Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2700

Experiment: L-Valine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_2699 and PfGW456L13_2700 are separated by 24 nucleotidesPfGW456L13_2700 and PfGW456L13_2701 are separated by 235 nucleotidesPfGW456L13_2701 and PfGW456L13_2702 are separated by 0 nucleotides PfGW456L13_2699 - Exopolyphosphatase (EC 3.6.1.11), at 2,997,444 to 2,998,373 _2699 PfGW456L13_2700 - Arsenate reductase (EC 1.20.4.1), at 2,998,398 to 2,998,841 _2700 PfGW456L13_2701 - Cytochrome c2, at 2,999,077 to 2,999,466 _2701 PfGW456L13_2702 - Glycine cleavage system transcriptional activator, at 2,999,467 to 3,000,342 _2702 Position (kb) 2998 2999Strain fitness (log2 ratio) -2 -1 0 1at 2997.960 kb on + strand, within PfGW456L13_2699at 2997.960 kb on + strand, within PfGW456L13_2699at 2997.960 kb on + strand, within PfGW456L13_2699at 2997.961 kb on - strand, within PfGW456L13_2699at 2997.961 kb on - strand, within PfGW456L13_2699at 2998.310 kb on + strandat 2998.310 kb on + strandat 2998.310 kb on + strandat 2998.311 kb on - strandat 2998.311 kb on - strandat 2998.311 kb on - strandat 2998.372 kb on - strandat 2998.629 kb on + strand, within PfGW456L13_2700at 2998.860 kb on + strandat 2998.948 kb on + strandat 2998.948 kb on + strandat 2998.948 kb on + strandat 2998.948 kb on + strandat 2998.948 kb on + strandat 2998.949 kb on - strandat 2998.949 kb on - strandat 2998.949 kb on - strandat 2998.949 kb on - strandat 2998.961 kb on + strandat 2999.043 kb on + strandat 2999.043 kb on + strandat 2999.043 kb on + strandat 2999.047 kb on + strandat 2999.048 kb on - strandat 2999.287 kb on + strand, within PfGW456L13_2701at 2999.287 kb on + strand, within PfGW456L13_2701at 2999.287 kb on + strand, within PfGW456L13_2701at 2999.288 kb on - strand, within PfGW456L13_2701at 2999.288 kb on - strand, within PfGW456L13_2701at 2999.288 kb on - strand, within PfGW456L13_2701at 2999.288 kb on - strand, within PfGW456L13_2701at 2999.288 kb on - strand, within PfGW456L13_2701at 2999.288 kb on - strand, within PfGW456L13_2701at 2999.288 kb on - strand, within PfGW456L13_2701at 2999.351 kb on - strand, within PfGW456L13_2701at 2999.441 kb on - strandat 2999.740 kb on + strand, within PfGW456L13_2702at 2999.740 kb on + strand, within PfGW456L13_2702at 2999.740 kb on + strand, within PfGW456L13_2702at 2999.740 kb on + strand, within PfGW456L13_2702at 2999.740 kb on + strand, within PfGW456L13_2702at 2999.741 kb on - strand, within PfGW456L13_2702at 2999.741 kb on - strand, within PfGW456L13_2702at 2999.741 kb on - strand, within PfGW456L13_2702at 2999.741 kb on - strand, within PfGW456L13_2702at 2999.741 kb on - strand, within PfGW456L13_2702at 2999.741 kb on - strand, within PfGW456L13_2702at 2999.741 kb on - strandat 2999.741 kb on - strand, within PfGW456L13_2702

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (C)
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2,997,960 + PfGW456L13_2699 0.55 -1.0
2,997,960 + PfGW456L13_2699 0.55 -0.9
2,997,960 + PfGW456L13_2699 0.55 -0.1
2,997,961 - PfGW456L13_2699 0.56 -1.5
2,997,961 - PfGW456L13_2699 0.56 +1.4
2,998,310 + -0.1
2,998,310 + +0.1
2,998,310 + +0.5
2,998,311 - -0.0
2,998,311 - -0.6
2,998,311 - +0.5
2,998,372 - +0.6
2,998,629 + PfGW456L13_2700 0.52 +1.7
2,998,860 + -1.1
2,998,948 + -1.7
2,998,948 + -0.5
2,998,948 + -0.9
2,998,948 + +0.6
2,998,948 + -2.1
2,998,949 - +0.1
2,998,949 - +0.1
2,998,949 - -0.5
2,998,949 - +1.1
2,998,961 + +0.4
2,999,043 + -0.1
2,999,043 + -0.1
2,999,043 + +0.6
2,999,047 + -2.5
2,999,048 - +1.5
2,999,287 + PfGW456L13_2701 0.54 -0.8
2,999,287 + PfGW456L13_2701 0.54 -0.1
2,999,287 + PfGW456L13_2701 0.54 -0.6
2,999,288 - PfGW456L13_2701 0.54 -1.5
2,999,288 - PfGW456L13_2701 0.54 +1.2
2,999,288 - PfGW456L13_2701 0.54 -0.5
2,999,288 - PfGW456L13_2701 0.54 +0.8
2,999,288 - PfGW456L13_2701 0.54 +0.8
2,999,288 - PfGW456L13_2701 0.54 +1.0
2,999,288 - PfGW456L13_2701 0.54 -0.1
2,999,351 - PfGW456L13_2701 0.70 +0.1
2,999,441 - +0.4
2,999,740 + PfGW456L13_2702 0.31 -0.1
2,999,740 + PfGW456L13_2702 0.31 +0.9
2,999,740 + PfGW456L13_2702 0.31 -0.1
2,999,740 + PfGW456L13_2702 0.31 +0.7
2,999,740 + PfGW456L13_2702 0.31 -1.3
2,999,741 - PfGW456L13_2702 0.31 -1.0
2,999,741 - PfGW456L13_2702 0.31 -0.7
2,999,741 - PfGW456L13_2702 0.31 +1.6
2,999,741 - PfGW456L13_2702 0.31 -0.5
2,999,741 - PfGW456L13_2702 0.31 -1.3
2,999,741 - PfGW456L13_2702 0.31 +0.9
2,999,741 - +1.3
2,999,741 - PfGW456L13_2702 0.31 +0.2

Or see this region's nucleotide sequence