Experiment: L-Valine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_741 and PfGW456L13_742 are separated by 532 nucleotides PfGW456L13_742 and PfGW456L13_743 are separated by 180 nucleotides
PfGW456L13_741 - sodium/alanine transporter, at 844,241 to 845,692
_741
PfGW456L13_742 - Aspartate ammonia-lyase (EC 4.3.1.1), at 846,225 to 847,649
_742
PfGW456L13_743 - Transcriptional regulator, at 847,830 to 848,741
_743
Position (kb) 846
847
848 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 845.307 kb on + strand, within PfGW456L13_741 at 845.307 kb on + strand, within PfGW456L13_741 at 845.307 kb on + strand, within PfGW456L13_741 at 845.307 kb on + strand, within PfGW456L13_741 at 845.307 kb on + strand, within PfGW456L13_741 at 845.307 kb on + strand, within PfGW456L13_741 at 845.307 kb on + strand, within PfGW456L13_741 at 845.307 kb on + strand, within PfGW456L13_741 at 845.307 kb on + strand, within PfGW456L13_741 at 845.307 kb on + strand, within PfGW456L13_741 at 845.307 kb on + strand, within PfGW456L13_741 at 845.307 kb on + strand, within PfGW456L13_741 at 845.307 kb on + strand, within PfGW456L13_741 at 845.308 kb on - strand, within PfGW456L13_741 at 845.308 kb on - strand, within PfGW456L13_741 at 845.308 kb on - strand, within PfGW456L13_741 at 845.308 kb on - strand, within PfGW456L13_741 at 845.308 kb on - strand, within PfGW456L13_741 at 845.308 kb on - strand, within PfGW456L13_741 at 845.308 kb on - strand, within PfGW456L13_741 at 845.308 kb on - strand, within PfGW456L13_741 at 845.308 kb on - strand, within PfGW456L13_741 at 845.308 kb on - strand, within PfGW456L13_741 at 845.308 kb on - strand, within PfGW456L13_741 at 845.308 kb on - strand, within PfGW456L13_741 at 845.308 kb on - strand, within PfGW456L13_741 at 845.308 kb on - strand, within PfGW456L13_741 at 845.310 kb on + strand, within PfGW456L13_741 at 845.310 kb on + strand, within PfGW456L13_741 at 845.310 kb on + strand, within PfGW456L13_741 at 845.310 kb on + strand, within PfGW456L13_741 at 845.310 kb on + strand, within PfGW456L13_741 at 845.310 kb on + strand, within PfGW456L13_741 at 845.311 kb on - strand, within PfGW456L13_741 at 845.311 kb on - strand, within PfGW456L13_741 at 845.311 kb on - strand, within PfGW456L13_741 at 845.311 kb on - strand, within PfGW456L13_741 at 845.311 kb on - strand, within PfGW456L13_741 at 845.311 kb on - strand, within PfGW456L13_741 at 845.355 kb on + strand, within PfGW456L13_741 at 845.355 kb on + strand, within PfGW456L13_741 at 845.355 kb on + strand, within PfGW456L13_741 at 845.356 kb on - strand, within PfGW456L13_741 at 845.356 kb on - strand, within PfGW456L13_741 at 845.356 kb on - strand, within PfGW456L13_741 at 845.575 kb on + strand at 845.575 kb on + strand at 845.575 kb on + strand at 845.575 kb on + strand at 845.575 kb on + strand at 845.575 kb on + strand at 