Strain Fitness in Pseudomonas sp. RS175 around PFR28_00157

Experiment: Betaine (C) 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00155 and PFR28_00156 overlap by 4 nucleotidesPFR28_00156 and PFR28_00157 are separated by 32 nucleotidesPFR28_00157 and PFR28_00158 are separated by 56 nucleotides PFR28_00155: PFR28_00155 - Cell shape-determining protein MreC, at 179,873 to 180,925 _00155 PFR28_00156: PFR28_00156 - Rod shape-determining protein MreD, at 180,922 to 181,410 _00156 PFR28_00157: PFR28_00157 - dTTP/UTP pyrophosphatase, at 181,443 to 182,039 _00157 PFR28_00158: PFR28_00158 - Ribonuclease G, at 182,096 to 183,553 _00158 Position (kb) 181 182 183Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 180.930 kb on + strandat 180.930 kb on + strandat 180.930 kb on + strandat 180.931 kb on - strandat 181.129 kb on + strand, within PFR28_00156at 181.277 kb on + strand, within PFR28_00156at 181.277 kb on + strand, within PFR28_00156at 181.277 kb on + strand, within PFR28_00156at 181.277 kb on + strand, within PFR28_00156at 181.277 kb on + strand, within PFR28_00156at 181.277 kb on + strand, within PFR28_00156at 181.277 kb on + strand, within PFR28_00156at 181.277 kb on + strand, within PFR28_00156at 181.278 kb on - strand, within PFR28_00156at 181.278 kb on - strand, within PFR28_00156at 181.278 kb on - strand, within PFR28_00156at 181.278 kb on - strand, within PFR28_00156at 181.278 kb on - strand, within PFR28_00156at 181.455 kb on + strandat 181.455 kb on + strandat 181.572 kb on + strand, within PFR28_00157at 181.572 kb on + strand, within PFR28_00157at 181.573 kb on - strand, within PFR28_00157at 181.573 kb on - strand, within PFR28_00157at 181.573 kb on - strand, within PFR28_00157at 181.857 kb on + strand, within PFR28_00157at 181.896 kb on + strand, within PFR28_00157at 181.896 kb on + strand, within PFR28_00157at 181.896 kb on + strand, within PFR28_00157at 181.896 kb on + strand, within PFR28_00157at 181.896 kb on + strand, within PFR28_00157at 181.896 kb on + strand, within PFR28_00157at 181.896 kb on + strand, within PFR28_00157at 181.896 kb on + strand, within PFR28_00157at 181.896 kb on + strand, within PFR28_00157at 181.896 kb on + strand, within PFR28_00157at 181.897 kb on - strand, within PFR28_00157at 181.897 kb on - strand, within PFR28_00157at 181.897 kb on - strand, within PFR28_00157at 181.901 kb on + strand, within PFR28_00157at 181.902 kb on - strand, within PFR28_00157at 181.902 kb on - strand, within PFR28_00157at 181.948 kb on - strand, within PFR28_00157at 181.948 kb on - strand, within PFR28_00157at 182.009 kb on - strandat 182.009 kb on - strandat 182.009 kb on - strandat 182.009 kb on - strandat 182.066 kb on - strandat 182.188 kb on + strandat 182.188 kb on + strandat 182.189 kb on - strandat 182.189 kb on - strandat 182.215 kb on + strandat 182.216 kb on - strandat 182.216 kb on - strandat 182.219 kb on + strandat 182.219 kb on + strandat 182.219 kb on + strandat 182.220 kb on - strandat 182.220 kb on - strandat 182.453 kb on + strand, within PFR28_00158at 182.462 kb on + strand, within PFR28_00158at 182.462 kb on + strand, within PFR28_00158at 182.462 kb on + strand, within PFR28_00158at 182.462 kb on + strand, within PFR28_00158at 182.462 kb on + strand, within PFR28_00158at 182.462 kb on + strand, within PFR28_00158at 182.462 kb on + strand, within PFR28_00158at 182.462 kb on + strand, within PFR28_00158at 182.462 kb on + strand, within PFR28_00158at 182.462 kb on + strand, within PFR28_00158at 182.463 kb on - strand, within PFR28_00158at 182.463 kb on - strand, within PFR28_00158at 182.463 kb on - strand, within PFR28_00158at 182.463 kb on - strand, within PFR28_00158at 182.463 kb on - strand, within PFR28_00158at 182.588 kb on - strand, within PFR28_00158at 182.646 kb on - strand, within PFR28_00158at 182.712 kb on - strand, within PFR28_00158at 182.712 kb on - strand, within PFR28_00158at 182.712 kb on - strand, within PFR28_00158at 182.861 kb on + strand, within PFR28_00158at 182.955 kb on - strand, within PFR28_00158

