Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_4987 and PfGW456L13_4988 are separated by 122 nucleotides PfGW456L13_4988 and PfGW456L13_4989 are separated by 40 nucleotides PfGW456L13_4989 and PfGW456L13_4990 overlap by 27 nucleotides
PfGW456L13_4987 - Glutathione peroxidase family protein, at 5,566,109 to 5,566,591
_4987
PfGW456L13_4988 - FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8), at 5,566,714 to 5,567,199
_4988
PfGW456L13_4989 - hypothetical protein, at 5,567,240 to 5,567,560
_4989
PfGW456L13_4990 - Phosphate acetyltransferase (EC 2.3.1.8), at 5,567,534 to 5,569,654
_4990
Position (kb) 5567
5568 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5566.272 kb on + strand, within PfGW456L13_4987 at 5566.272 kb on + strand, within PfGW456L13_4987 at 5566.272 kb on + strand, within PfGW456L13_4987 at 5566.273 kb on - strand, within PfGW456L13_4987 at 5566.335 kb on + strand, within PfGW456L13_4987 at 5566.335 kb on + strand, within PfGW456L13_4987 at 5566.335 kb on + strand, within PfGW456L13_4987 at 5566.336 kb on - strand, within PfGW456L13_4987 at 5566.336 kb on - strand, within PfGW456L13_4987 at 5566.336 kb on - strand, within PfGW456L13_4987 at 5566.447 kb on - strand, within PfGW456L13_4987 at 5566.467 kb on + strand, within PfGW456L13_4987 at 5566.468 kb on - strand, within PfGW456L13_4987 at 5566.541 kb on + strand, within PfGW456L13_4987 at 5566.541 kb on + strand, within PfGW456L13_4987 at 5566.541 kb on + strand, within PfGW456L13_4987 at 5566.542 kb on - strand, within PfGW456L13_4987 at 5566.542 kb on - strand, within PfGW456L13_4987 at 5566.542 kb on - strand, within PfGW456L13_4987 at 5566.570 kb on + strand at 5566.597 kb on - strand at 5566.693 kb on + strand at 5566.693 kb on + strand at 5566.694 kb on - strand at 5566.694 kb on - strand at 5566.988 kb on + strand, within PfGW456L13_4988 at 5566.989 kb on - strand, within PfGW456L13_4988 at 5566.998 kb on - strand, within PfGW456L13_4988 at 5567.099 kb on + strand, within PfGW456L13_4988 at 5567.100 kb on - strand, within PfGW456L13_4988 at 5567.100 kb on - strand, within PfGW456L13_4988 at 5567.160 kb on + strand at 5567.160 kb on + strand at 5567.160 kb on + strand at 5567.160 kb on + strand at 5567.161 kb on - strand at 5567.161 kb on - strand at 5567.162 kb on + strand at 5567.162 kb on + strand at 5567.162 kb on + strand at 5567.162 kb on + strand at 5567.163 kb on - strand at 5567.163 kb on - strand at 5567.163 kb on - strand at 5567.163 kb on - strand at 5567.163 kb on - strand at 5567.163 kb on - strand at 5567.182 kb on - strand at 5567.182 kb on - strand at 5567.431 kb on - strand, within PfGW456L13_4989 at 5567.474 kb on - strand, within PfGW456L13_4989 at 5567.514 kb on + strand, within PfGW456L13_4989 at 5567.514 kb on + strand, within PfGW456L13_4989 at 5567.514 kb on + strand, within PfGW456L13_4989 at 5567.514 kb on + strand, within PfGW456L13_4989 at 5567.514 kb on + strand, within PfGW456L13_4989 at 5567.515 kb on - strand, within PfGW456L13_4989 at 5567.515 kb on - strand, within PfGW456L13_4989 at 5567.515 kb on - strand, within PfGW456L13_4989 at 5567.516 kb on + strand, within PfGW456L13_4989 at 5567.516 kb on + strand, within PfGW456L13_4989 at 5567.516 kb on + strand, within PfGW456L13_4989 at 5567.516 kb on + strand, within PfGW456L13_4989 at 5567.516 kb on + strand, within PfGW456L13_4989 at 5567.516 kb on + strand, within PfGW456L13_4989 at 5567.516 kb on + strand, within PfGW456L13_4989 at 5567.516 kb on + strand, within PfGW456L13_4989 at 5567.516 kb on + strand, within PfGW456L13_4989 at 5567.516 kb on + strand, within PfGW456L13_4989 at 5567.516 kb on + strand, within PfGW456L13_4989 at 5567.516 kb on + strand, within PfGW456L13_4989 at 5567.516 kb on + strand, within PfGW456L13_4989 at 5567.516 kb on + strand, within PfGW456L13_4989 at 5567.516 kb on + strand, within PfGW456L13_4989 at 5567.516 kb on + strand, within PfGW456L13_4989 at 5567.516 kb on + strand, within PfGW456L13_4989 at 5567.516 kb on + strand, within PfGW456L13_4989 at 5567.516 kb on + strand, within