845.575 kb on + strand at 845.576 kb on - strand at 845.576 kb on - strand at 845.576 kb on - strand at 845.576 kb on - strand at 845.622 kb on + strand at 845.622 kb on + strand at 845.622 kb on + strand at 845.622 kb on + strand at 845.622 kb on + strand at 845.622 kb on + strand at 845.622 kb on + strand at 845.622 kb on + strand at 845.622 kb on + strand at 845.622 kb on + strand at 845.623 kb on - strand at 845.623 kb on - strand at 845.623 kb on - strand at 845.623 kb on - strand at 845.654 kb on + strand at 845.654 kb on + strand at 845.654 kb on + strand at 845.654 kb on + strand at 845.697 kb on + strand at 845.697 kb on + strand at 845.698 kb on - strand at 845.698 kb on - strand at 845.718 kb on + strand at 845.718 kb on + strand at 845.719 kb on - strand at 845.719 kb on - strand at 845.753 kb on + strand at 845.753 kb on + strand at 845.753 kb on + strand at 845.754 kb on - strand at 845.820 kb on + strand at 845.821 kb on - strand at 845.821 kb on - strand at 845.823 kb on + strand at 845.823 kb on + strand at 845.823 kb on + strand at 845.823 kb on + strand at 845.823 kb on + strand at 845.823 kb on + strand at 845.823 kb on + strand at 845.823 kb on + strand at 845.823 kb on + strand at 845.824 kb on - strand at 845.824 kb on - strand at 845.824 kb on - strand at 845.889 kb on + strand at 845.890 kb on - strand at 845.890 kb on - strand at 845.892 kb on - strand at 845.892 kb on - strand at 845.979 kb on + strand at 846.028 kb on + strand at 846.035 kb on + strand at 846.035 kb on + strand at 846.035 kb on + strand at 846.035 kb on + strand at 846.036 kb on - strand at 846.036 kb on - strand at 846.036 kb on - strand at 846.104 kb on + strand at 846.105 kb on - strand at 846.105 kb on - strand at 846.105 kb on - strand at 846.105 kb on - strand at 846.207 kb on + strand at 846.207 kb on + strand at 846.207 kb on + strand at 846.207 kb on + strand at 846.208 kb on - strand at 846.208 kb on - strand at 846.208 kb on - strand at 846.208 kb on - strand at 846.208 kb on - strand at 846.213 kb on + strand at 846.213 kb on + strand at 846.213 kb on + strand at 846.213 kb on + strand at 846.213 kb on + strand at 846.213 kb on + strand at 846.213 kb on + strand at 846.214 kb on - strand at 846.214 kb on - strand at 846.214 kb on - strand at 846.214 kb on - strand at 846.214 kb on - strand at 846.214 kb on - strand at 846.391 kb on + strand, within PfGW456L13_742 at 846.392 kb on - strand, within PfGW456L13_742 at 846.609 kb on - strand, within PfGW456L13_742 at 846.895 kb on - strand, within PfGW456L13_742 at 846.911 kb on - strand, within PfGW456L13_742 at 847.256 kb on - strand, within PfGW456L13_742 at 847.256 kb on - strand, within PfGW456L13_742 at 847.256 kb on - strand, within PfGW456L13_742 at 847.262 kb on - strand, within PfGW456L13_742 at 847.262 kb on - strand, within PfGW456L13_742 at 847.548 