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Per-strain Table

Position Strand Gene LocusTag Fraction Betaine (C) 2.5 mM
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180,930 + +0.4
180,930 + +0.6
180,930 + +1.9
180,931 - +0.3
181,129 + PFR28_00156 0.42 +1.9
181,277 + PFR28_00156 0.73 +0.5
181,277 + PFR28_00156 0.73 +2.7
181,277 + PFR28_00156 0.73 -0.3
181,277 + PFR28_00156 0.73 +1.6
181,277 + PFR28_00156 0.73 +0.0
181,277 + PFR28_00156 0.73 +0.1
181,277 + PFR28_00156 0.73 +0.3
181,277 + PFR28_00156 0.73 +0.0
181,278 - PFR28_00156 0.73 -0.4
181,278 - PFR28_00156 0.73 +0.2
181,278 - PFR28_00156 0.73 +1.9
181,278 - PFR28_00156 0.73 +1.1
181,278 - PFR28_00156 0.73 -0.3
181,455 + +1.4
181,455 + +0.3
181,572 + PFR28_00157 0.22 +0.2
181,572 + PFR28_00157 0.22 +0.2
181,573 - PFR28_00157 0.22 +0.8
181,573 - PFR28_00157 0.22 -0.9
181,573 - PFR28_00157 0.22 -0.6
181,857 + PFR28_00157 0.69 +0.9
181,896 + PFR28_00157 0.76 +1.1
181,896 + PFR28_00157 0.76 +0.7
181,896 + PFR28_00157 0.76 -0.5
181,896 + PFR28_00157 0.76 +0.1
181,896 + PFR28_00157 0.76 +0.3
181,896 + PFR28_00157 0.76 +0.9
181,896 + PFR28_00157 0.76 +0.3
181,896 + PFR28_00157 0.76 +0.9
181,896 + PFR28_00157 0.76 +0.8
181,896 + PFR28_00157 0.76 +1.0
181,897 - PFR28_00157 0.76 +2.3
181,897 - PFR28_00157 0.76 +0.2
181,897 - PFR28_00157 0.76 -3.3
181,901 + PFR28_00157 0.77 +0.1
181,902 - PFR28_00157 0.77 +0.1
181,902 - PFR28_00157 0.77 -0.1
181,948 - PFR28_00157 0.85 -2.3
181,948 - PFR28_00157 0.85 -1.4
182,009 - -0.9
182,009 - -0.5
182,009 - -0.0
182,009 - +0.1
182,066 - -2.7
182,188 + -3.2
182,188 + +0.9
182,189 - +1.7
182,189 - -3.1
182,215 + -1.3
182,216 - -2.5
182,216 - -0.8
182,219 + -2.9
182,219 + -0.6
182,219 + -0.7
182,220 - -2.6
182,220 - -1.4
182,453 + PFR28_00158 0.24 +0.1
182,462 + PFR28_00158 0.25 -0.7
182,462 + PFR28_00158 0.25 +0.2
182,462 + PFR28_00158 0.25 +1.4
182,462 + PFR28_00158 0.25 -0.9
182,462 + PFR28_00158 0.25 +0.7
182,462 + PFR28_00158 0.25 -0.3
182,462 + PFR28_00158 0.25 +0.7
182,462 + PFR28_00158 0.25 -3.1
182,462 + PFR28_00158 0.25 +0.2
182,462 + PFR28_00158 0.25 -0.6
182,463 - PFR28_00158 0.25 +0.7
182,463 - PFR28_00158 0.25 -1.5
182,463 - PFR28_00158 0.25 +0.4
182,463 - PFR28_00158 0.25 -1.6
182,463 - PFR28_00158 0.25 +0.1
182,588 - PFR28_00158 0.34 -1.4
182,646 - PFR28_00158 0.38 -0.1
182,712 - PFR28_00158 0.42 -1.1
182,712 - PFR28_00158 0.42 -2.6
182,712 - PFR28_00158 0.42 +1.8
182,861 + PFR28_00158 0.52 -0.9
182,955 - PFR28_00158 0.59 -1.6

Or see this region's nucleotide sequence