Experiment: methylglyoxal 0.008 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybiO and glnQ are separated by 260 nucleotides glnQ and glnP overlap by 4 nucleotides glnP and glnH are separated by 138 nucleotides
b0808: ybiO - putative transport protein (VIMSS), at 842,478 to 844,703
ybiO
b0809: glnQ - glutamine ABC transporter ATP-binding protein (NCBI), at 844,964 to 845,686
glnQ
b0810: glnP - glutamine ABC transporter permease protein (NCBI), at 845,683 to 846,342
glnP
b0811: glnH - glutamine ABC transporter periplasmic protein (NCBI), at 846,481 to 847,227
glnH
Position (kb) 844
845
846 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 844.010 kb on + strand, within ybiO at 844.067 kb on - strand, within ybiO at 844.067 kb on - strand, within ybiO at 844.260 kb on + strand, within ybiO at 844.260 kb on + strand, within ybiO at 844.260 kb on + strand, within ybiO at 844.392 kb on - strand, within ybiO at 844.460 kb on - strand, within ybiO at 844.460 kb on - strand, within ybiO at 844.694 kb on - strand at 844.712 kb on - strand at 845.109 kb on + strand, within glnQ at 845.154 kb on + strand, within glnQ at 845.243 kb on + strand, within glnQ at 845.243 kb on + strand, within glnQ at 845.288 kb on + strand, within glnQ at 845.547 kb on - strand, within glnQ at 845.569 kb on + strand, within glnQ at 845.596 kb on - strand, within glnQ at 845.596 kb on - strand, within glnQ at 845.994 kb on + strand, within glnP at 845.994 kb on + strand, within glnP at 845.997 kb on - strand, within glnP at 845.998 kb on + strand, within glnP at 845.998 kb on + strand, within glnP at 846.069 kb on + strand, within glnP at 846.069 kb on + strand, within glnP at 846.069 kb on + strand, within glnP at 846.085 kb on + strand, within glnP at 846.154 kb on - strand, within glnP at 846.209 kb on - strand, within glnP at 846.326 kb on + strand at 846.326 kb on + strand at 846.420 kb on + strand at 846.420 kb on + strand at 846.434 kb on + strand at 846.434 kb on + strand at 846.502 kb on - strand at 846.583 kb on + strand, within glnH at 846.583 kb on + strand, within glnH at 846.604 kb on + strand, within glnH at 846.658 kb on - strand, within glnH
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.008 vol% remove 844,010 + ybiO b0808 0.69 +0.3 844,067 - ybiO b0808 0.71 +0.9 844,067 - ybiO b0808 0.71 +2.2 844,260 + ybiO b0808 0.80 +0.0 844,260 + ybiO b0808 0.80 -1.4 844,260 + ybiO b0808 0.80 +0.0 844,392 - ybiO b0808 0.86 +0.3 844,460 - ybiO b0808 0.89 -0.3 844,460 - ybiO b0808 0.89 +0.0 844,694 - -0.7 844,712 - -0.5 845,109 + glnQ b0809 0.20 +1.2 845,154 + glnQ b0809 0.26 +1.2 845,243 + glnQ b0809 0.39 +0.5 845,243 + glnQ b0809 0.39 -0.8 845,288 + glnQ b0809 0.45 +0.3 845,547 - glnQ b0809 0.81 +6.1 845,569 + glnQ b0809 0.84 -0.3 845,596 - glnQ b0809 0.87 +0.6 845,596 - glnQ b0809 0.87 +1.9 845,994 + glnP b0810 0.47 -0.9 845,994 + glnP b0810 0.47 +0.9 845,997 - glnP b0810 0.48 +1.9 845,998 + glnP b0810 0.48 +1.6 845,998 + glnP b0810 0.48 +0.2 846,069 + glnP b0810 0.58 +0.4 846,069 + glnP b0810 0.58 +0.9 846,069 + glnP b0810 0.58 -0.5 846,085 + glnP b0810 0.61 -1.4 846,154 - glnP b0810 0.71 -0.3 846,209 - glnP b0810 0.80 +0.6 846,326 + +0.1 846,326 + -1.8 846,420 + +0.1 846,420 + +1.2 846,434 + +1.9 846,434 + -0.7 846,502 - +0.2 846,583 + glnH b0811 0.14 +2.5 846,583 + glnH b0811 0.14 -0.1 846,604 + glnH b0811 0.16 -0.6 846,658 - glnH b0811 0.24 +0.2
Or see this region's nucleotide sequence