kb on - strand at 847.548 kb on - strand at 847.576 kb on + strand at 847.576 kb on + strand at 847.576 kb on + strand at 847.576 kb on + strand at 847.576 kb on + strand at 847.577 kb on - strand at 847.577 kb on - strand at 847.577 kb on - strand at 847.577 kb on - strand at 847.577 kb on - strand at 847.577 kb on - strand at 847.579 kb on + strand at 847.580 kb on - strand at 847.580 kb on - strand at 847.580 kb on - strand at 847.653 kb on - strand at 847.747 kb on - strand at 847.802 kb on + strand at 848.068 kb on + strand, within PfGW456L13_743 at 848.068 kb on + strand, within PfGW456L13_743 at 848.068 kb on + strand, within PfGW456L13_743 at 848.069 kb on - strand, within PfGW456L13_743 at 848.069 kb on - strand, within PfGW456L13_743 at 848.069 kb on - strand, within PfGW456L13_743 at 848.069 kb on - strand, within PfGW456L13_743 at 848.069 kb on - strand, within PfGW456L13_743 at 848.069 kb on - strand, within PfGW456L13_743 at 848.069 kb on - strand, within PfGW456L13_743 at 848.069 kb on - strand, within PfGW456L13_743 at 848.277 kb on + strand, within PfGW456L13_743 at 848.278 kb on - strand, within PfGW456L13_743 at 848.278 kb on - strand, within PfGW456L13_743 at 848.427 kb on + strand, within PfGW456L13_743 at 848.502 kb on + strand, within PfGW456L13_743 at 848.503 kb on - strand, within PfGW456L13_743
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (C) remove 845,307 + PfGW456L13_741 0.73 +1.5 845,307 + PfGW456L13_741 0.73 +1.1 845,307 + PfGW456L13_741 0.73 +0.1 845,307 + PfGW456L13_741 0.73 +1.0 845,307 + PfGW456L13_741 0.73 -1.2 845,307 + PfGW456L13_741 0.73 +2.6 845,307 + PfGW456L13_741 0.73 +0.4 845,307 + PfGW456L13_741 0.73 +1.5 845,307 + PfGW456L13_741 0.73 +0.5 845,307 + PfGW456L13_741 0.73 -0.4 845,307 + PfGW456L13_741 0.73 +0.5 845,307 + PfGW456L13_741 0.73 +0.2 845,307 + PfGW456L13_741 0.73 -0.2 845,308 - PfGW456L13_741 0.73 +0.8 845,308 - PfGW456L13_741 0.73 +1.7 845,308 - PfGW456L13_741 0.73 +0.5 845,308 - PfGW456L13_741 0.73 -1.3 845,308 - PfGW456L13_741 0.73 +0.2 845,308 - PfGW456L13_741 0.73 +1.0 845,308 - PfGW456L13_741 0.73 +0.7 845,308 - PfGW456L13_741 0.73 +1.3 845,308 - PfGW456L13_741 0.73 +0.3 845,308 - PfGW456L13_741 0.73 -0.9 845,308 - PfGW456L13_741 0.73 +1.7 845,308 - PfGW456L13_741 0.73 +0.2 845,308 - PfGW456L13_741 0.73 +0.7 845,308 - PfGW456L13_741 0.73 +1.6 845,310 + PfGW456L13_741 0.74 -2.0 845,310 + PfGW456L13_741 0.74 +2.8 845,310 + PfGW456L13_741 0.74 +1.1 845,310 + PfGW456L13_741 0.74 +0.2 845,310 + PfGW456L13_741 0.74 +2.8 845,310 + PfGW456L13_741 0.74 +0.9 845,311 - PfGW456L13_741 0.74 +1.2 845,311 - PfGW456L13_741 0.74 +0.3 845,311 - PfGW456L13_741 0.74 +0.7 845,311 - PfGW456L13_741 0.74 +1.2 845,311 - PfGW456L13_741 0.74 +1.0 845,311 - PfGW456L13_741 0.74 -0.5 845,355 + PfGW456L13_741 0.77 +2.0 845,355 + PfGW456L13_741 0.77 -0.5 845,355 + PfGW456L13_741 