Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_204

Experiment: L-Valine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_203 and PfGW456L13_204 overlap by 17 nucleotidesPfGW456L13_204 and PfGW456L13_205 overlap by 42 nucleotidesPfGW456L13_205 and PfGW456L13_206 are separated by 607 nucleotides PfGW456L13_203 - Glycosyl transferase in large core OS assembly cluster, at 232,489 to 233,619 _203 PfGW456L13_204 - Carbamoyltransferase in large core OS assembly cluster, at 233,603 to 235,360 _204 PfGW456L13_205 - hypothetical protein, at 235,319 to 235,483 _205 PfGW456L13_206 - serine/threonine protein kinase, at 236,091 to 237,542 _206 Position (kb) 233 234 235 236Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 232.620 kb on + strand, within PfGW456L13_203at 232.735 kb on + strand, within PfGW456L13_203at 232.802 kb on - strand, within PfGW456L13_203at 232.802 kb on - strand, within PfGW456L13_203at 232.802 kb on - strand, within PfGW456L13_203at 232.802 kb on - strand, within PfGW456L13_203at 232.802 kb on - strand, within PfGW456L13_203at 232.802 kb on - strand, within PfGW456L13_203at 232.802 kb on - strand, within PfGW456L13_203at 232.802 kb on - strand, within PfGW456L13_203at 232.802 kb on - strand, within PfGW456L13_203at 232.820 kb on + strand, within PfGW456L13_203at 232.820 kb on + strand, within PfGW456L13_203at 232.820 kb on + strand, within PfGW456L13_203at 232.821 kb on - strand, within PfGW456L13_203at 232.821 kb on - strand, within PfGW456L13_203at 232.821 kb on - strand, within PfGW456L13_203at 232.824 kb on + strand, within PfGW456L13_203at 232.824 kb on + strand, within PfGW456L13_203at 232.987 kb on - strand, within PfGW456L13_203at 233.121 kb on - strand, within PfGW456L13_203at 233.121 kb on - strand, within PfGW456L13_203at 233.121 kb on - strand, within PfGW456L13_203at 233.223 kb on + strand, within PfGW456L13_203at 233.255 kb on + strand, within PfGW456L13_203at 233.256 kb on - strand, within PfGW456L13_203at 233.256 kb on - strand, within PfGW456L13_203at 233.315 kb on + strand, within PfGW456L13_203at 233.315 kb on + strand, within PfGW456L13_203at 233.315 kb on + strand, within PfGW456L13_203at 233.315 kb on + strand, within PfGW456L13_203at 233.315 kb on + strand, within PfGW456L13_203at 233.316 kb on - strand, within PfGW456L13_203at 233.316 kb on - strand, within PfGW456L13_203at 233.316 kb on - strand, within PfGW456L13_203at 233.427 kb on - strand, within PfGW456L13_203at 233.427 kb on - strand, within PfGW456L13_203at 233.427 kb on - strand, within PfGW456L13_203at 233.540 kb on + strandat 233.668 kb on - strandat 233.692 kb on + strandat 233.692 kb on + strandat 233.692 kb on + strandat 233.692 kb on + strandat 233.693 kb on - strandat 233.693 kb on - strandat 233.693 kb on - strandat 233.693 kb on - strandat 233.803 kb on - strand, within PfGW456L13_204at 233.803 kb on - strand, within PfGW456L13_204at 233.806 kb on - strand, within PfGW456L13_204at 233.815 kb on + strand, within PfGW456L13_204at 233.816 kb on - strand, within PfGW456L13_204at 233.816 kb on - strand, within PfGW456L13_204at 233.816 kb on - strand, within PfGW456L13_204at 233.816 kb on - strand, within PfGW456L13_204at 233.816 kb on - strand, within PfGW456L13_204at 233.817 kb on + strand, within PfGW456L13_204at 233.818 kb on - strand, within PfGW456L13_204at 233.818 kb on - strand, within PfGW456L13_204at 233.818 kb on - strand, within PfGW456L13_204at 233.818 kb on - strand, within PfGW456L13_204at 233.818 kb on - strand, within PfGW456L13_204at 234.247 kb on - strand, within PfGW456L13_204at 234.294 kb on + strand, within PfGW456L13_204at 234.294 kb on + strand, within PfGW456L13_204at 234.294 kb on + strand, within PfGW456L13_204at 234.294 kb on + strand, within PfGW456L13_204at 234.295 kb on - strand, within PfGW456L13_204at 234.295 kb on - strand, within PfGW456L13_204at 234.295 kb on - strand, within PfGW456L13_204at 234.295 kb on - strand, within PfGW456L13_204at 234.295 kb on - strand, within PfGW456L13_204at 234.295 kb on - strand, within PfGW456L13_204at 234.295 kb on - strand, within PfGW456L13_204at 234.295 kb on - strand, within PfGW456L13_204at 234.295 kb on - strand, within PfGW456L13_204at 234.418 kb on - strand, within PfGW456L13_204at 234.418 kb on - strand, within PfGW456L13_204at 234.457 kb on - strand, within PfGW456L13_204at 234.457 kb on - strand, within PfGW456L13_204at 234.457 kb on - strand, within PfGW456L13_204at 234.457 kb on - strand, within PfGW456L13_204at 234.514 kb on - strand, within PfGW456L13_204at 234.522 kb on + strand, within PfGW456L13_204at 234.522 kb on + strand, within PfGW456L13_204at 234.522 kb on + strand, within PfGW456L13_204at 234.522 kb on + strand, within PfGW456L13_204at 234.522 kb on + strand, within PfGW456L13_204at 234.522 kb on + strand, within PfGW456L13_204at 234.523 kb on - strand, within PfGW456L13_204at 234.523 kb on - strand, within PfGW456L13_204at 234.523 kb on - strand, within PfGW456L13_204at 234.523 kb on - strand, within PfGW456L13_204at 234.523 kb on - strand, within PfGW456L13_204at 234.523 kb on - strand, within PfGW456L13_204at 234.523 kb on - strand, within PfGW456L13_204at 234.523 kb on - strand, within PfGW456L13_204at 234.523 kb on - strand, within PfGW456L13_204at 234.523 kb on - strand, within PfGW456L13_204at 234.523 kb on - strand, within PfGW456L13_204at 234.523 kb on - strand, within PfGW456L13_204at 234.588 kb on + strand, within PfGW456L13_204at 234.588 kb on + strand, within PfGW456L13_204at 234.588 kb on + strand, within PfGW456L13_204at 234.589 kb on - strand, within PfGW456L13_204at 234.589 kb on - strand, within PfGW456L13_204at 234.589 kb on - strand, within PfGW456L13_204at 234.589 kb on - strand, within PfGW456L13_204at 234.589 kb on - strand, within PfGW456L13_204at 234.589 kb on - strand, within PfGW456L13_204at 234.589 kb on - strand, within PfGW456L13_204at 234.589 kb on - strand, within PfGW456L13_204at 234.589 kb on - strand, within PfGW456L13_204at 234.589 kb on - strand, within PfGW456L13_204at 234.589 kb on - strand, within PfGW456L13_204at 234.591 kb on + strand, within PfGW456L13_204at 234.591 kb on + strand, within PfGW456L13_204at 234.591 kb on + strand, within PfGW456L13_204at 234.592 kb