Strain Fitness in Escherichia coli BW25113 around b1750
Experiment: methylglyoxal 0.008 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | methylglyoxal 0.008 vol% |
---|---|---|---|---|---|
remove | |||||
1,830,640 | - | xthA | b1749 | 0.23 | +0.4 |
1,830,904 | + | xthA | b1749 | 0.56 | +1.8 |
1,830,904 | + | xthA | b1749 | 0.56 | -0.2 |
1,830,979 | + | xthA | b1749 | 0.65 | -0.5 |
1,831,114 | + | xthA | b1749 | 0.82 | -0.9 |
1,831,114 | + | xthA | b1749 | 0.82 | -0.6 |
1,831,119 | + | xthA | b1749 | 0.83 | -1.0 |
1,831,119 | + | xthA | b1749 | 0.83 | +0.5 |
1,831,243 | - | -0.0 | |||
1,831,243 | - | -0.7 | |||
1,831,277 | - | +0.8 | |||
1,831,277 | - | +0.8 | |||
1,831,351 | + | -0.2 | |||
1,831,351 | + | +1.8 | |||
1,831,504 | - | ydjX | b1750 | 0.11 | +0.2 |
1,831,535 | - | ydjX | b1750 | 0.15 | -1.8 |
1,831,535 | - | ydjX | b1750 | 0.15 | +0.8 |
1,831,539 | - | ydjX | b1750 | 0.16 | +0.5 |
1,831,642 | + | ydjX | b1750 | 0.31 | +0.4 |
1,831,658 | + | ydjX | b1750 | 0.33 | +0.0 |
1,831,679 | - | ydjX | b1750 | 0.36 | -0.7 |
1,831,737 | - | ydjX | b1750 | 0.44 | +1.2 |
1,831,737 | - | ydjX | b1750 | 0.44 | +1.8 |
1,831,766 | + | ydjX | b1750 | 0.48 | +0.1 |
1,831,766 | + | ydjX | b1750 | 0.48 | -0.2 |
1,831,775 | + | ydjX | b1750 | 0.49 | -0.2 |
1,831,782 | + | ydjX | b1750 | 0.50 | +0.4 |
1,831,827 | - | ydjX | b1750 | 0.57 | +0.1 |
1,831,834 | + | ydjX | b1750 | 0.58 | +0.2 |
1,831,992 | - | ydjX | b1750 | 0.80 | -0.0 |
1,832,016 | + | ydjX | b1750 | 0.83 | -0.2 |
1,832,016 | + | ydjX | b1750 | 0.83 | +0.3 |
1,832,084 | - | -0.4 | |||
1,832,113 | - | -2.0 | |||
1,832,113 | - | -0.6 | |||
1,832,187 | + | -1.5 | |||
1,832,403 | + | ydjY | b1751 | 0.39 | -0.1 |
1,832,456 | + | ydjY | b1751 | 0.47 | -0.2 |
1,832,456 | + | ydjY | b1751 | 0.47 | +2.1 |
1,832,456 | + | ydjY | b1751 | 0.47 | +0.3 |
1,832,456 | + | ydjY | b1751 | 0.47 | +0.1 |
1,832,475 | - | ydjY | b1751 | 0.49 | +0.4 |
1,832,475 | - | ydjY | b1751 | 0.49 | +1.0 |
1,832,682 | + | ydjY | b1751 | 0.80 | +0.1 |
1,832,707 | - | ydjY | b1751 | 0.84 | +0.4 |
Or see this region's nucleotide sequence