Strain Fitness in Pseudomonas sp. RS175 around PFR28_00890

Experiment: Betaine (C) 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00889 and PFR28_00890 are separated by 187 nucleotidesPFR28_00890 and PFR28_00891 are separated by 12 nucleotidesPFR28_00891 and PFR28_00892 are separated by 121 nucleotides PFR28_00889: PFR28_00889 - Fumarate hydratase class II, at 961,573 to 962,967 _00889 PFR28_00890: PFR28_00890 - hypothetical protein, at 963,155 to 963,673 _00890 PFR28_00891: PFR28_00891 - DNA-binding transcriptional regulator BolA, at 963,686 to 963,985 _00891 PFR28_00892: PFR28_00892 - hypothetical protein, at 964,107 to 965,048 _00892 Position (kb) 963 964Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 962.346 kb on - strand, within PFR28_00889at 962.415 kb on + strand, within PFR28_00889at 962.913 kb on - strandat 962.913 kb on - strandat 963.034 kb on + strandat 963.034 kb on + strandat 963.034 kb on + strandat 963.034 kb on + strandat 963.034 kb on + strandat 963.034 kb on + strandat 963.035 kb on - strandat 963.035 kb on - strandat 963.096 kb on + strandat 963.096 kb on + strandat 963.097 kb on - strandat 963.097 kb on - strandat 963.099 kb on + strandat 963.100 kb on - strandat 963.129 kb on - strandat 963.140 kb on + strandat 963.141 kb on - strandat 963.141 kb on - strandat 963.296 kb on + strand, within PFR28_00890at 963.296 kb on + strand, within PFR28_00890at 963.296 kb on + strand, within PFR28_00890at 963.296 kb on + strand, within PFR28_00890at 963.296 kb on + strand, within PFR28_00890at 963.296 kb on + strand, within PFR28_00890at 963.297 kb on - strand, within PFR28_00890at 963.297 kb on - strand, within PFR28_00890at 963.297 kb on - strand, within PFR28_00890at 963.297 kb on - strand, within PFR28_00890at 963.377 kb on + strand, within PFR28_00890at 963.377 kb on + strand, within PFR28_00890at 963.378 kb on - strand, within PFR28_00890at 963.378 kb on - strand, within PFR28_00890at 963.452 kb on + strand, within PFR28_00890at 963.452 kb on + strand, within PFR28_00890at 963.452 kb on + strand, within PFR28_00890at 963.453 kb on - strand, within PFR28_00890at 963.500 kb on + strand, within PFR28_00890at 963.500 kb on + strand, within PFR28_00890at 963.501 kb on - strand, within PFR28_00890at 963.501 kb on - strand, within PFR28_00890at 963.685 kb on + strandat 963.685 kb on + strandat 963.791 kb on + strand, within PFR28_00891at 963.791 kb on + strand, within PFR28_00891at 963.791 kb on + strand, within PFR28_00891at 963.792 kb on - strand, within PFR28_00891at 963.792 kb on - strand, within PFR28_00891at 963.792 kb on - strand, within PFR28_00891at 963.792 kb on - strand, within PFR28_00891at 963.911 kb on + strand, within PFR28_00891at 963.911 kb on + strand, within PFR28_00891at 963.911 kb on + strand, within PFR28_00891at 963.911 kb on + strand, within PFR28_00891at 963.911 kb on + strand, within PFR28_00891at 963.911 kb on + strand, within PFR28_00891at 963.911 kb on + strand, within PFR28_00891at 963.911 kb on + strand, within PFR28_00891at 963.911 kb on + strand, within PFR28_00891at 963.911 kb on + strand, within PFR28_00891at 963.911 kb on + strand, within PFR28_00891at 963.912 kb on - strand, within PFR28_00891at 963.912 kb on - strand, within