Experiment: D-(-)-lyxose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3025 and Atu3026 are separated by 15 nucleotides Atu3026 and Atu8093 are separated by 16 nucleotides
Atu3025: Atu3025 - oligo alginate lyase, at 18,008 to 20,338
Atu3025
Atu3026: Atu3026 - short chain dehydrogenase, at 20,354 to 21,103
Atu3026
Atu8093: Atu8093 - hypothetical protein, at 21,120 to 22,289
Atu8093
Position (kb) 20
21
22 Strain fitness (log2 ratio) -1
0
1
2
3 at 19.357 kb on + strand, within Atu3025 at 19.357 kb on + strand, within Atu3025 at 19.357 kb on + strand, within Atu3025 at 19.365 kb on - strand, within Atu3025 at 19.365 kb on - strand, within Atu3025 at 19.365 kb on - strand, within Atu3025 at 19.365 kb on - strand, within Atu3025 at 19.412 kb on + strand, within Atu3025 at 19.456 kb on + strand, within Atu3025 at 19.456 kb on + strand, within Atu3025 at 19.620 kb on + strand, within Atu3025 at 19.620 kb on + strand, within Atu3025 at 19.628 kb on - strand, within Atu3025 at 19.733 kb on + strand, within Atu3025 at 19.759 kb on - strand, within Atu3025 at 19.776 kb on - strand, within Atu3025 at 19.786 kb on - strand, within Atu3025 at 19.961 kb on + strand, within Atu3025 at 20.021 kb on - strand, within Atu3025 at 20.084 kb on + strand, within Atu3025 at 20.092 kb on - strand, within Atu3025 at 20.107 kb on - strand at 20.115 kb on + strand at 20.204 kb on - strand at 20.210 kb on - strand at 20.332 kb on + strand at 20.339 kb on + strand at 20.355 kb on - strand at 20.580 kb on - strand, within Atu3026 at 20.603 kb on - strand, within Atu3026 at 20.603 kb on - strand, within Atu3026 at 20.603 kb on - strand, within Atu3026 at 20.754 kb on - strand, within Atu3026 at 20.772 kb on - strand, within Atu3026 at 20.917 kb on - strand, within Atu3026 at 20.922 kb on - strand, within Atu3026 at 20.954 kb on - strand, within Atu3026 at 20.954 kb on - strand, within Atu3026 at 20.954 kb on - strand, within Atu3026 at 21.044 kb on - strand at 21.113 kb on - strand at 21.134 kb on + strand at 21.142 kb on - strand at 21.142 kb on - strand at 21.142 kb on - strand at 21.179 kb on + strand at 21.235 kb on + strand at 21.241 kb on + strand, within Atu8093 at 21.312 kb on - strand, within Atu8093 at 21.385 kb on + strand, within Atu8093 at 21.508 kb on + strand, within Atu8093 at 21.516 kb on - strand, within Atu8093 at 21.516 kb on - strand, within Atu8093 at 21.671 kb on - strand, within Atu8093 at 21.676 kb on + strand, within Atu8093 at 21.790 kb on - strand, within Atu8093 at 21.968 kb on + strand, within Atu8093
Per-strain Table
Position Strand Gene LocusTag Fraction D-(-)-lyxose (C) remove 19,357 + Atu3025 0.58 +0.1 19,357 + Atu3025 0.58 +0.7 19,357 + Atu3025 0.58 -0.2 19,365 - Atu3025 0.58 +0.5 19,365 - Atu3025 0.58 +0.5 19,365 - Atu3025 0.58 +0.9 19,365 - Atu3025 0.58 +0.3 19,412 + Atu3025 0.60 +0.5 19,456 + Atu3025 0.62 +1.3 19,456 + Atu3025 0.62 +0.3 19,620 + Atu3025 0.69 +3.0 19,620 + Atu3025 0.69 +1.2 19,628 - Atu3025 0.69 +1.5 19,733 + Atu3025 0.74 +0.1 19,759 - Atu3025 0.75 +1.2 19,776 - Atu3025 0.76 +1.2 19,786 - Atu3025 0.76 +0.1 19,961 + Atu3025 0.84 +0.6 20,021 - Atu3025 0.86 -0.0 20,084 + Atu3025 0.89 +0.4 20,092 - Atu3025 0.89 +0.5 20,107 - +1.1 20,115 + +1.2 20,204 - +0.1 20,210 - +0.5 20,332 + +0.2 20,339 + +1.2 20,355 - +1.0 20,580 - Atu3026 0.30 +1.1 20,603 - Atu3026 0.33 +0.5 20,603 - Atu3026 0.33 +2.2 20,603 - Atu3026 0.33 +0.8 20,754 - Atu3026 0.53 -0.9 20,772 - Atu3026 0.56 +0.4 20,917 - Atu3026 0.75 +0.7 20,922 - Atu3026 0.76 +0.3 20,954 - Atu3026 0.80 +0.8 20,954 - Atu3026 0.80 +0.5 20,954 - Atu3026 0.80 +0.5 21,044 - +1.0 21,113 - +0.4 21,134 + +0.3 21,142 - +0.4 21,142 - +0.3 21,142 - +1.0 21,179 + +0.0 21,235 + +0.2 21,241 + Atu8093 0.10 +0.3 21,312 - Atu8093 0.16 +1.4 21,385 + Atu8093 0.23 +0.4 21,508 + Atu8093 0.33 -0.1 21,516 - Atu8093 0.34 +1.4 21,516 - Atu8093 0.34 -0.2 21,671 - Atu8093 0.47 +0.4 21,676 + Atu8093 0.48 +3.0 21,790 - Atu8093 0.57 +0.7 21,968 + Atu8093 0.72 +0.6
Or see this region's nucleotide sequence