Experiment: L-Valine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_1202 and PfGW456L13_1203 overlap by 20 nucleotides PfGW456L13_1203 and PfGW456L13_1204 are separated by 130 nucleotides
PfGW456L13_1202 - Survival protein SurA precursor (Peptidyl-prolyl cis-trans isomerase SurA) (EC 5.2.1.8), at 1,340,390 to 1,341,706
_1202
PfGW456L13_1203 - Outer membrane protein Imp, required for envelope biogenesis / Organic solvent tolerance protein precursor, at 1,341,687 to 1,344,485
_1203
PfGW456L13_1204 - COG3178: Predicted phosphotransferase related to Ser/Thr protein kinases, at 1,344,616 to 1,345,635
_1204
Position (kb)
1341
1342
1343
1344
1345 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1341.748 kb on - strand at 1341.748 kb on - strand at 1341.748 kb on - strand at 1341.748 kb on - strand at 1341.748 kb on - strand at 1344.571 kb on - strand at 1344.571 kb on - strand at 1344.571 kb on - strand at 1344.571 kb on - strand at 1344.571 kb on - strand at 1344.571 kb on - strand at 1344.632 kb on + strand at 1344.632 kb on + strand at 1344.632 kb on + strand at 1344.632 kb on + strand at 1344.632 kb on + strand at 1344.632 kb on + strand at 1344.632 kb on + strand at 1344.632 kb on + strand at 1344.632 kb on + strand at 1344.632 kb on + strand at 1344.633 kb on - strand at 1344.633 kb on - strand at 1344.633 kb on - strand at 1344.633 kb on - strand at 1344.633 kb on - strand at 1344.633 kb on - strand at 1344.633 kb on - strand at 1344.633 kb on - strand at 1344.633 kb on - strand at 1344.633 kb on - strand at 1344.757 kb on + strand, within PfGW456L13_1204 at 1344.757 kb on + strand, within PfGW456L13_1204 at 1344.869 kb on + strand, within PfGW456L13_1204 at 1344.870 kb on - strand, within PfGW456L13_1204 at 1344.918 kb on - strand, within PfGW456L13_1204 at 1344.943 kb on + strand, within PfGW456L13_1204 at 1344.943 kb on + strand, within PfGW456L13_1204 at 1344.944 kb on - strand, within PfGW456L13_1204 at 1344.944 kb on - strand, within PfGW456L13_1204 at 1345.048 kb on + strand, within PfGW456L13_1204 at 1345.048 kb on + strand, within PfGW456L13_1204 at 1345.048 kb on + strand, within PfGW456L13_1204 at 1345.048 kb on + strand, within PfGW456L13_1204 at 1345.048 kb on + strand, within PfGW456L13_1204 at 1345.049 kb on - strand, within PfGW456L13_1204 at 1345.049 kb on - strand, within PfGW456L13_1204 at 1345.096 kb on + strand, within PfGW456L13_1204 at 1345.096 kb on + strand, within PfGW456L13_1204 at 1345.096 kb on + strand, within PfGW456L13_1204 at 1345.096 kb on + strand, within PfGW456L13_1204 at 1345.097 kb on - strand, within PfGW456L13_1204 at 1345.097 kb on - strand, within PfGW456L13_1204 at 1345.097 kb on - strand, within PfGW456L13_1204 at 1345.216 kb on + strand, within PfGW456L13_1204 at 1345.216 kb on + strand, within PfGW456L13_1204 at 1345.216 kb on + strand, within PfGW456L13_1204 at 1345.216 kb on + strand, within PfGW456L13_1204 at 1345.216 kb on + strand, within PfGW456L13_1204 at 1345.216 kb on + strand, within PfGW456L13_1204 at 1345.216 kb on + strand, within PfGW456L13_1204 at 1345.217 kb on - strand, within PfGW456L13_1204 at 1345.217 kb on - strand, within PfGW456L13_1204 at 