Strain Fitness in Escherichia coli BW25113 around b4179

Experiment: methylglyoxal 0.008 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	methylglyoxal 0.008 vol%
4,403,855	-	purA	b4177	0.88	+0.1
4,403,965	+				+1.2
4,403,967	-				-0.3
4,404,050	+				+1.2
4,404,050	+				+0.1
4,404,050	+				+0.4
4,404,050	+				+3.0
4,404,070	-				-3.3
4,404,095	-				-0.7
4,404,095	-				-3.1
4,404,097	+				+2.4
4,404,097	+				+1.1
4,404,169	-				-2.2
4,404,254	+				-0.3
4,404,311	+	yjeB	b4178	0.23	-0.3
4,404,311	+	yjeB	b4178	0.23	-0.9
4,404,312	+	yjeB	b4178	0.23	+1.7
4,404,312	+	yjeB	b4178	0.23	+0.6
4,404,364	-	yjeB	b4178	0.35	+0.1
4,404,364	-	yjeB	b4178	0.35	-1.9
4,404,379	-	yjeB	b4178	0.39	-1.7
4,404,379	-	yjeB	b4178	0.39	-0.5
4,404,490	-	yjeB	b4178	0.65	-1.2
4,404,536	+	yjeB	b4178	0.76	+1.3
4,404,536	+	yjeB	b4178	0.76	+1.1
4,404,536	+	yjeB	b4178	0.76	-2.1
4,404,536	+	yjeB	b4178	0.76	+1.5
4,404,536	+	yjeB	b4178	0.76	+1.7
4,404,544	-	yjeB	b4178	0.78	-1.5
4,404,544	-	yjeB	b4178	0.78	+0.5
4,404,567	+	yjeB	b4178	0.83	+0.6
4,404,583	-	yjeB	b4178	0.87	-2.4
4,404,600	-				-1.9
4,404,620	-				+1.1
4,404,695	+				-2.1
4,404,695	+				-2.1
4,404,806	-				+0.1
4,404,819	-				+0.1
4,404,873	-				-2.1
4,404,898	+				+1.1
4,404,898	+				-1.1
4,404,898	+				-1.5
4,404,928	+	vacB	b4179	0.10	+2.1
4,404,928	+	vacB	b4179	0.10	-0.5
4,404,952	+	vacB	b4179	0.11	+2.1
4,404,966	+	vacB	b4179	0.12	-2.1
4,404,966	+	vacB	b4179	0.12	-1.7
4,405,013	-	vacB	b4179	0.14	-1.2
4,405,066	-	vacB	b4179	0.16	+0.1
4,405,066	-	vacB	b4179	0.16	-1.5
4,405,080	-	vacB	b4179	0.17	+1.1
4,405,151	-	vacB	b4179	0.19	-0.9
4,405,187	+	vacB	b4179	0.21	-0.9
4,405,245	+	vacB	b4179	0.23	-1.7
4,405,278	-	vacB	b4179	0.25	-3.5
4,405,313	+	vacB	b4179	0.26	-0.5
4,405,348	+	vacB	b4179	0.27	-2.2
4,405,358	-	vacB	b4179	0.28	-2.0
4,405,463	-	vacB	b4179	0.32	-2.2
4,405,463	-	vacB	b4179	0.32	-1.7
4,405,580	+	vacB	b4179	0.37	-0.9
4,405,590	+	vacB	b4179	0.37	-2.7
4,405,590	+	vacB	b4179	0.37	+0.1
4,405,590	+	vacB	b4179	0.37	+1.1
4,405,664	+	vacB	b4179	0.40	-0.5
4,405,697	-	vacB	b4179	0.42	-1.5
4,405,717	+	vacB	b4179	0.43	-1.9
4,405,736	+	vacB	b4179	0.43	+1.1
4,405,736	+	vacB	b4179	0.43	-0.9
4,405,844	+	vacB	b4179	0.48	-1.7
4,405,844	+	vacB	b4179	0.48	-1.9