on - strand, within PfGW456L13_204at 234.592 kb on - strand, within PfGW456L13_204at 234.697 kb on - strand, within PfGW456L13_204at 234.787 kb on - strand, within PfGW456L13_204at 234.787 kb on - strand, within PfGW456L13_204at 234.787 kb on - strand, within PfGW456L13_204at 234.934 kb on - strand, within PfGW456L13_204at 235.045 kb on - strand, within PfGW456L13_204at 235.045 kb on - strand, within PfGW456L13_204at 235.093 kb on - strand, within PfGW456L13_204at 235.111 kb on - strand, within PfGW456L13_204at 235.221 kb on + strandat 235.221 kb on + strandat 235.247 kb on - strandat 235.254 kb on - strandat 235.298 kb on - strandat 235.299 kb on + strandat 235.299 kb on + strandat 235.299 kb on + strandat 235.300 kb on - strandat 235.300 kb on - strandat 235.300 kb on - strandat 235.300 kb on - strandat 235.300 kb on - strandat 235.300 kb on - strandat 235.300 kb on - strandat 235.368 kb on + strand, within PfGW456L13_205at 235.368 kb on + strand, within PfGW456L13_205at 235.369 kb on - strand, within PfGW456L13_205at 235.369 kb on - strand, within PfGW456L13_205at 235.378 kb on - strand, within PfGW456L13_205at 235.378 kb on - strand, within PfGW456L13_205at 235.378 kb on - strand, within PfGW456L13_205at 235.411 kb on - strand, within PfGW456L13_205at 235.441 kb on + strand, within PfGW456L13_205at 235.442 kb on - strand, within PfGW456L13_205at 235.442 kb on - strand, within PfGW456L13_205at 235.442 kb on - strand, within PfGW456L13_205at 235.454 kb on + strand, within PfGW456L13_205at 235.455 kb on - strand, within PfGW456L13_205at 235.456 kb on + strand, within PfGW456L13_205at 235.457 kb on - strand, within PfGW456L13_205at 235.457 kb on - strand, within PfGW456L13_205at 235.457 kb on - strand, within PfGW456L13_205at 235.461 kb on + strand, within PfGW456L13_205at 235.461 kb on + strand, within PfGW456L13_205at 235.481 kb on + strandat 235.549 kb on + strandat 235.549 kb on + strandat 235.549 kb on + strandat 235.549 kb on + strandat 235.549 kb on + strandat 235.550 kb on - strandat 235.550 kb on - strandat 235.550 kb on - strandat 235.550 kb on - strandat 235.550 kb on - strandat 235.559 kb on + strandat 235.559 kb on + strandat 235.560 kb on - strandat 235.591 kb on + strandat 235.641 kb on + strandat 235.641 kb on + strandat 235.642 kb on - strandat 235.665 kb on - strandat 235.714 kb on + strandat 235.714 kb on + strandat 235.714 kb on + strandat 235.715 kb on - strandat 235.738 kb on + strandat 235.738 kb on + strandat 235.738 kb on + strandat 235.738 kb on + strandat 235.738 kb on + strandat 235.739 kb on - strandat 235.739 kb on - strandat 235.739 kb on - strandat 235.827 kb on + strandat 235.828 kb on - strandat 235.892 kb on + strandat 235.892 kb on + strandat 235.892 kb on + strandat 235.893 kb on - strandat 235.893 kb on - strandat 235.893 kb on - strandat 236.039 kb on + strandat 236.039 kb on + strandat 236.039 kb on + strandat 236.039 kb on + strandat 236.039 kb on + strandat 236.039 kb on + strandat 236.040 kb on - strandat 236.040 kb on - strandat 236.040 kb on - strandat 236.040 kb on - strandat 236.040 kb on - strandat 236.092 kb on + strandat 236.093 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (C)
