Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1203

Experiment: L-Valine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_1202 and PfGW456L13_1203 overlap by 20 nucleotidesPfGW456L13_1203 and PfGW456L13_1204 are separated by 130 nucleotides PfGW456L13_1202 - Survival protein SurA precursor (Peptidyl-prolyl cis-trans isomerase SurA) (EC 5.2.1.8), at 1,340,390 to 1,341,706 _1202 PfGW456L13_1203 - Outer membrane protein Imp, required for envelope biogenesis / Organic solvent tolerance protein precursor, at 1,341,687 to 1,344,485 _1203 PfGW456L13_1204 - COG3178: Predicted phosphotransferase related to Ser/Thr protein kinases, at 1,344,616 to 1,345,635 _1204 Position (kb) 1341 1342 1343 1344 1345Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1341.748 kb on - strandat 1341.748 kb on - strandat 1341.748 kb on - strandat 1341.748 kb on - strandat 1341.748 kb on - strandat 1344.571 kb on - strandat 1344.571 kb on - strandat 1344.571 kb on - strandat 1344.571 kb on - strandat 1344.571 kb on - strandat 1344.571 kb on - strandat 1344.632 kb on + strandat 1344.632 kb on + strandat 1344.632 kb on + strandat 1344.632 kb on + strandat 1344.632 kb on + strandat 1344.632 kb on + strandat 1344.632 kb on + strandat 1344.632 kb on + strandat 1344.632 kb on + strandat 1344.632 kb on + strandat 1344.633 kb on - strandat 1344.633 kb on - strandat 1344.633 kb on - strandat 1344.633 kb on - strandat 1344.633 kb on - strandat 1344.633 kb on - strandat 1344.633 kb on - strandat 1344.633 kb on - strandat 1344.633 kb on - strandat 1344.633 kb on - strandat 1344.757 kb on + strand, within PfGW456L13_1204at 1344.757 kb on + strand, within PfGW456L13_1204at 1344.869 kb on + strand, within PfGW456L13_1204at 1344.870 kb on - strand, within PfGW456L13_1204at 1344.918 kb on - strand, within PfGW456L13_1204at 1344.943 kb on + strand, within PfGW456L13_1204at 1344.943 kb on + strand, within PfGW456L13_1204at 1344.944 kb on - strand, within PfGW456L13_1204at 1344.944 kb on - strand, within PfGW456L13_1204at 1345.048 kb on + strand, within PfGW456L13_1204at 1345.048 kb on + strand, within PfGW456L13_1204at 1345.048 kb on + strand, within PfGW456L13_1204at 1345.048 kb on + strand, within PfGW456L13_1204at 1345.048 kb on + strand, within PfGW456L13_1204at 1345.049 kb on - strand, within PfGW456L13_1204at 1345.049 kb on - strand, within PfGW456L13_1204at 1345.096 kb on + strand, within PfGW456L13_1204at 1345.096 kb on + strand, within PfGW456L13_1204at 1345.096 kb on + strand, within PfGW456L13_1204at 1345.096 kb on + strand, within PfGW456L13_1204at 1345.097 kb on - strand, within PfGW456L13_1204at 1345.097 kb on - strand, within PfGW456L13_1204at 1345.097 kb on - strand, within PfGW456L13_1204at 1345.216 kb on + strand, within PfGW456L13_1204at 1345.216 kb on + strand, within PfGW456L13_1204at 1345.216 kb on + strand, within PfGW456L13_1204at 1345.216 kb on + strand, within PfGW456L13_1204at 1345.216 kb on + strand, within PfGW456L13_1204at 1345.216 kb on + strand, within PfGW456L13_1204at 1345.216 kb on + strand, within PfGW456L13_1204at 1345.217 kb on - strand, within PfGW456L13_1204at 1345.217 kb on - strand, within PfGW456L13_1204at 1345.217 kb on - strand, within PfGW456L13_1204at 1345.217 kb on - strand, within PfGW456L13_1204at 1345.217 kb on - strand, within PfGW456L13_1204at 1345.217 kb on - strand, within PfGW456L13_1204at 1345.217 kb on - strand, within PfGW456L13_1204at 1345.282 kb on + strand, within PfGW456L13_1204at 1345.282 kb on + strand, within PfGW456L13_1204at 1345.282 kb on + strand, within PfGW456L13_1204at 1345.283 kb on - strand, within PfGW456L13_1204at 1345.283 kb on - strand, within PfGW456L13_1204at 1345.283 kb on - strand, within PfGW456L13_1204at 1345.297 kb on + strand, within PfGW456L13_1204at 1345.297 kb on + strand, within PfGW456L13_1204at 1345.297 kb on + strand, within PfGW456L13_1204at 1345.373 kb on - strand, within PfGW456L13_1204

