Experiment: L-Valine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_5009 and PfGW456L13_5010 overlap by 1 nucleotides PfGW456L13_5010 and PfGW456L13_5011 are separated by 7 nucleotides PfGW456L13_5011 and PfGW456L13_5012 are separated by 43 nucleotides PfGW456L13_5012 and PfGW456L13_5013 overlap by 1 nucleotides
PfGW456L13_5009 - Arabinose 5-phosphate isomerase (EC 5.3.1.13), at 5,585,469 to 5,586,443
_5009
PfGW456L13_5010 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (EC 3.1.3.45), at 5,586,443 to 5,586,967
_5010
PfGW456L13_5011 - Uncharacterized protein YrbK clustered with lipopolysaccharide transporters, at 5,586,975 to 5,587,547
_5011
PfGW456L13_5012 - LptA, protein essential for LPS transport across the periplasm, at 5,587,591 to 5,588,082
_5012
PfGW456L13_5013 - Lipopolysaccharide ABC transporter, ATP-binding protein LptB, at 5,588,082 to 5,588,807
_5013
Position (kb)
5586
5587
5588 Strain fitness (log2 ratio)
-2
-1
0
1 at 5586.974 kb on + strand at 5586.974 kb on + strand at 5586.974 kb on + strand at 5587.413 kb on + strand, within PfGW456L13_5011 at 5587.413 kb on + strand, within PfGW456L13_5011 at 5587.413 kb on + strand, within PfGW456L13_5011 at 5587.413 kb on + strand, within PfGW456L13_5011 at 5587.522 kb on + strand at 5587.522 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (C) remove 5,586,974 + -0.8 5,586,974 + -0.7 5,586,974 + +0.9 5,587,413 + PfGW456L13_5011 0.76 -1.8 5,587,413 + PfGW456L13_5011 0.76 -1.2 5,587,413 + PfGW456L13_5011 0.76 +0.8 5,587,413 + PfGW456L13_5011 0.76 -1.4 5,587,522 + +1.2 5,587,522 + -0.2
Or see this region's nucleotide sequence