0.77 +1.8 845,356 - PfGW456L13_741 0.77 -0.2 845,356 - PfGW456L13_741 0.77 +1.4 845,356 - PfGW456L13_741 0.77 +0.8 845,575 + +1.3 845,575 + +1.3 845,575 + +1.3 845,575 + -0.1 845,575 + +0.1 845,575 + +1.2 845,575 + +0.3 845,576 - +0.4 845,576 - +1.7 845,576 - +0.8 845,576 - +0.6 845,622 + +0.9 845,622 + -0.6 845,622 + +0.9 845,622 + +1.3 845,622 + +0.5 845,622 + +0.1 845,622 + +0.1 845,622 + +0.6 845,622 + -2.0 845,622 + -0.4 845,623 - +1.4 845,623 - +2.0 845,623 - +0.4 845,623 - +1.0 845,654 + +0.6 845,654 + +0.8 845,654 + +1.5 845,654 + +0.5 845,697 + +0.3 845,697 + +1.5 845,698 - -1.3 845,698 - +0.2 845,718 + -0.0 845,718 + +1.4 845,719 - -0.6 845,719 - +0.1 845,753 + +0.4 845,753 + +1.4 845,753 + -0.8 845,754 - -1.5 845,820 + +0.0 845,821 - -1.3 845,821 - -1.1 845,823 + +0.8 845,823 + +0.3 845,823 + +1.1 845,823 + -0.1 845,823 + +1.0 845,823 + +0.9 845,823 + +0.8 845,823 + +1.7 845,823 + +0.5 845,824 - +0.4 845,824 - +0.9 845,824 - -2.7 845,889 + -1.1 845,890 - -3.8 845,890 - -3.9 845,892 - -2.0 845,892 - -2.5 845,979 + +0.6 846,028 + +1.0 846,035 + +1.7 846,035 + +1.3 846,035 + +0.5 846,035 + +0.5 846,036 - +0.2 846,036 - -1.8 846,036 - -0.7 846,104 + -1.4 846,105 - -0.8 846,105 - -1.8 846,105 - -2.2 846,105 - -2.9 846,207 + -1.2 846,207 + +1.5 846,207 + -0.3 846,207 + +1.4 846,208 - +0.2 846,208 - +0.1 846,208 - -0.6 846,208 - +0.7 846,208 - -1.4 846,213 + -0.3 846,213 + +1.9 846,213 + -0.1 846,213 + +1.3 846,213 + -0.5 846,213 + +0.5 846,213 + +0.8 846,214 - +0.2 846,214 - +0.5 846,214 - -2.4 846,214 - -1.1 846,214 - -0.2 846,214 - -0.4 846,391 + PfGW456L13_742 0.12 +2.5 846,392 - PfGW456L13_742 0.12 +0.4 846,609 - PfGW456L13_742 0.27 +1.0 846,895 - PfGW456L13_742 0.47 -1.9 846,911 - PfGW456L13_742 0.48 +0.4 847,256 - PfGW456L13_742 0.72 +1.7 847,256 - PfGW456L13_742 0.72 +0.7 847,256 - PfGW456L13_742 0.72 +2.5 847,262 - PfGW456L13_742 0.73 +2.1 847,262 - PfGW456L13_742 0.73 +1.3 847,548 - +0.9 847,548 - +2.2 847,576 + +1.1 847,576 + -0.3 847,576 + +1.8 847,576 + +1.6 847,576 + +1.4 847,577 - +0.8 847,577 - +1.1 847,577 - -0.0 847,577 - +2.3 847,577 - +0.8 847,577 - +1.9 847,579 + +0.4 847,580 - +0.6 847,580 - +1.3 847,580 - +1.0 847,653 - +1.7 847,747 - +1.7 847,802 + -0.1 848,068 + PfGW456L13_743 0.26 +0.8 848,068 + PfGW456L13_743 0.26 -1.2 848,068 + PfGW456L13_743 0.26 +2.4 848,069 - PfGW456L13_743 0.26 +1.5 848,069 - PfGW456L13_743 0.26 +0.6 848,069 - PfGW456L13_743 0.26 +1.6 848,069 - PfGW456L13_743 0.26 +1.7 848,069 - PfGW456L13_743 0.26 +1.3 848,069 - PfGW456L13_743 0.26 +0.7 848,069 - PfGW456L13_743 0.26 -0.1 848,069 - PfGW456L13_743 0.26 +0.6 848,277 + PfGW456L13_743 0.49 +1.4 848,278 - PfGW456L13_743 0.49 +0.8 848,278 - PfGW456L13_743 0.49 +0.5 848,427 + PfGW456L13_743 0.65 +1.6 848,502 + PfGW456L13_743 0.74 -1.5 848,503 - PfGW456L13_743 0.74 +0.5
Or see this region's nucleotide sequence