Strain Fitness in Escherichia coli BW25113 around b3850

Experiment: methylglyoxal 0.008 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttrkH and hemG are separated by 11 nucleotideshemG and rrsA are separated by 377 nucleotides b3849: trkH - potassium transporter (NCBI), at 4,031,168 to 4,032,619 trkH b3850: hemG - protoporphyrin oxidase, flavoprotein (NCBI), at 4,032,631 to 4,033,176 hemG b3851: rrsA - 16S ribosomal RNA (NCBI), at 4,033,554 to 4,035,095 rrsA Position (kb) 4032 4033 4034Strain fitness (log2 ratio) -1 0 1 2 3at 4031.636 kb on - strand, within trkHat 4031.636 kb on - strand, within trkHat 4031.637 kb on + strand, within trkHat 4031.639 kb on + strand, within trkHat 4031.642 kb on + strand, within trkHat 4031.652 kb on - strand, within trkHat 4031.728 kb on + strand, within trkHat 4031.728 kb on + strand, within trkHat 4031.787 kb on + strand, within trkHat 4031.816 kb on - strand, within trkHat 4031.857 kb on - strand, within trkHat 4031.884 kb on - strand, within trkHat 4031.886 kb on - strand, within trkHat 4031.886 kb on - strand, within trkHat 4031.944 kb on + strand, within trkHat 4032.035 kb on + strand, within trkHat 4032.056 kb on + strand, within trkHat 4032.064 kb on - strand, within trkHat 4032.064 kb on - strand, within trkHat 4032.078 kb on + strand, within trkHat 4032.078 kb on + strand, within trkHat 4032.102 kb on - strand, within trkHat 4032.136 kb on + strand, within trkHat 4032.142 kb on - strand, within trkHat 4032.245 kb on - strand, within trkHat 4032.253 kb on + strand, within trkHat 4032.287 kb on + strand, within trkHat 4032.287 kb on + strand, within trkHat 4032.298 kb on - strand, within trkHat 4032.340 kb on - strand, within trkHat 4032.386 kb on - strand, within trkHat 4032.421 kb on + strand, within trkHat 4032.425 kb on - strand, within trkHat 4032.425 kb on - strand, within trkHat 4032.433 kb on + strand, within trkHat 4032.433 kb on + strand, within trkHat 4032.452 kb on + strand, within trkHat 4032.505 kb on - strandat 4032.505 kb on - strandat 4032.509 kb on + strandat 4032.521 kb on - strandat 4032.592 kb on - strandat 4032.604 kb on + strandat 4032.614 kb on + strandat 4032.622 kb on + strandat 4032.624 kb on - strandat 4032.960 kb on - strand, within hemG

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.008 vol%
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4,031,636 - trkH b3849 0.32 +1.7
4,031,636 - trkH b3849 0.32 +1.5
4,031,637 + trkH b3849 0.32 +1.8
4,031,639 + trkH b3849 0.32 +1.2
4,031,642 + trkH b3849 0.33 +1.9
4,031,652 - trkH b3849 0.33 +1.1
4,031,728 + trkH b3849 0.39 +1.8
4,031,728 + trkH b3849 0.39 +1.2
4,031,787 + trkH b3849 0.43 -1.1
4,031,816 - trkH b3849 0.45 +1.5
4,031,857 - trkH b3849 0.47 +1.1
4,031,884 - trkH b3849 0.49 -0.2
4,031,886 - trkH b3849 0.49 +1.1
4,031,886 - trkH b3849 0.49 +1.5
4,031,944 + trkH b3849 0.53 +0.9
4,032,035 + trkH b3849 0.60 -0.1
4,032,056 + trkH b3849 0.61 +1.2
4,032,064 - trkH b3849 0.62 +0.5
4,032,064 - trkH b3849 0.62 +1.7
4,032,078 + trkH b3849 0.63 +0.8
4,032,078 + trkH b3849 0.63 +1.7
4,032,102 - trkH b3849 0.64 +0.2
4,032,136 + trkH b3849 0.67 +0.8
4,032,142 - trkH b3849 0.67 +1.0
4,032,245 - trkH b3849 0.74 +2.9
4,032,253 + trkH b3849 0.75 +0.5
4,032,287 + trkH b3849 0.77 +1.2
4,032,287 + trkH b3849 0.77 +1.2
4,032,298 - trkH b3849 0.78 +2.8
4,032,340 - trkH b3849 0.81 +0.7
4,032,386 - trkH b3849 0.84 -0.0
4,032,421 + trkH b3849 0.86 +1.1
4,032,425 - trkH b3849 0.87 +0.2
4,032,425 - trkH b3849 0.87 +2.1
4,032,433 + trkH b3849 0.87 +0.9
4,032,433 + trkH b3849 0.87 +2.8
4,032,452 + trkH b3849 0.88 +0.6
4,032,505 - +1.2
4,032,505 - +1.5
4,032,509 + +0.2
4,032,521 - +1.2
4,032,592 - +1.8
4,032,604 + +1.7
4,032,614 + +1.1
4,032,622 + +1.2
4,032,624 - +0.6
4,032,960 - hemG b3850 0.60 +1.5

Or see this region's nucleotide sequence