Experiment: 2-Furfuraldehyde 0.125 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt osmC and ddpF are separated by 55 nucleotides ddpF and ddpD overlap by 8 nucleotides ddpD and ddpC overlap by 4 nucleotides ddpC and ddpB overlap by 4 nucleotides
b1482: osmC - osmotically inducible, stress-inducible membrane protein (NCBI), at 1,554,649 to 1,555,080
osmC
b1483: ddpF - D-ala-D-ala transporter subunit (NCBI), at 1,555,136 to 1,556,062
ddpF
b1484: ddpD - D-ala-D-ala transporter subunit (NCBI), at 1,556,055 to 1,557,041
ddpD
b1485: ddpC - D-ala-D-ala transporter subunit (NCBI), at 1,557,038 to 1,557,934
ddpC
b1486: ddpB - D-ala-D-ala transporter subunit (NCBI), at 1,557,931 to 1,558,953
ddpB
Position (kb)
1556
1557
1558 Strain fitness (log2 ratio)
-1
0
1
2 at 1555.296 kb on + strand, within ddpF at 1555.384 kb on - strand, within ddpF at 1555.384 kb on - strand, within ddpF at 1555.388 kb on + strand, within ddpF at 1555.388 kb on + strand, within ddpF at 1555.544 kb on - strand, within ddpF at 1555.722 kb on + strand, within ddpF at 1555.722 kb on + strand, within ddpF at 1555.874 kb on - strand, within ddpF at 1555.874 kb on - strand, within ddpF at 1556.155 kb on - strand, within ddpD at 1556.213 kb on - strand, within ddpD at 1556.230 kb on + strand, within ddpD at 1556.230 kb on + strand, within ddpD at 1556.320 kb on - strand, within ddpD at 1556.320 kb on - strand, within ddpD at 1556.375 kb on + strand, within ddpD at 1556.389 kb on + strand, within ddpD at 1556.723 kb on + strand, within ddpD at 1556.725 kb on - strand, within ddpD at 1557.386 kb on - strand, within ddpC at 1557.505 kb on + strand, within ddpC at 1557.505 kb on + strand, within ddpC at 1557.567 kb on + strand, within ddpC at 1557.628 kb on + strand, within ddpC at 1557.835 kb on + strand, within ddpC at 1557.835 kb on + strand, within ddpC at 1558.000 kb on - strand at 1558.010 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 2-Furfuraldehyde 0.125 vol% remove 1,555,296 + ddpF b1483 0.17 +1.1 1,555,384 - ddpF b1483 0.27 +0.1 1,555,384 - ddpF b1483 0.27 -0.2 1,555,388 + ddpF b1483 0.27 -0.3 1,555,388 + ddpF b1483 0.27 +0.2 1,555,544 - ddpF b1483 0.44 +0.6 1,555,722 + ddpF b1483 0.63 +0.5 1,555,722 + ddpF b1483 0.63 -0.1 1,555,874 - ddpF b1483 0.80 +1.2 1,555,874 - ddpF b1483 0.80 +1.7 1,556,155 - ddpD b1484 0.10 -0.5 1,556,213 - ddpD b1484 0.16 -1.3 1,556,230 + ddpD b1484 0.18 +0.3 1,556,230 + ddpD b1484 0.18 -1.2 1,556,320 - ddpD b1484 0.27 -1.1 1,556,320 - ddpD b1484 0.27 -0.3 1,556,375 + ddpD b1484 0.32 -0.2 1,556,389 + ddpD b1484 0.34 -1.1 1,556,723 + ddpD b1484 0.68 +0.6 1,556,725 - ddpD b1484 0.68 -0.1 1,557,386 - ddpC b1485 0.39 +0.3 1,557,505 + ddpC b1485 0.52 +1.8 1,557,505 + ddpC b1485 0.52 +1.4 1,557,567 + ddpC b1485 0.59 +0.2 1,557,628 + ddpC b1485 0.66 +1.7 1,557,835 + ddpC b1485 0.89 -0.1 1,557,835 + ddpC b1485 0.89 -0.2 1,558,000 - +0.3 1,558,010 - -0.7
Or see this region's nucleotide sequence