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232,620 + PfGW456L13_203 0.12 +5.1
232,735 + PfGW456L13_203 0.22 +4.5
232,802 - PfGW456L13_203 0.28 +2.7
232,802 - PfGW456L13_203 0.28 +0.1
232,802 - PfGW456L13_203 0.28 +0.7
232,802 - PfGW456L13_203 0.28 +0.5
232,802 - PfGW456L13_203 0.28 +2.1
232,802 - PfGW456L13_203 0.28 +1.5
232,802 - PfGW456L13_203 0.28 +1.9
232,802 - PfGW456L13_203 0.28 +1.2
232,802 - PfGW456L13_203 0.28 +2.1
232,820 + PfGW456L13_203 0.29 +3.7
232,820 + PfGW456L13_203 0.29 +3.6
232,820 + PfGW456L13_203 0.29 +4.4
232,821 - PfGW456L13_203 0.29 +0.3
232,821 - PfGW456L13_203 0.29 +1.0
232,821 - PfGW456L13_203 0.29 +0.5
232,824 + PfGW456L13_203 0.30 +4.2
232,824 + PfGW456L13_203 0.30 +3.7
232,987 - PfGW456L13_203 0.44 +1.8
233,121 - PfGW456L13_203 0.56 +0.1
233,121 - PfGW456L13_203 0.56 +1.8
233,121 - PfGW456L13_203 0.56 +1.5
233,223 + PfGW456L13_203 0.65 +3.5
233,255 + PfGW456L13_203 0.68 +4.0
233,256 - PfGW456L13_203 0.68 +2.1
233,256 - PfGW456L13_203 0.68 +3.5
233,315 + PfGW456L13_203 0.73 +3.9
233,315 + PfGW456L13_203 0.73 +3.6
233,315 + PfGW456L13_203 0.73 +3.8
233,315 + PfGW456L13_203 0.73 +4.8
233,315 + PfGW456L13_203 0.73 +3.0
233,316 - PfGW456L13_203 0.73 +3.7
233,316 - PfGW456L13_203 0.73 +4.2
233,316 - PfGW456L13_203 0.73 +2.5
233,427 - PfGW456L13_203 0.83 +3.2
233,427 - PfGW456L13_203 0.83 +3.6
233,427 - PfGW456L13_203 0.83 -0.0
233,540 + +3.5
233,668 - +2.4
233,692 + +4.5
233,692 + +5.3
233,692 + +5.5
233,692 + +4.8
233,693 - +0.9
233,693 - +3.2
233,693 - +1.5
233,693 - +1.3
233,803 - PfGW456L13_204 0.11 +1.5
233,803 - PfGW456L13_204 0.11 +0.0
233,806 - PfGW456L13_204 0.12 +2.4
233,815 + PfGW456L13_204 0.12 +4.5
233,816 - PfGW456L13_204 0.12 +1.1
233,816 - PfGW456L13_204 0.12 +1.7
233,816 - PfGW456L13_204 0.12 +1.2
233,816 - PfGW456L13_204 0.12 +1.3
233,816 - PfGW456L13_204 0.12 +1.7
233,817 + PfGW456L13_204 0.12 +5.3
233,818 - PfGW456L13_204 0.12 +2.3
233,818 - PfGW456L13_204 0.12 +1.9
233,818 - PfGW456L13_204 0.12 +2.7
233,818 - PfGW456L13_204 0.12 +0.7
233,818 - PfGW456L13_204 0.12 +1.9
234,247 - PfGW456L13_204 0.37 +2.3
234,294 + PfGW456L13_204 0.39 +5.5
234,294 + PfGW456L13_204 0.39 +5.3
234,294 + PfGW456L13_204 0.39 +5.6
234,294 + PfGW456L13_204 0.39 +5.4
234,295 - PfGW456L13_204 0.39 +2.9
234,295 - PfGW456L13_204 0.39 +2.7
234,295 - PfGW456L13_204 0.39 +2.2
234,295 - PfGW456L13_204 0.39 +2.6
234,295 - PfGW456L13_204 0.39 +2.8
234,295 - PfGW456L13_204 0.39 +4.3
234,295 - PfGW456L13_204 0.39 +2.1
234,295 - PfGW456L13_204 0.39 +2.5
234,295 - PfGW456L13_204 0.39 +1.3
234,418 - PfGW456L13_204 0.46 +2.1
234,418 - PfGW456L13_204 0.46 +3.1
234,457 - PfGW456L13_204 0.49 +1.6
234,457 - PfGW456L13_204 0.49 +2.3
234,457 - PfGW456L13_204 0.49 +1.9
234,457 - PfGW456L13_204 0.49 +1.5
234,514 - PfGW456L13_204 0.52 +2.0
234,522 + PfGW456L13_204 0.52 +4.4
234,522 + PfGW456L13_204 0.52 +5.4
234,522 + PfGW456L13_204 0.52 +5.2
234,522 + PfGW456L13_204 0.52 +5.5
234,522 + PfGW456L13_204 0.52 +5.4
234,522 + PfGW456L13_204 0.52 +4.9
234,523 - PfGW456L13_204 0.52 +3.8
