Strain Fitness in Escherichia coli BW25113 around b3850
Experiment: methylglyoxal 0.008 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | methylglyoxal 0.008 vol% |
---|---|---|---|---|---|
remove | |||||
4,031,636 | - | trkH | b3849 | 0.32 | +1.7 |
4,031,636 | - | trkH | b3849 | 0.32 | +1.5 |
4,031,637 | + | trkH | b3849 | 0.32 | +1.8 |
4,031,639 | + | trkH | b3849 | 0.32 | +1.2 |
4,031,642 | + | trkH | b3849 | 0.33 | +1.9 |
4,031,652 | - | trkH | b3849 | 0.33 | +1.1 |
4,031,728 | + | trkH | b3849 | 0.39 | +1.8 |
4,031,728 | + | trkH | b3849 | 0.39 | +1.2 |
4,031,787 | + | trkH | b3849 | 0.43 | -1.1 |
4,031,816 | - | trkH | b3849 | 0.45 | +1.5 |
4,031,857 | - | trkH | b3849 | 0.47 | +1.1 |
4,031,884 | - | trkH | b3849 | 0.49 | -0.2 |
4,031,886 | - | trkH | b3849 | 0.49 | +1.1 |
4,031,886 | - | trkH | b3849 | 0.49 | +1.5 |
4,031,944 | + | trkH | b3849 | 0.53 | +0.9 |
4,032,035 | + | trkH | b3849 | 0.60 | -0.1 |
4,032,056 | + | trkH | b3849 | 0.61 | +1.2 |
4,032,064 | - | trkH | b3849 | 0.62 | +0.5 |
4,032,064 | - | trkH | b3849 | 0.62 | +1.7 |
4,032,078 | + | trkH | b3849 | 0.63 | +0.8 |
4,032,078 | + | trkH | b3849 | 0.63 | +1.7 |
4,032,102 | - | trkH | b3849 | 0.64 | +0.2 |
4,032,136 | + | trkH | b3849 | 0.67 | +0.8 |
4,032,142 | - | trkH | b3849 | 0.67 | +1.0 |
4,032,245 | - | trkH | b3849 | 0.74 | +2.9 |
4,032,253 | + | trkH | b3849 | 0.75 | +0.5 |
4,032,287 | + | trkH | b3849 | 0.77 | +1.2 |
4,032,287 | + | trkH | b3849 | 0.77 | +1.2 |
4,032,298 | - | trkH | b3849 | 0.78 | +2.8 |
4,032,340 | - | trkH | b3849 | 0.81 | +0.7 |
4,032,386 | - | trkH | b3849 | 0.84 | -0.0 |
4,032,421 | + | trkH | b3849 | 0.86 | +1.1 |
4,032,425 | - | trkH | b3849 | 0.87 | +0.2 |
4,032,425 | - | trkH | b3849 | 0.87 | +2.1 |
4,032,433 | + | trkH | b3849 | 0.87 | +0.9 |
4,032,433 | + | trkH | b3849 | 0.87 | +2.8 |
4,032,452 | + | trkH | b3849 | 0.88 | +0.6 |
4,032,505 | - | +1.2 | |||
4,032,505 | - | +1.5 | |||
4,032,509 | + | +0.2 | |||
4,032,521 | - | +1.2 | |||
4,032,592 | - | +1.8 | |||
4,032,604 | + | +1.7 | |||
4,032,614 | + | +1.1 | |||
4,032,622 | + | +1.2 | |||
4,032,624 | - | +0.6 | |||
4,032,960 | - | hemG | b3850 | 0.60 | +1.5 |
Or see this region's nucleotide sequence