PFR28_00891at 963.912 kb on - strand, within PFR28_00891at 963.912 kb on - strand, within PFR28_00891at 963.912 kb on - strand, within PFR28_00891at 963.912 kb on - strand, within PFR28_00891at 963.912 kb on - strand, within PFR28_00891at 963.912 kb on - strand, within PFR28_00891at 963.912 kb on - strand, within PFR28_00891at 963.912 kb on - strand, within PFR28_00891at 963.912 kb on - strand, within PFR28_00891at 963.912 kb on - strand, within PFR28_00891at 964.002 kb on - strandat 964.014 kb on + strandat 964.014 kb on + strandat 964.014 kb on + strandat 964.014 kb on + strandat 964.015 kb on - strandat 964.015 kb on - strandat 964.015 kb on - strandat 964.015 kb on - strandat 964.015 kb on - strandat 964.015 kb on - strandat 964.021 kb on + strandat 964.021 kb on + strandat 964.021 kb on + strandat 964.021 kb on + strandat 964.021 kb on + strandat 964.022 kb on - strandat 964.079 kb on - strandat 964.102 kb on + strandat 964.102 kb on + strandat 964.103 kb on - strandat 964.103 kb on - strandat 964.103 kb on - strandat 964.137 kb on + strandat 964.137 kb on + strandat 964.137 kb on + strandat 964.137 kb on + strandat 964.137 kb on + strandat 964.138 kb on - strandat 964.138 kb on - strandat 964.138 kb on - strandat 964.138 kb on - strandat 964.138 kb on - strandat 964.138 kb on - strandat 964.161 kb on + strandat 964.162 kb on - strandat 964.341 kb on + strand, within PFR28_00892at 964.341 kb on + strand, within PFR28_00892at 964.363 kb on - strand, within PFR28_00892at 964.363 kb on - strand, within PFR28_00892at 964.417 kb on + strand, within PFR28_00892at 964.443 kb on + strand, within PFR28_00892at 964.443 kb on + strand, within PFR28_00892at 964.443 kb on + strand, within PFR28_00892at 964.443 kb on + strand, within PFR28_00892at 964.443 kb on + strand, within PFR28_00892at 964.443 kb on + strand, within PFR28_00892at 964.443 kb on + strand, within PFR28_00892at 964.443 kb on + strand, within PFR28_00892at 964.443 kb on + strand, within PFR28_00892at 964.443 kb on + strand, within PFR28_00892at 964.444 kb on - strand, within PFR28_00892at 964.444 kb on - strand, within PFR28_00892at 964.444 kb on - strand, within PFR28_00892at 964.444 kb on - strand, within PFR28_00892at 964.444 kb on - strand, within PFR28_00892at 964.444 kb on - strand, within PFR28_00892at 964.444 kb on - strand, within PFR28_00892at 964.444 kb on - strand, within PFR28_00892at 964.444 kb on - strand, within PFR28_00892at 964.444 kb on - strand, within PFR28_00892at 964.587 kb on + strand, within PFR28_00892at 964.587 kb on + strand, within PFR28_00892at 964.588 kb on - strand, within PFR28_00892at 964.588 kb on - strand, within PFR28_00892at 964.588 kb on - strand, within PFR28_00892

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Per-strain Table

Position Strand Gene LocusTag Fraction Betaine (C) 2.5 mM
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962,346 - PFR28_00889 0.55 +0.2
962,415 + PFR28_00889 0.60 -0.9
962,913 - -0.4
962,913 - +0.6
963,034 + +0.1
963,034 + -0.0
963,034 + +0.6
963,034 + -0.1
963,034 + -0.8
963,034 + -1.5
963,035 - +0.1
963,035 - +0.4
963,096 + -0.2
963,096 + -0.8
963,097 - -1.4
963,097 - +1.0
963,099 + -0.1
963,100 - -0.2
963,129 - -1.1
963,140 + +0.4
963,141 - +0.7