234,523 - PfGW456L13_204 0.52 +2.2
234,523 - PfGW456L13_204 0.52 +3.0
234,523 - PfGW456L13_204 0.52 +3.3
234,523 - PfGW456L13_204 0.52 +0.9
234,523 - PfGW456L13_204 0.52 +3.5
234,523 - PfGW456L13_204 0.52 +2.0
234,523 - PfGW456L13_204 0.52 +3.5
234,523 - PfGW456L13_204 0.52 +2.3
234,523 - PfGW456L13_204 0.52 +1.5
234,523 - PfGW456L13_204 0.52 +2.9
234,523 - PfGW456L13_204 0.52 +1.9
234,588 + PfGW456L13_204 0.56 +4.7
234,588 + PfGW456L13_204 0.56 +5.8
234,588 + PfGW456L13_204 0.56 +5.6
234,589 - PfGW456L13_204 0.56 +2.8
234,589 - PfGW456L13_204 0.56 +2.0
234,589 - PfGW456L13_204 0.56 +2.8
234,589 - PfGW456L13_204 0.56 +3.0
234,589 - PfGW456L13_204 0.56 +2.9
234,589 - PfGW456L13_204 0.56 +3.5
234,589 - PfGW456L13_204 0.56 +2.0
234,589 - PfGW456L13_204 0.56 +2.6
234,589 - PfGW456L13_204 0.56 +2.6
234,589 - PfGW456L13_204 0.56 +2.6
234,589 - PfGW456L13_204 0.56 +2.5
234,591 + PfGW456L13_204 0.56 +4.5
234,591 + PfGW456L13_204 0.56 +5.8
234,591 + PfGW456L13_204 0.56 +4.8
234,592 - PfGW456L13_204 0.56 +2.7
234,592 - PfGW456L13_204 0.56 +2.2
234,697 - PfGW456L13_204 0.62 +2.9
234,787 - PfGW456L13_204 0.67 +2.1
234,787 - PfGW456L13_204 0.67 +2.3
234,787 - PfGW456L13_204 0.67 -2.0
234,934 - PfGW456L13_204 0.76 +3.1
235,045 - PfGW456L13_204 0.82 +2.5
235,045 - PfGW456L13_204 0.82 +2.8
235,093 - PfGW456L13_204 0.85 +2.3
235,111 - PfGW456L13_204 0.86 -0.6
235,221 + +5.6
235,221 + +6.2
235,247 - +1.4
235,254 - +1.8
235,298 - +2.7
235,299 + +5.6
235,299 + +4.3
235,299 + +4.6
235,300 - +2.1
235,300 - +2.8
235,300 - +0.6
235,300 - +2.9
235,300 - +2.3
235,300 - +1.4
235,300 - +2.5
235,368 + PfGW456L13_205 0.30 +5.8
235,368 + PfGW456L13_205 0.30 +6.2
235,369 - PfGW456L13_205 0.30 +2.6
235,369 - PfGW456L13_205 0.30 +2.3
235,378 - PfGW456L13_205 0.36 +1.9
235,378 - PfGW456L13_205 0.36 +1.3
235,378 - PfGW456L13_205 0.36 +2.5
235,411 - PfGW456L13_205 0.56 +0.4
235,441 + PfGW456L13_205 0.74 +5.4
235,442 - PfGW456L13_205 0.75 -0.1
235,442 - PfGW456L13_205 0.75 +3.2
235,442 - PfGW456L13_205 0.75 +2.0
235,454 + PfGW456L13_205 0.82 +4.2
235,455 - PfGW456L13_205 0.82 +1.3
235,456 + PfGW456L13_205 0.83 +3.4
235,457 - PfGW456L13_205 0.84 -0.6
235,457 - PfGW456L13_205 0.84 +0.4
235,457 - PfGW456L13_205 0.84 -0.7
235,461 + PfGW456L13_205 0.86 +1.5
235,461 + PfGW456L13_205 0.86 +3.3
235,481 + +0.3
235,549 + +0.3
235,549 + +0.4
235,549 + -1.3
235,549 + +0.1
235,549 + -0.0
235,550 - +0.3
235,550 - +0.6
235,550 - -0.2
235,550 - +0.4
235,550 - +0.2
235,559 + +2.5
235,559 + -0.2
235,560 - +0.5
235,591 + -0.3
235,641 + -0.8
235,641 + +1.1
235,642 - +0.3
235,665 - -0.2
235,714 + +0.5
235,714 + -0.8
235,714 + +0.3
235,715 - +0.8
235,738 + -0.5
235,738 + -0.5
235,738 + -0.1
235,738 + +1.8
235,738 + +0.2
235,739 - -0.7
235,739 - -1.6
235,739 - -0.4
235,827 + +1.8
235,828 - +0.6
235,892 + +1.0
235,892 + +0.7
235,892 + +1.1
235,893 - +0.6
235,893 - -1.2
235,893 - +1.4
236,039 + +0.2
236,039 + +1.9
236,039 + +0.7
236,039 + +0.4
236,039 + -0.7
236,039 + +1.2
236,040 - +1.3
236,040 - +1.8
236,040 - +0.5
236,040 - +0.3
236,040 - -0.4
236,092 + -0.8
236,093 - -1.3

Or see this region's nucleotide sequence