Strain Fitness in Agrobacterium fabrum C58 around Atu0307

Experiment: D-(-)-lyxose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0306 and Atu0307 are separated by 11 nucleotidesAtu0307 and Atu0308 are separated by 10 nucleotides Atu0306: Atu0306 - ABC transporter, membrane spanning protein (sn-Glycerol-3-phosphate), at 298,594 to 299,475 Atu0306 Atu0307: Atu0307 - ABC transporter, membrane spanning protein (sn-Glycerol-3-phosphate), at 299,487 to 300,329 Atu0307 Atu0308: Atu0308 - ABC transporter, nucleotide binding/ATPase protein (sn-Glycerol-3-phosphate), at 300,340 to 301,440 Atu0308 Position (kb) 299 300 301Strain fitness (log2 ratio) -2 -1 0 1 2at 298.489 kb on + strandat 298.489 kb on + strandat 298.489 kb on + strandat 298.504 kb on + strandat 298.517 kb on - strandat 298.517 kb on - strandat 298.560 kb on + strandat 298.568 kb on - strandat 298.608 kb on + strandat 298.625 kb on + strandat 298.816 kb on + strand, within Atu0306at 298.858 kb on - strand, within Atu0306at 298.911 kb on - strand, within Atu0306at 298.935 kb on - strand, within Atu0306at 299.022 kb on - strand, within Atu0306at 299.028 kb on + strand, within Atu0306at 299.073 kb on - strand, within Atu0306at 299.083 kb on + strand, within Atu0306at 299.193 kb on + strand, within Atu0306at 299.201 kb on - strand, within Atu0306at 299.230 kb on + strand, within Atu0306at 299.258 kb on + strand, within Atu0306at 299.276 kb on + strand, within Atu0306at 299.276 kb on - strand, within Atu0306at 299.276 kb on - strand, within Atu0306at 299.312 kb on - strand, within Atu0306at 299.334 kb on + strand, within Atu0306at 299.334 kb on + strand, within Atu0306at 299.344 kb on + strand, within Atu0306at 299.439 kb on - strandat 299.492 kb on - strandat 299.502 kb on + strandat 299.545 kb on - strandat 299.574 kb on + strand, within Atu0307at 299.622 kb on - strand, within Atu0307at 299.694 kb on + strand, within Atu0307at 299.702 kb on - strand, within Atu0307at 299.817 kb on + strand, within Atu0307at 299.848 kb on - strand, within Atu0307at 299.880 kb on - strand, within Atu0307at 300.004 kb on - strand, within Atu0307at 300.062 kb on + strand, within Atu0307at 300.070 kb on - strand, within Atu0307at 300.109 kb on + strand, within Atu0307at 300.109 kb on + strand, within Atu0307at 300.117 kb on - strand, within Atu0307at 300.117 kb on - strand, within Atu0307at 300.122 kb on + strand, within Atu0307at 300.122 kb on + strand, within Atu0307at 300.122 kb on + strand, within Atu0307at 300.130 kb on - strand, within Atu0307at 300.147 kb on + strand, within Atu0307at 300.175 kb on + strand, within Atu0307at 300.195 kb on + strand, within Atu0307at 300.202 kb on - strand, within Atu0307at 300.262 kb on + strandat 300.301 kb on + strandat 300.363 kb on + strandat 300.372 kb on + strandat 300.400 kb on - strandat 300.468 kb on + strand, within Atu0308at 300.476 kb on - strand, within Atu0308at 300.515 kb on + strand, within Atu0308at 300.591 kb on - strand, within Atu0308at 300.684 kb on + strand, within Atu0308at 300.716 kb on - strand, within Atu0308at 300.727 kb on - strand, within Atu0308at 300.742 kb on + strand, within Atu0308at 300.742 kb on + strand, within Atu0308at 300.819 kb on + strand, within Atu0308at 300.825 kb on + strand, within Atu0308at 300.833 kb on - strand, within Atu0308at 300.854 kb on - strand, within Atu0308at 300.867 kb on + strand, within Atu0308at 300.888 kb on + strand, within Atu0308at 300.907 kb on - strand, within Atu0308at 300.921 kb on - strand, within Atu0308at 300.924 kb on + strand, within Atu0308at 300.924 kb on + strand, within Atu0308at 300.924 kb on + strand, within Atu0308at 300.924 kb on + strand, within Atu0308at 300.924 kb on + strand, within Atu0308at 300.924 kb on + strand, within Atu0308at 300.932 kb on - strand, within Atu0308at 300.932 kb on - strand, within Atu0308at 300.932 kb on - strand, within Atu0308at 300.979 kb on + strand, within Atu0308at 300.984 kb on + strand, within Atu0308at 300.996 kb on + strand, within Atu0308at 301.004 kb on - strand, within Atu0308at 301.013 kb on + strand, within Atu0308at 301.018 kb on + strand, within Atu0308at 301.019 kb on - strand, within Atu0308at 301.070 kb on + strand, within Atu0308at 301.078 kb on - strand, within Atu0308at 301.147 kb on - strand, within Atu0308at 301.195 kb on + strand, within Atu0308at 301.217 kb on + strand, within Atu0308at 301.225 kb on - strand, within Atu0308