963,141 - -2.5
963,296 + PFR28_00890 0.27 +0.3
963,296 + PFR28_00890 0.27 +0.5
963,296 + PFR28_00890 0.27 -1.1
963,296 + PFR28_00890 0.27 -0.9
963,296 + PFR28_00890 0.27 -1.4
963,296 + PFR28_00890 0.27 +1.8
963,297 - PFR28_00890 0.27 -0.9
963,297 - PFR28_00890 0.27 -1.5
963,297 - PFR28_00890 0.27 -0.2
963,297 - PFR28_00890 0.27 -0.9
963,377 + PFR28_00890 0.43 +1.6
963,377 + PFR28_00890 0.43 -0.1
963,378 - PFR28_00890 0.43 -0.6
963,378 - PFR28_00890 0.43 -1.2
963,452 + PFR28_00890 0.57 -2.7
963,452 + PFR28_00890 0.57 -0.2
963,452 + PFR28_00890 0.57 -0.0
963,453 - PFR28_00890 0.57 -0.5
963,500 + PFR28_00890 0.66 +0.4
963,500 + PFR28_00890 0.66 -1.7
963,501 - PFR28_00890 0.67 -0.2
963,501 - PFR28_00890 0.67 -0.3
963,685 + -2.0
963,685 + -2.4
963,791 + PFR28_00891 0.35 -2.2
963,791 + PFR28_00891 0.35 +1.8
963,791 + PFR28_00891 0.35 -1.2
963,792 - PFR28_00891 0.35 -1.7
963,792 - PFR28_00891 0.35 -0.8
963,792 - PFR28_00891 0.35 -0.0
963,792 - PFR28_00891 0.35 -1.3
963,911 + PFR28_00891 0.75 -1.0
963,911 + PFR28_00891 0.75 -0.4
963,911 + PFR28_00891 0.75 -0.4
963,911 + PFR28_00891 0.75 -1.2
963,911 + PFR28_00891 0.75 -2.7
963,911 + PFR28_00891 0.75 -0.8
963,911 + PFR28_00891 0.75 -0.0
963,911 + PFR28_00891 0.75 -0.3
963,911 + PFR28_00891 0.75 -1.7
963,911 + PFR28_00891 0.75 -1.7
963,911 + PFR28_00891 0.75 -2.3
963,912 - PFR28_00891 0.75 -0.2
963,912 - PFR28_00891 0.75 +1.4
963,912 - PFR28_00891 0.75 +0.3
963,912 - PFR28_00891 0.75 -3.0
963,912 - PFR28_00891 0.75 -2.8
963,912 - PFR28_00891 0.75 -1.4
963,912 - PFR28_00891 0.75 -1.7
963,912 - PFR28_00891 0.75 -1.3
963,912 - PFR28_00891 0.75 -0.0
963,912 - PFR28_00891 0.75 +1.9
963,912 - PFR28_00891 0.75 -0.7
963,912 - PFR28_00891 0.75 -0.2
964,002 - -1.2
964,014 + +0.2
964,014 + -0.3
964,014 + +0.3
964,014 + -1.1
964,015 - -0.5
964,015 - +0.1
964,015 - -0.5
964,015 - -1.0
964,015 - +0.6
964,015 - +0.0
964,021 + -2.8
964,021 + +0.6
964,021 + -1.2
964,021 + -1.2
964,021 + +1.0
964,022 - -3.6
964,079 - +0.6
964,102 + -0.1
964,102 + -0.7
964,103 - -0.6
964,103 - -1.0
964,103 - -1.1
964,137 + +1.1
964,137 + -2.3
964,137 + -2.5
964,137 + -0.7
964,137 + -1.7
964,138 - -0.1
964,138 - -1.3
964,138 - -1.2
964,138 - +0.4
964,138 - -0.4
964,138 - -1.1
964,161 + +0.8
964,162 - +1.2
964,341 + PFR28_00892 0.25 -0.4
964,341 + PFR28_00892 0.25 +0.0
964,363 - PFR28_00892 0.27 -1.2
964,363 - PFR28_00892 0.27 -0.1
964,417 + PFR28_00892 0.33 -0.2
964,443 + PFR28_00892 0.36 +0.3
964,443 + PFR28_00892 0.36 +0.6
964,443 + PFR28_00892 0.36 -1.5
964,443 + PFR28_00892 0.36 -0.9
964,443 + PFR28_00892 0.36 +0.1
964,443 + PFR28_00892 0.36 -2.0
964,443 + PFR28_00892 0.36 -2.6
964,443 + PFR28_00892 0.36 -2.0
964,443 + PFR28_00892 0.36 -1.4
964,443 + PFR28_00892 0.36 -0.0
964,444 - PFR28_00892 0.36 -1.5
964,444 - PFR28_00892 0.36 -0.3
964,444 - PFR28_00892 0.36 +0.5
964,444 - PFR28_00892 0.36 -0.2
964,444 - PFR28_00892 0.36 -0.3
964,444 - PFR28_00892 0.36 -0.5
964,444 - PFR28_00892 0.36 -0.3
964,444 - PFR28_00892 0.36 +0.8
964,444 - PFR28_00892 0.36 -2.1
964,444 - PFR28_00892 0.36 -0.4
964,587 + PFR28_00892 0.51 +1.3
964,587 + PFR28_00892 0.51 +0.4
964,588 - PFR28_00892 0.51 +0.0
964,588 - PFR28_00892 0.51 -2.3
964,588 - PFR28_00892 0.51 +0.4

Or see this region's nucleotide sequence