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Valine (C)
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1,341,748 - -1.2
1,341,748 - -1.6
1,341,748 - -1.1
1,341,748 - -0.7
1,341,748 - -0.5
1,344,571 - -0.8
1,344,571 - +0.5
1,344,571 - -0.2
1,344,571 - -2.5
1,344,571 - +2.1
1,344,571 - +0.8
1,344,632 + -0.9
1,344,632 + -0.6
1,344,632 + -2.5
1,344,632 + +0.4
1,344,632 + -1.9
1,344,632 + +0.1
1,344,632 + -1.7
1,344,632 + +0.6
1,344,632 + +0.3
1,344,632 + -0.6
1,344,633 - +0.8
1,344,633 - +0.9
1,344,633 - +1.7
1,344,633 - -0.4
1,344,633 - -1.3
1,344,633 - +1.4
1,344,633 - +1.5
1,344,633 - +0.0
1,344,633 - +0.1
1,344,633 - +0.2
1,344,757 + PfGW456L13_1204 0.14 +1.4
1,344,757 + PfGW456L13_1204 0.14 +0.4
1,344,869 + PfGW456L13_1204 0.25 +0.6
1,344,870 - PfGW456L13_1204 0.25 +0.8
1,344,918 - PfGW456L13_1204 0.30 +2.0
1,344,943 + PfGW456L13_1204 0.32 -0.2
1,344,943 + PfGW456L13_1204 0.32 +0.4
1,344,944 - PfGW456L13_1204 0.32 +1.5
1,344,944 - PfGW456L13_1204 0.32 -0.0
1,345,048 + PfGW456L13_1204 0.42 +0.6
1,345,048 + PfGW456L13_1204 0.42 +0.1
1,345,048 + PfGW456L13_1204 0.42 +1.0
1,345,048 + PfGW456L13_1204 0.42 -0.4
1,345,048 + PfGW456L13_1204 0.42 +2.1
1,345,049 - PfGW456L13_1204 0.42 +1.7
1,345,049 - PfGW456L13_1204 0.42 +0.4
1,345,096 + PfGW456L13_1204 0.47 +0.6
1,345,096 + PfGW456L13_1204 0.47 +0.9
1,345,096 + PfGW456L13_1204 0.47 +0.4
1,345,096 + PfGW456L13_1204 0.47 -0.1
1,345,097 - PfGW456L13_1204 0.47 +2.5
1,345,097 - PfGW456L13_1204 0.47 -0.8
1,345,097 - PfGW456L13_1204 0.47 -0.6
1,345,216 + PfGW456L13_1204 0.59 +1.3
1,345,216 + PfGW456L13_1204 0.59 +2.0
1,345,216 + PfGW456L13_1204 0.59 +0.1
1,345,216 + PfGW456L13_1204 0.59 +1.7
1,345,216 + PfGW456L13_1204 0.59 -0.4
1,345,216 + PfGW456L13_1204 0.59 +1.1
1,345,216 + PfGW456L13_1204 0.59 +0.7
1,345,217 - PfGW456L13_1204 0.59 +2.9
1,345,217 - PfGW456L13_1204 0.59 -0.7
1,345,217 - PfGW456L13_1204 0.59 +0.1
1,345,217 - PfGW456L13_1204 0.59 +1.3
1,345,217 - PfGW456L13_1204 0.59 +1.5
1,345,217 - PfGW456L13_1204 0.59 -0.2
1,345,217 - PfGW456L13_1204 0.59 +0.1
1,345,282 + PfGW456L13_1204 0.65 +1.3
1,345,282 + PfGW456L13_1204 0.65 -0.5
1,345,282 + PfGW456L13_1204 0.65 +1.0
1,345,283 - PfGW456L13_1204 0.65 +0.8
1,345,283 - PfGW456L13_1204 0.65 -0.2
1,345,283 - PfGW456L13_1204 0.65 +0.0
1,345,297 + PfGW456L13_1204 0.67 +0.2
1,345,297 + PfGW456L13_1204 0.67 -0.4
1,345,297 + PfGW456L13_1204 0.67 +0.7
1,345,373 - PfGW456L13_1204 0.74 +2.2

Or see this region's nucleotide sequence