Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_5011

Experiment: L-Valine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_5009 and PfGW456L13_5010 overlap by 1 nucleotidesPfGW456L13_5010 and PfGW456L13_5011 are separated by 7 nucleotidesPfGW456L13_5011 and PfGW456L13_5012 are separated by 43 nucleotidesPfGW456L13_5012 and PfGW456L13_5013 overlap by 1 nucleotides PfGW456L13_5009 - Arabinose 5-phosphate isomerase (EC 5.3.1.13), at 5,585,469 to 5,586,443 _5009 PfGW456L13_5010 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (EC 3.1.3.45), at 5,586,443 to 5,586,967 _5010 PfGW456L13_5011 - Uncharacterized protein YrbK clustered with lipopolysaccharide transporters, at 5,586,975 to 5,587,547 _5011 PfGW456L13_5012 - LptA, protein essential for LPS transport across the periplasm, at 5,587,591 to 5,588,082 _5012 PfGW456L13_5013 - Lipopolysaccharide ABC transporter, ATP-binding protein LptB, at 5,588,082 to 5,588,807 _5013 Position (kb) 5586 5587 5588Strain fitness (log2 ratio) -2 -1 0 1at 5586.974 kb on + strandat 5586.974 kb on + strandat 5586.974 kb on + strandat 5587.413 kb on + strand, within PfGW456L13_5011at 5587.413 kb on + strand, within PfGW456L13_5011at 5587.413 kb on + strand, within PfGW456L13_5011at 5587.413 kb on + strand, within PfGW456L13_5011at 5587.522 kb on + strandat 5587.522 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (C)
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5,586,974 + -0.8
5,586,974 + -0.7
5,586,974 + +0.9
5,587,413 + PfGW456L13_5011 0.76 -1.8
5,587,413 + PfGW456L13_5011 0.76 -1.2
5,587,413 + PfGW456L13_5011 0.76 +0.8
5,587,413 + PfGW456L13_5011 0.76 -1.4
5,587,522 + +1.2
5,587,522 + -0.2

Or see this region's nucleotide sequence