Experiment: D-(-)-lyxose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3460 and Atu3461 are separated by 27 nucleotides Atu3461 and Atu3462 are separated by 94 nucleotides Atu3462 and Atu3463 are separated by 128 nucleotides Atu3463 and Atu3464 are separated by 26 nucleotides
Atu3460: Atu3460 - RhtB family transporter, at 508,469 to 509,101
Atu3460
Atu3461: Atu3461 - GntR family transcriptional regulator, at 509,129 to 509,857
Atu3461
Atu3462: Atu3462 - AraC family transcriptional regulator, at 509,952 to 510,935
Atu3462
Atu3463: Atu3463 - non-heme chloroperoxidase, at 511,064 to 511,891
Atu3463
Atu3464: Atu3464 - dehydrogenase, at 511,918 to 512,709
Atu3464
Position (kb) 509
510
511 Strain fitness (log2 ratio) -1
0
1
2 at 509.001 kb on - strand, within Atu3460 at 509.058 kb on + strand at 509.059 kb on - strand at 509.078 kb on - strand at 509.148 kb on - strand at 509.175 kb on + strand at 509.201 kb on + strand at 509.277 kb on + strand, within Atu3461 at 509.525 kb on + strand, within Atu3461 at 509.688 kb on - strand, within Atu3461 at 509.704 kb on - strand, within Atu3461 at 509.823 kb on + strand at 509.940 kb on + strand at 510.163 kb on - strand, within Atu3462 at 510.163 kb on - strand, within Atu3462 at 510.275 kb on - strand, within Atu3462 at 510.295 kb on - strand, within Atu3462 at 510.307 kb on - strand, within Atu3462 at 510.322 kb on + strand, within Atu3462 at 510.427 kb on - strand, within Atu3462 at 510.437 kb on + strand, within Atu3462 at 510.438 kb on - strand, within Atu3462 at 510.699 kb on + strand, within Atu3462 at 510.726 kb on + strand, within Atu3462 at 510.726 kb on + strand, within Atu3462 at 510.739 kb on - strand, within Atu3462 at 510.739 kb on - strand, within Atu3462 at 510.773 kb on + strand, within Atu3462 at 510.775 kb on + strand, within Atu3462 at 510.863 kb on + strand at 510.920 kb on + strand at 511.010 kb on - strand at 511.010 kb on - strand at 511.108 kb on + strand at 511.108 kb on + strand at 511.108 kb on + strand at 511.184 kb on + strand, within Atu3463 at 511.253 kb on + strand, within Atu3463 at 511.261 kb on - strand, within Atu3463 at 511.266 kb on - strand, within Atu3463 at 511.423 kb on + strand, within Atu3463 at 511.629 kb on - strand, within Atu3463 at 511.702 kb on - strand, within Atu3463 at 511.708 kb on - strand, within Atu3463 at 511.824 kb on + strand at 511.855 kb on + strand at 511.863 kb on - strand at 511.887 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-(-)-lyxose (C) remove 509,001 - Atu3460 0.84 -0.1 509,058 + +0.2 509,059 - +0.4 509,078 - +0.1 509,148 - +0.1 509,175 + +0.1 509,201 + -0.0 509,277 + Atu3461 0.20 +0.1 509,525 + Atu3461 0.54 +0.7 509,688 - Atu3461 0.77 -0.9 509,704 - Atu3461 0.79 +1.1 509,823 + -0.0 509,940 + -0.1 510,163 - Atu3462 0.21 +1.2 510,163 - Atu3462 0.21 +0.7 510,275 - Atu3462 0.33 +0.2 510,295 - Atu3462 0.35 +0.2 510,307 - Atu3462 0.36 -1.4 510,322 + Atu3462 0.38 +0.1 510,427 - Atu3462 0.48 +0.6 510,437 + Atu3462 0.49 +0.7 510,438 - Atu3462 0.49 +0.1 510,699 + Atu3462 0.76 +0.6 510,726 + Atu3462 0.79 +0.5 510,726 + Atu3462 0.79 +1.8 510,739 - Atu3462 0.80 -0.0 510,739 - Atu3462 0.80 +0.3 510,773 + Atu3462 0.83 -0.2 510,775 + Atu3462 0.84 +0.2 510,863 + -0.3 510,920 + +0.4 511,010 - +0.1 511,010 - +0.8 511,108 + -0.1 511,108 + -0.3 511,108 + +0.5 511,184 + Atu3463 0.14 -0.4 511,253 + Atu3463 0.23 -0.3 511,261 - Atu3463 0.24 -0.4 511,266 - Atu3463 0.24 +0.2 511,423 + Atu3463 0.43 -0.3 511,629 - Atu3463 0.68 +0.1 511,702 - Atu3463 0.77 +0.3 511,708 - Atu3463 0.78 -0.8 511,824 + -0.0 511,855 + +0.1 511,863 - +0.2 511,887 + +0.2
Or see this region's nucleotide sequence