Experiment: methylglyoxal 0.008 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt amiA and hemF are separated by 3 nucleotides hemF and yfeG are separated by 5 nucleotides yfeG and b2438 are separated by 45 nucleotides b2438 and eutL are separated by 12 nucleotides
b2435: amiA - N-acetylmuramoyl-l-alanine amidase I (NCBI), at 2,550,374 to 2,551,243
amiA
b2436: hemF - coproporphyrinogen III oxidase (NCBI), at 2,551,247 to 2,552,146
hemF
b2437: yfeG - predicted DNA-binding transcriptional regulator (NCBI), at 2,552,152 to 2,553,204
yfeG
b2438: b2438 - orf, hypothetical protein (VIMSS), at 2,553,250 to 2,553,750
b2438
b2439: eutL - predicted carboxysome structural protein with predicted role in ethanolamine utilization (NCBI), at 2,553,763 to 2,554,422
eutL
Position (kb)
2552
2553
2554 Strain fitness (log2 ratio)
-1
0
1
2 at 2551.197 kb on + strand at 2551.266 kb on + strand at 2551.295 kb on - strand at 2551.295 kb on - strand at 2551.355 kb on - strand, within hemF at 2551.444 kb on + strand, within hemF at 2551.444 kb on + strand, within hemF at 2551.531 kb on - strand, within hemF at 2551.643 kb on - strand, within hemF at 2551.645 kb on + strand, within hemF at 2551.678 kb on + strand, within hemF at 2551.678 kb on + strand, within hemF at 2551.837 kb on + strand, within hemF at 2551.837 kb on + strand, within hemF at 2552.065 kb on - strand at 2552.065 kb on - strand at 2552.087 kb on + strand at 2552.087 kb on + strand at 2552.141 kb on + strand at 2552.262 kb on - strand, within yfeG at 2552.262 kb on - strand, within yfeG at 2552.460 kb on + strand, within yfeG at 2552.460 kb on + strand, within yfeG at 2552.659 kb on - strand, within yfeG at 2552.659 kb on - strand, within yfeG at 2552.719 kb on - strand, within yfeG at 2552.790 kb on - strand, within yfeG at 2552.790 kb on - strand, within yfeG at 2552.812 kb on - strand, within yfeG at 2552.812 kb on - strand, within yfeG at 2552.881 kb on + strand, within yfeG at 2552.881 kb on + strand, within yfeG at 2552.917 kb on + strand, within yfeG at 2552.917 kb on + strand, within yfeG at 2552.932 kb on + strand, within yfeG at 2552.992 kb on - strand, within yfeG at 2553.227 kb on + strand at 2553.256 kb on - strand at 2553.292 kb on + strand at 2553.469 kb on - strand, within b2438 at 2553.469 kb on - strand, within b2438 at 2553.477 kb on + strand, within b2438 at 2553.478 kb on + strand, within b2438 at 2553.478 kb on + strand, within b2438 at 2553.478 kb on + strand, within b2438 at 2553.478 kb on + strand, within b2438 at 2553.513 kb on - strand, within b2438 at 2553.554 kb on - strand, within b2438 at 2553.598 kb on - strand, within b2438 at 2553.732 kb on + strand at 2553.922 kb on + strand, within eutL at 2554.133 kb on - strand, within eutL at 2554.133 kb on - strand, within eutL
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.008 vol% remove 2,551,197 + +0.3 2,551,266 + +0.9 2,551,295 - +0.9 2,551,295 - -0.7 2,551,355 - hemF b2436 0.12 -0.1 2,551,444 + hemF b2436 0.22 +0.9 2,551,444 + hemF b2436 0.22 +0.7 2,551,531 - hemF b2436 0.32 +0.0 2,551,643 - hemF b2436 0.44 -0.4 2,551,645 + hemF b2436 0.44 -0.9 2,551,678 + hemF b2436 0.48 -0.2 2,551,678 + hemF b2436 0.48 +0.4 2,551,837 + hemF b2436 0.66 -0.3 2,551,837 + hemF b2436 0.66 +1.4 2,552,065 - -0.2 2,552,065 - -0.1 2,552,087 + -0.4 2,552,087 + +0.1 2,552,141 + +0.3 2,552,262 - yfeG b2437 0.10 +0.5 2,552,262 - yfeG b2437 0.10 +0.8 2,552,460 + yfeG b2437 0.29 +0.7 2,552,460 + yfeG b2437 0.29 +0.6 2,552,659 - yfeG b2437 0.48 -0.4 2,552,659 - yfeG b2437 0.48 +0.9 2,552,719 - yfeG b2437 0.54 +1.3 2,552,790 - yfeG b2437 0.61 +2.5 2,552,790 - yfeG b2437 0.61 +0.2 2,552,812 - yfeG b2437 0.63 -0.1 2,552,812 - yfeG b2437 0.63 +1.1 2,552,881 + yfeG b2437 0.69 +2.2 2,552,881 + yfeG b2437 0.69 +0.9 2,552,917 + yfeG b2437 0.73 +0.1 2,552,917 + yfeG b2437 0.73 -0.0 2,552,932 + yfeG b2437 0.74 -1.1 2,552,992 - yfeG b2437 0.80 +0.8 2,553,227 + +1.1 2,553,256 - +0.6 2,553,292 + +1.2 2,553,469 - b2438 b2438 0.44 -0.2 2,553,469 - b2438 b2438 0.44 +0.9 2,553,477 + b2438 b2438 0.45 +0.5 2,553,478 + b2438 b2438 0.46 +1.9 2,553,478 + b2438 b2438 0.46 -0.9 2,553,478 + b2438 b2438 0.46 -0.1 2,553,478 + b2438 b2438 0.46 +0.1 2,553,513 - b2438 b2438 0.52 +0.5 2,553,554 - b2438 b2438 0.61 -0.2 2,553,598 - b2438 b2438 0.69 -1.1 2,553,732 + +0.8 2,553,922 + eutL b2439 0.24 -0.1 2,554,133 - eutL b2439 0.56 +2.5 2,554,133 - eutL b2439 0.56 +0.1
Or see this region's nucleotide sequence