4,405,863	+	vacB	b4179	0.49	+0.1
4,405,871	-	vacB	b4179	0.49	-2.4
4,405,906	+	vacB	b4179	0.50	-2.5
4,405,906	+	vacB	b4179	0.50	-0.5
4,405,992	+	vacB	b4179	0.54	-2.6
4,406,112	+	vacB	b4179	0.59	-1.7
4,406,130	-	vacB	b4179	0.60	-0.5
4,406,140	+	vacB	b4179	0.60	-1.7
4,406,177	-	vacB	b4179	0.61	-0.9
4,406,286	-	vacB	b4179	0.66	-1.2
4,406,286	-	vacB	b4179	0.66	-0.9
4,406,330	-	vacB	b4179	0.68	+0.1
4,406,455	+	vacB	b4179	0.73	-0.9
4,406,455	+	vacB	b4179	0.73	-1.5
4,406,465	+	vacB	b4179	0.73	-0.5
4,406,465	+	vacB	b4179	0.73	-1.9
4,406,471	-	vacB	b4179	0.73	+1.1
4,406,516	-	vacB	b4179	0.75	-0.5
4,406,518	+	vacB	b4179	0.75	-1.9
4,406,523	+	vacB	b4179	0.76	-0.7
4,406,526	-	vacB	b4179	0.76	-0.5
4,406,529	-	vacB	b4179	0.76	-0.5
4,406,564	+	vacB	b4179	0.77	-0.7
4,406,727	-	vacB	b4179	0.84	-2.1
4,406,727	-	vacB	b4179	0.84	-2.1
4,406,743	-	vacB	b4179	0.85	-1.2
4,406,812	+	vacB	b4179	0.87	-1.2
4,406,846	-	vacB	b4179	0.89	-2.2
4,406,846	-	vacB	b4179	0.89	-3.3
4,407,253	+				-0.0
4,407,286	-				-0.5
4,407,328	+				+0.0
4,407,335	+				-0.6
4,407,335	+				+0.1
4,407,336	-				+0.7
4,407,336	-				-1.2
4,407,336	-				-0.6
4,407,336	-				+0.4
4,407,345	-				-1.4
4,407,345	-				-1.3
4,407,346	-				+0.7
4,407,404	+	rlmB	b4180	0.14	+0.1
4,407,404	+	rlmB	b4180	0.14	+1.1
4,407,501	+	rlmB	b4180	0.28	-0.9
4,407,534	-	rlmB	b4180	0.32	-0.5
4,407,534	-				-1.2
4,407,704	-	rlmB	b4180	0.55	+1.5
4,407,772	-	rlmB	b4180	0.65	+0.5
4,407,772	-	rlmB	b4180	0.65	+0.5
4,407,776	+	rlmB	b4180	0.65	+0.4
4,407,776	+	rlmB	b4180	0.65	-0.2
4,407,833	+	rlmB	b4180	0.73	-2.2
4,407,842	-	rlmB	b4180	0.74	-2.5
4,407,849	-	rlmB	b4180	0.75	-1.5
4,407,874	+	rlmB	b4180	0.79	+2.1
4,407,876	+	rlmB	b4180	0.79	-0.8
4,407,876	+	rlmB	b4180	0.79	+0.5
4,407,882	-	rlmB	b4180	0.80	-0.9
4,407,889	+	rlmB	b4180	0.81	-0.6
4,407,891	-	rlmB	b4180	0.81	-0.0
4,407,898	+	rlmB	b4180	0.82	-2.1
4,407,906	+	rlmB	b4180	0.83	-0.5
4,407,907	+	rlmB	b4180	0.83	+0.1
4,407,924	-	rlmB	b4180	0.86	-0.5
4,407,941	+	rlmB	b4180	0.88	+0.1
4,407,942	-	rlmB	b4180	0.88	+2.4
4,407,942	-	rlmB	b4180	0.88	-0.2
4,407,951	+	rlmB	b4180	0.89	-1.5
4,407,953	-	rlmB	b4180	0.89	+0.7
4,407,967	+				-1.2
4,407,967	+				-0.8
4,407,977	+				-1.1
4,408,012	+				-0.5
4,408,012	+				+0.6
4,408,012	-				+0.3