Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4323

Experiment: L-Valine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4322 and PfGW456L13_4323 overlap by 4 nucleotidesPfGW456L13_4323 and PfGW456L13_4324 are separated by 1 nucleotidesPfGW456L13_4324 and PfGW456L13_4325 are separated by 43 nucleotides PfGW456L13_4322 - CheW domain protein, at 4,834,540 to 4,835,481 _4322 PfGW456L13_4323 - hypothetical protein, at 4,835,478 to 4,835,606 _4323 PfGW456L13_4324 - Chromosome (plasmid) partitioning protein ParA, at 4,835,608 to 4,836,396 _4324 PfGW456L13_4325 - Flagellar motor rotation protein MotB, at 4,836,440 to 4,837,330 _4325 Position (kb) 4835 4836Strain fitness (log2 ratio) -2 -1 0 1at 4834.787 kb on + strand, within PfGW456L13_4322at 4834.787 kb on + strand, within PfGW456L13_4322at 4834.788 kb on - strand, within PfGW456L13_4322at 4834.788 kb on - strand, within PfGW456L13_4322at 4834.788 kb on - strand, within PfGW456L13_4322at 4834.943 kb on + strand, within PfGW456L13_4322at 4834.943 kb on + strand, within PfGW456L13_4322at 4834.944 kb on - strand, within PfGW456L13_4322at 4835.064 kb on + strand, within PfGW456L13_4322at 4835.284 kb on + strand, within PfGW456L13_4322at 4835.429 kb on + strandat 4835.429 kb on + strandat 4835.429 kb on + strandat 4835.429 kb on + strandat 4835.466 kb on + strandat 4835.554 kb on + strand, within PfGW456L13_4323at 4835.554 kb on + strand, within PfGW456L13_4323at 4835.554 kb on + strand, within PfGW456L13_4323at 4835.554 kb on + strand, within PfGW456L13_4323at 4835.554 kb on + strand, within PfGW456L13_4323at 4835.555 kb on - strand, within PfGW456L13_4323at 4835.555 kb on - strand, within PfGW456L13_4323at 4835.589 kb on + strand, within PfGW456L13_4323at 4835.663 kb on + strandat 4835.753 kb on + strand, within PfGW456L13_4324at 4835.753 kb on + strand, within PfGW456L13_4324at 4835.753 kb on + strand, within PfGW456L13_4324at 4835.753 kb on + strand, within PfGW456L13_4324at 4835.753 kb on + strand, within PfGW456L13_4324at 4835.753 kb on + strand, within PfGW456L13_4324at 4835.753 kb on + strand, within PfGW456L13_4324at 4835.753 kb on + strand, within PfGW456L13_4324at 4835.753 kb on + strand, within PfGW456L13_4324at 4835.753 kb on + strand, within PfGW456L13_4324at 4835.753 kb on + strand, within PfGW456L13_4324at 4835.753 kb on + strand, within PfGW456L13_4324at 4835.754 kb on - strand, within PfGW456L13_4324at 4835.754 kb on - strand, within PfGW456L13_4324at 4835.754 kb on - strand, within PfGW456L13_4324at 4835.754 kb on - strand, within PfGW456L13_4324at 4835.754 kb on - strand, within PfGW456L13_4324at 4835.754 kb on - strand, within PfGW456L13_4324at 4835.754 kb on - strandat 4835.754 kb on - strand, within PfGW456L13_4324at 4835.754 kb on - strand, within PfGW456L13_4324at 4835.754 kb on - strand, within PfGW456L13_4324at 4835.754 kb on - strand, within PfGW456L13_4324at 4835.754 