1345.217 kb on - strand, within PfGW456L13_1204 at 1345.217 kb on - strand, within PfGW456L13_1204 at 1345.217 kb on - strand, within PfGW456L13_1204 at 1345.217 kb on - strand, within PfGW456L13_1204 at 1345.217 kb on - strand, within PfGW456L13_1204 at 1345.282 kb on + strand, within PfGW456L13_1204 at 1345.282 kb on + strand, within PfGW456L13_1204 at 1345.282 kb on + strand, within PfGW456L13_1204 at 1345.283 kb on - strand, within PfGW456L13_1204 at 1345.283 kb on - strand, within PfGW456L13_1204 at 1345.283 kb on - strand, within PfGW456L13_1204 at 1345.297 kb on + strand, within PfGW456L13_1204 at 1345.297 kb on + strand, within PfGW456L13_1204 at 1345.297 kb on + strand, within PfGW456L13_1204 at 1345.373 kb on - strand, within PfGW456L13_1204
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (C) remove 1,341,748 - -1.2 1,341,748 - -1.6 1,341,748 - -1.1 1,341,748 - -0.7 1,341,748 - -0.5 1,344,571 - -0.8 1,344,571 - +0.5 1,344,571 - -0.2 1,344,571 - -2.5 1,344,571 - +2.1 1,344,571 - +0.8 1,344,632 + -0.9 1,344,632 + -0.6 1,344,632 + -2.5 1,344,632 + +0.4 1,344,632 + -1.9 1,344,632 + +0.1 1,344,632 + -1.7 1,344,632 + +0.6 1,344,632 + +0.3 1,344,632 + -0.6 1,344,633 - +0.8 1,344,633 - +0.9 1,344,633 - +1.7 1,344,633 - -0.4 1,344,633 - -1.3 1,344,633 - +1.4 1,344,633 - +1.5 1,344,633 - +0.0 1,344,633 - +0.1 1,344,633 - +0.2 1,344,757 + PfGW456L13_1204 0.14 +1.4 1,344,757 + PfGW456L13_1204 0.14 +0.4 1,344,869 + PfGW456L13_1204 0.25 +0.6 1,344,870 - PfGW456L13_1204 0.25 +0.8 1,344,918 - PfGW456L13_1204 0.30 +2.0 1,344,943 + PfGW456L13_1204 0.32 -0.2 1,344,943 + PfGW456L13_1204 0.32 +0.4 1,344,944 - PfGW456L13_1204 0.32 +1.5 1,344,944 - PfGW456L13_1204 0.32 -0.0 1,345,048 + PfGW456L13_1204 0.42 +0.6 1,345,048 + PfGW456L13_1204 0.42 +0.1 1,345,048 + PfGW456L13_1204 0.42 +1.0 1,345,048 + PfGW456L13_1204 0.42 -0.4 1,345,048 + PfGW456L13_1204 0.42 +2.1 1,345,049 - PfGW456L13_1204 0.42 +1.7 1,345,049 - PfGW456L13_1204 0.42 +0.4 1,345,096 + PfGW456L13_1204 0.47 +0.6 1,345,096 + PfGW456L13_1204 0.47 +0.9 1,345,096 + PfGW456L13_1204 0.47 +0.4 1,345,096 + PfGW456L13_1204 0.47 -0.1 1,345,097 - PfGW456L13_1204 0.47 +2.5 1,345,097 - PfGW456L13_1204 0.47 -0.8 1,345,097 - PfGW456L13_1204 0.47 -0.6 1,345,216 + PfGW456L13_1204 0.59 +1.3 1,345,216 + PfGW456L13_1204 0.59 +2.0 1,345,216 + PfGW456L13_1204 0.59 +0.1 1,345,216 + PfGW456L13_1204 0.59 +1.7 1,345,216 + PfGW456L13_1204 0.59 -0.4 1,345,216 + PfGW456L13_1204 0.59 +1.1 1,345,216 + PfGW456L13_1204 0.59 +0.7 1,345,217 - PfGW456L13_1204 0.59 +2.9 1,345,217 - PfGW456L13_1204 0.59 -0.7 1,345,217 - PfGW456L13_1204 0.59 +0.1 1,345,217 - PfGW456L13_1204 0.59 +1.3 1,345,217 - PfGW456L13_1204 0.59 +1.5 1,345,217 - PfGW456L13_1204 0.59 -0.2 1,345,217 - PfGW456L13_1204 0.59 +0.1 1,345,282 + PfGW456L13_1204 0.65 +1.3 1,345,282 + PfGW456L13_1204 0.65 -0.5 1,345,282 + PfGW456L13_1204 0.65 +1.0 1,345,283 - PfGW456L13_1204 0.65 +0.8 1,345,283 - PfGW456L13_1204 0.65 -0.2 1,345,283 - PfGW456L13_1204 0.65 +0.0 1,345,297 + PfGW456L13_1204 0.67 +0.2 1,345,297 + PfGW456L13_1204 0.67 -0.4 1,345,297 + PfGW456L13_1204 0.67 +0.7 1,345,373 - PfGW456L13_1204 0.74 +2.2
Or see this region's nucleotide sequence