0.6
972,615 - Atu3877 0.59 -0.2
972,639 - Atu3877 0.62 -0.1
972,642 + Atu3877 0.62 -0.7
972,659 - Atu3877 0.64 +0.1
972,677 - Atu3877 0.66 -0.1
972,742 + Atu3877 0.72 +0.0
972,783 - Atu3877 0.76 +0.6
972,825 + Atu3877 0.80 -0.0
972,837 + Atu3877 0.82 +0.5
972,837 + Atu3877 0.82 +0.3
972,837 + Atu3877 0.82 -0.2
972,946 + -0.0
972,946 - -0.1
972,953 + +0.2
972,954 + -0.1
973,072 + -0.7
973,146 + Atu3878 0.14 -1.3
973,146 + Atu3878 0.14 -1.3
973,180 + Atu3878 0.18 -1.5
973,180 + Atu3878 0.18 -0.6
973,202 + Atu3878 0.20 +0.7
973,246 - Atu3878 0.25 -0.3
973,246 - Atu3878 0.25 -3.1
973,339 + Atu3878 0.35 -1.7
973,386 + Atu3878 0.40 -2.0
973,388 + Atu3878 0.40 -1.2
973,389 - Atu3878 0.40 -1.3
973,396 - Atu3878 0.41 -2.8
973,421 - Atu3878 0.43 -1.6
973,435 + Atu3878 0.45 -2.1
973,443 - Atu3878 0.46 -1.5
973,445 - Atu3878 0.46 -2.8
973,445 - Atu3878 0.46 -2.3
973,449 + Atu3878 0.46 -3.1
973,479 - Atu3878 0.49 -1.3
973,484 - Atu3878 0.50 -1.8
973,527 + Atu3878 0.55 -2.7
973,527 + Atu3878 0.55 -1.6
973,535 - Atu3878 0.55 -0.9
973,535 - Atu3878 0.55 +0.0
973,538 + Atu3878 0.56 -1.5
973,721 + Atu3878 0.75 -0.7
973,729 + Atu3878 0.76 -1.0
973,737 - Atu3878 0.77 -2.2
973,801 + Atu3878 0.84 -2.5
973,944 + -0.8
973,952 - -1.4
974,009 + +1.7
974,028 - +1.0
974,050 - +1.0
974,163 - Atu3879 0.13 +0.3
974,218 + Atu3879 0.19 -0.1
974,234 + Atu3879 0.20 -0.6
974,255 - Atu3879 0.22 -0.0
974,315 + Atu3879 0.28 -0.8
974,317 + Atu3879 0.28 +0.0
974,325 - Atu3879 0.29 -0.3
974,387 + Atu3879 0.35 +0.0
974,387 + Atu3879 0.35 +0.6
974,405 + Atu3879 0.37 -0.9
974,413 - Atu3879 0.38 -0.1
974,415 - Atu3879 0.38 +0.0
974,415 - Atu3879 0.38 +0.1
974,453 + Atu3879 0.42 -0.7
974,457 - Atu3879 0.42 -0.2
974,508 - Atu3879 0.48 -0.1
974,546 - Atu3879 0.51 -1.1
974,551 - Atu3879 0.52 +0.0
974,588 - Atu3879 0.55 -0.5
974,609 - Atu3879 0.58 +0.5
974,647 + Atu3879 0.61 -0.0
974,715 + Atu3879 0.68 -0.3
974,731 - Atu3879 0.70 +0.5
974,731 - Atu3879 0.70 -0.4
974,828 - Atu3879 0.79 +2.2
974,855 + Atu3879 0.82 +0.1
974,948 - -0.2

Or see this region's nucleotide sequence