kb on - strand, within PfGW456L13_4324at 4835.754 kb on - strand, within PfGW456L13_4324at 4835.754 kb on - strand, within PfGW456L13_4324at 4835.754 kb on - strand, within PfGW456L13_4324at 4835.754 kb on - strand, within PfGW456L13_4324at 4836.219 kb on - strand, within PfGW456L13_4324at 4836.257 kb on + strandat 4836.258 kb on - strand, within PfGW456L13_4324at 4836.258 kb on - strand, within PfGW456L13_4324at 4836.322 kb on + strandat 4836.323 kb on - strandat 4836.436 kb on + strandat 4836.436 kb on + strandat 4836.436 kb on + strandat 4836.437 kb on - strandat 4836.437 kb on - strandat 4836.449 kb on + strandat 4836.450 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (C)
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4,834,787 + PfGW456L13_4322 0.26 -0.3
4,834,787 + PfGW456L13_4322 0.26 -0.4
4,834,788 - PfGW456L13_4322 0.26 -0.5
4,834,788 - PfGW456L13_4322 0.26 -1.5
4,834,788 - PfGW456L13_4322 0.26 -1.8
4,834,943 + PfGW456L13_4322 0.43 -0.3
4,834,943 + PfGW456L13_4322 0.43 +0.2
4,834,944 - PfGW456L13_4322 0.43 -1.1
4,835,064 + PfGW456L13_4322 0.56 -0.3
4,835,284 + PfGW456L13_4322 0.79 +0.9
4,835,429 + +1.7
4,835,429 + -0.6
4,835,429 + -0.4
4,835,429 + +0.9
4,835,466 + +0.9
4,835,554 + PfGW456L13_4323 0.59 -0.1
4,835,554 + PfGW456L13_4323 0.59 +0.8
4,835,554 + PfGW456L13_4323 0.59 +0.3
4,835,554 + PfGW456L13_4323 0.59 +0.6
4,835,554 + PfGW456L13_4323 0.59 -0.1
4,835,555 - PfGW456L13_4323 0.60 -0.2
4,835,555 - PfGW456L13_4323 0.60 -0.3
4,835,589 + PfGW456L13_4323 0.86 -0.3
4,835,663 + +0.1
4,835,753 + PfGW456L13_4324 0.18 +0.5
4,835,753 + PfGW456L13_4324 0.18 +0.7
4,835,753 + PfGW456L13_4324 0.18 +1.0
4,835,753 + PfGW456L13_4324 0.18 -0.3
4,835,753 + PfGW456L13_4324 0.18 +0.9
4,835,753 + PfGW456L13_4324 0.18 +0.2
4,835,753 + PfGW456L13_4324 0.18 -0.1
4,835,753 + PfGW456L13_4324 0.18 -1.7
4,835,753 + PfGW456L13_4324 0.18 +0.5
4,835,753 + PfGW456L13_4324 0.18 -0.8
4,835,753 + PfGW456L13_4324 0.18 +1.0
4,835,753 + PfGW456L13_4324 0.18 +0.6
4,835,754 - PfGW456L13_4324 0.19 +1.1
4,835,754 - PfGW456L13_4324 0.19 -2.3
4,835,754 - PfGW456L13_4324 0.19 +0.4
4,835,754 - PfGW456L13_4324 0.19 -0.3
4,835,754 - PfGW456L13_4324 0.19 +0.9
4,835,754 - PfGW456L13_4324 0.19 +0.0
4,835,754 - +0.0
4,835,754 - PfGW456L13_4324 0.19 -0.9
4,835,754 - PfGW456L13_4324 0.19 +0.6
4,835,754 - PfGW456L13_4324 0.19 +0.7
4,835,754 - PfGW456L13_4324 0.19 +0.1
4,835,754 - PfGW456L13_4324 0.19 -1.0
4,835,754 - PfGW456L13_4324 0.19 -0.1
4,835,754 - PfGW456L13_4324 0.19 +1.0
4,835,754 - PfGW456L13_4324 0.19 -0.4
4,835,754 - PfGW456L13_4324 0.19 +0.7
4,836,219 - PfGW456L13_4324 0.77 +0.8
4,836,257 + -1.0
4,836,258 - PfGW456L13_4324 0.82 +1.5
4,836,258 - PfGW456L13_4324 0.82 -0.2
4,836,322 + -0.5
4,836,323 - -0.6
4,836,436 + +0.2
4,836,436 + +0.7
4,836,436 + +1.1
4,836,437 - +1.4
4,836,437 - +1.5
4,836,449 + +1.5
4,836,450 - +1.2

Or see this region's nucleotide sequence