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Per-strain Table

Position Strand Gene LocusTag Fraction D-(-)-lyxose (C)
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298,489 + +0.6
298,489 + -0.8
298,489 + +0.1
298,504 + +0.4
298,517 - -1.0
298,517 - +0.4
298,560 + -0.2
298,568 - +0.4
298,608 + -0.7
298,625 + +0.1
298,816 + Atu0306 0.25 -0.2
298,858 - Atu0306 0.30 -0.1
298,911 - Atu0306 0.36 -0.2
298,935 - Atu0306 0.39 +0.3
299,022 - Atu0306 0.49 -0.1
299,028 + Atu0306 0.49 +0.3
299,073 - Atu0306 0.54 -0.2
299,083 + Atu0306 0.55 +0.2
299,193 + Atu0306 0.68 -0.7
299,201 - Atu0306 0.69 +0.6
299,230 + Atu0306 0.72 +0.3
299,258 + Atu0306 0.75 -0.8
299,276 + Atu0306 0.77 +0.2
299,276 - Atu0306 0.77 +1.1
299,276 - Atu0306 0.77 -0.1
299,312 - Atu0306 0.81 -0.4
299,334 + Atu0306 0.84 +0.6
299,334 + Atu0306 0.84 +0.4
299,344 + Atu0306 0.85 +2.0
299,439 - -0.1
299,492 - -0.0
299,502 + -0.1
299,545 - +0.1
299,574 + Atu0307 0.10 -0.6
299,622 - Atu0307 0.16 -0.3
299,694 + Atu0307 0.25 -0.1
299,702 - Atu0307 0.26 +0.4
299,817 + Atu0307 0.39 -1.3
299,848 - Atu0307 0.43 -0.3
299,880 - Atu0307 0.47 -0.3
300,004 - Atu0307 0.61 +0.1
300,062 + Atu0307 0.68 +0.2
300,070 - Atu0307 0.69 -0.7
300,109 + Atu0307 0.74 -0.3
300,109 + Atu0307 0.74 -0.1
300,117 - Atu0307 0.75 -0.3
300,117 - Atu0307 0.75 -1.6
300,122 + Atu0307 0.75 -0.1
300,122 + Atu0307 0.75 -0.2
300,122 + Atu0307 0.75 -0.3
300,130 - Atu0307 0.76 -0.7
300,147 + Atu0307 0.78 -1.0
300,175 + Atu0307 0.82 -0.5
300,195 + Atu0307 0.84 -0.2
300,202 - Atu0307 0.85 -0.2
300,262 + -0.2
300,301 + -0.3
300,363 + -0.0
300,372 + +0.2
300,400 - +0.2
300,468 + Atu0308 0.12 +1.1
300,476 - Atu0308 0.12 +0.3
300,515 + Atu0308 0.16 -0.0
300,591 - Atu0308 0.23 +1.0
300,684 + Atu0308 0.31 +0.3
300,716 - Atu0308 0.34 +0.0
300,727 - Atu0308 0.35 -0.7
300,742 + Atu0308 0.37 +1.1
300,742 + Atu0308 0.37 -0.0
300,819 + Atu0308 0.44 -0.3
300,825 + Atu0308 0.44 -0.6
300,833 - Atu0308 0.45 -0.4
300,854 - Atu0308 0.47 -2.5
300,867 + Atu0308 0.48 +0.2
300,888 + Atu0308 0.50 -0.5
300,907 - Atu0308 0.51 -0.0
300,921 - Atu0308 0.53 +0.6
300,924 + Atu0308 0.53 -0.2
300,924 + Atu0308 0.53 +0.3
300,924 + Atu0308 0.53 +0.5
300,924 + Atu0308 0.53 +0.8
300,924 + Atu0308 0.53 +0.8
300,924 + Atu0308 0.53 +1.4
300,932 - Atu0308 0.54 +0.1
300,932 - Atu0308 0.54 -0.1
300,932 - Atu0308 0.54 -0.6
300,979 + Atu0308 0.58 +0.1
300,984 + Atu0308 0.58 +0.3
300,996 + Atu0308 0.60 -0.2
301,004 - Atu0308 0.60 +0.2
301,013 + Atu0308 0.61 -0.1
301,018 + Atu0308 0.62 +0.4
301,019 - Atu0308 0.62 -0.1
301,070 + Atu0308 0.66 +0.6
301,078 - Atu0308 0.67 -0.3
301,147 - Atu0308 0.73 +1.2
301,195 + Atu0308 0.78 +0.6
301,217 + Atu0308 0.80 +1.0
301,225 - Atu0308 0.80 +0.2

Or see this region's nucleotide sequence