Experiment: D-(-)-lyxose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3623 and Atu3624 are separated by 114 nucleotides Atu3624 and Atu3625 are separated by 19 nucleotides Atu3625 and Atu3626 are separated by 5 nucleotides Atu3626 and Atu3627 overlap by 4 nucleotides Atu3627 and Atu3628 are separated by 32 nucleotides Atu3628 and Atu3629 overlap by 4 nucleotides
Atu3623: Atu3623 - DnaJ family molecular chaperone, at 677,605 to 678,240
Atu3623
Atu3624: Atu3624 - stress induced morphogen, at 678,355 to 678,636
Atu3624
Atu3625: Atu3625 - 3-dehydroquinate synthase, at 678,656 to 679,789
Atu3625
Atu3626: Atu3626 - shikimate kinase, at 679,795 to 680,376
Atu3626
Atu3627: Atu3627 - hypothetical protein, at 680,373 to 680,531
Atu3627
Atu3628: Atu3628 - hypothetical protein, at 680,564 to 680,737
Atu3628
Atu3629: Atu3629 - site-specific tyrosine recombinase XerD, at 680,734 to 681,729
Atu3629
Position (kb) 678
679
680 Strain fitness (log2 ratio) -1
0
1
2 at 677.723 kb on - strand, within Atu3623 at 677.763 kb on - strand, within Atu3623 at 677.817 kb on - strand, within Atu3623 at 677.828 kb on + strand, within Atu3623 at 677.906 kb on + strand, within Atu3623 at 677.926 kb on - strand, within Atu3623 at 677.953 kb on - strand, within Atu3623 at 678.297 kb on + strand at 678.305 kb on + strand at 678.305 kb on + strand at 678.305 kb on + strand at 678.313 kb on - strand at 678.391 kb on - strand, within Atu3624 at 678.410 kb on + strand, within Atu3624 at 678.411 kb on + strand, within Atu3624 at 678.419 kb on - strand, within Atu3624 at 678.430 kb on + strand, within Atu3624 at 678.488 kb on - strand, within Atu3624 at 678.522 kb on + strand, within Atu3624 at 678.530 kb on - strand, within Atu3624 at 678.580 kb on + strand, within Atu3624 at 678.630 kb on + strand at 678.630 kb on + strand at 678.630 kb on + strand at 678.638 kb on - strand at 678.638 kb on - strand at 678.638 kb on - strand at 678.638 kb on - strand at 678.647 kb on + strand at 678.647 kb on + strand at 678.647 kb on + strand at 678.647 kb on + strand at 678.647 kb on + strand at 678.647 kb on + strand at 678.647 kb on + strand at 678.647 kb on + strand at 678.655 kb on - strand at 678.655 kb on - strand at 678.655 kb on - strand at 678.655 kb on - strand at 678.655 kb on - strand at 678.661 kb on - strand at 679.814 kb on - strand at 680.413 kb on + strand, within Atu3627 at 680.489 kb on - strand, within Atu3627 at 680.614 kb on + strand, within Atu3628 at 680.638 kb on + strand, within Atu3628 at 680.646 kb on - strand, within Atu3628 at 680.661 kb on + strand, within Atu3628 at 680.667 kb on + strand, within Atu3628 at 680.685 kb on + strand, within Atu3628 at 680.702 kb on - strand, within Atu3628 at 680.717 kb on - strand, within Atu3628 at 680.738 kb on - strand at 680.745 kb on + strand at 680.753 kb on - strand at 680.753 kb on - strand at 680.772 kb on + strand at 680.772 kb on + strand at 680.780 kb on - strand at 680.780 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-(-)-lyxose (C) remove 677,723 - Atu3623 0.19 +1.0 677,763 - Atu3623 0.25 +1.1 677,817 - Atu3623 0.33 +1.1 677,828 + Atu3623 0.35 +2.0 677,906 + Atu3623 0.47 +0.8 677,926 - Atu3623 0.50 +0.7 677,953 - Atu3623 0.55 +0.8 678,297 + +0.4 678,305 + -0.3 678,305 + +0.2 678,305 + +0.1 678,313 - +0.2 678,391 - Atu3624 0.13 +0.1 678,410 + Atu3624 0.20 +1.1 678,411 + Atu3624 0.20 -0.5 678,419 - Atu3624 0.23 +0.3 678,430 + Atu3624 0.27 -0.1 678,488 - Atu3624 0.47 +0.5 678,522 + Atu3624 0.59 +0.2 678,530 - Atu3624 0.62 -0.6 678,580 + Atu3624 0.80 +0.0 678,630 + +0.4 678,630 + +0.2 678,630 + -0.1 678,638 - -0.0 678,638 - +0.8 678,638 - -0.4 678,638 - +0.2 678,647 + +0.2 678,647 + +0.3 678,647 + -0.8 678,647 + +0.2 678,647 + -0.9 678,647 + +0.5 678,647 + -0.2 678,647 + -0.0 678,655 - -0.4 678,655 - +0.6 678,655 - +0.2 678,655 - +0.1 678,655 - +0.1 678,661 - -0.7 679,814 - +0.7 680,413 + Atu3627 0.25 -0.3 680,489 - Atu3627 0.73 +0.3 680,614 + Atu3628 0.29 -0.4 680,638 + Atu3628 0.43 -0.0 680,646 - Atu3628 0.47 -0.2 680,661 + Atu3628 0.56 -0.4 680,667 + Atu3628 0.59 +1.6 680,685 + Atu3628 0.70 -0.6 680,702 - Atu3628 0.79 +1.1 680,717 - Atu3628 0.88 -0.2 680,738 - +0.0 680,745 + +0.4 680,753 - -0.2 680,753 - +0.4 680,772 + +0.2 680,772 + -0.4 680,780 - -0.8 680,780 - +1.6
Or see this region's nucleotide sequence