PfGW456L13_4989 at 5567.516 kb on + strand, within PfGW456L13_4989 at 5567.516 kb on + strand, within PfGW456L13_4989 at 5567.516 kb on + strand, within PfGW456L13_4989 at 5567.516 kb on + strand, within PfGW456L13_4989 at 5567.516 kb on + strand, within PfGW456L13_4989 at 5567.516 kb on + strand, within PfGW456L13_4989 at 5567.516 kb on + strand, within PfGW456L13_4989 at 5567.516 kb on + strand, within PfGW456L13_4989 at 5567.516 kb on + strand, within PfGW456L13_4989 at 5567.517 kb on - strand, within PfGW456L13_4989 at 5567.517 kb on - strand, within PfGW456L13_4989 at 5567.517 kb on - strand, within PfGW456L13_4989 at 5567.517 kb on - strand at 5567.517 kb on - strand at 5567.517 kb on - strand, within PfGW456L13_4989 at 5567.517 kb on - strand, within PfGW456L13_4989 at 5567.517 kb on - strand, within PfGW456L13_4989 at 5567.517 kb on - strand, within PfGW456L13_4989 at 5567.517 kb on - strand, within PfGW456L13_4989 at 5567.517 kb on - strand, within PfGW456L13_4989 at 5567.517 kb on - strand, within PfGW456L13_4989 at 5567.517 kb on - strand, within PfGW456L13_4989 at 5567.517 kb on - strand, within PfGW456L13_4989 at 5567.517 kb on - strand, within PfGW456L13_4989 at 5567.517 kb on - strand, within PfGW456L13_4989 at 5567.517 kb on - strand, within PfGW456L13_4989 at 5567.517 kb on - strand, within PfGW456L13_4989 at 5567.517 kb on - strand, within PfGW456L13_4989 at 5567.517 kb on - strand, within PfGW456L13_4989 at 5567.517 kb on - strand, within PfGW456L13_4989 at 5567.517 kb on - strand, within PfGW456L13_4989 at 5567.517 kb on - strand, within PfGW456L13_4989 at 5567.517 kb on - strand, within PfGW456L13_4989 at 5567.517 kb on - strand, within PfGW456L13_4989 at 5567.832 kb on - strand, within PfGW456L13_4990 at 5567.900 kb on + strand, within PfGW456L13_4990 at 5567.900 kb on + strand, within PfGW456L13_4990 at 5567.901 kb on - strand, within PfGW456L13_4990 at 5568.298 kb on + strand, within PfGW456L13_4990 at 5568.299 kb on - strand, within PfGW456L13_4990 at 5568.299 kb on - strand, within PfGW456L13_4990 at 5568.299 kb on - strand, within PfGW456L13_4990 at 5568.502 kb on + strand, within PfGW456L13_4990 at 5568.513 kb on - strand, within PfGW456L13_4990
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 5,566,272 + PfGW456L13_4987 0.34 +0.2 5,566,272 + PfGW456L13_4987 0.34 -1.2 5,566,272 + PfGW456L13_4987 0.34 +0.6 5,566,273 - PfGW456L13_4987 0.34 -0.7 5,566,335 + PfGW456L13_4987 0.47 -0.2 5,566,335 + PfGW456L13_4987 0.47 -0.2 5,566,335 + PfGW456L13_4987 0.47 +0.2 5,566,336 - PfGW456L13_4987 0.47 +0.1 5,566,336 - PfGW456L13_4987 0.47 -0.3 5,566,336 - PfGW456L13_4987 0.47 +1.3 5,566,447 - PfGW456L13_4987 0.70 -0.2 5,566,467 + PfGW456L13_4987 0.74 -0.1 5,566,468 - PfGW456L13_4987 0.74 -0.5 5,566,541 + PfGW456L13_4987 0.89 +1.2 5,566,541 + PfGW456L13_4987 0.89 +0.1 5,566,541 + PfGW456L13_4987 0.89 +1.2 5,566,542 - PfGW456L13_4987 0.90 -0.6 5,566,542 - PfGW456L13_4987 0.90 +0.8 5,566,542 - PfGW456L13_4987 0.90 -1.1 5,566,570 + -2.1 5,566,597 - +2.7 5,566,693 + +0.9 5,566,693 + +0.3 5,566,694 - +0.6 5,566,694 - +0.2 5,566,988 + PfGW456L13_4988 0.56 +1.1 5,566,989 - PfGW456L13_4988 0.57 +1.1 5,566,998 - PfGW456L13_4988 0.58 +0.9 5,567,099 + PfGW456L13_4988 0.79 -1.5 5,567,100 - PfGW456L13_4988 0.79 +0.0 5,567,100 - PfGW456L13_4988 0.79 +0.5 5,567,160 + +0.1 5,567,160 + +0.4 5,567,160 + -0.8 5,567,160 + +0.1 5,567,161 - +0.7 5,567,161 - -0.5 5,567,162 + +0.3 5,567,162 + +0.5 5,567,162 + +1.3 5,567,162 + -0.4 5,567,163 - -0.2 5,567,163 - -1.3 5,567,163 - +1.8 5,567,163 - -1.5 5,567,163 - -0.1 5,567,163 - -1.7 5,567,182 - -0.3 5,567,182 - +0.9 5,567,431 - PfGW456L13_4989 0.60 +0.3 5,567,474 - PfGW456L13_4989 0.73 -0.6 5,567,514 + PfGW456L13_4989 0.85 +1.5 5,567,514 + PfGW456L13_4989 0.85 +0.8 5,567,514 + PfGW456L13_4989 0.85 -0.1 5,567,514 + PfGW456L13_4989 0.85 -0.7 5,567,514 + PfGW456L13_4989 0.85 +0.6 5,567,515 - PfGW456L13_4989 0.86 -0.3 5,567,515 - PfGW456L13_4989 0.86 -0.4 5,567,515 - PfGW456L13_4989 0.86 +0.3 5,567,516 + PfGW456L13_4989 0.86 +0.6 5,567,516 + PfGW456L13_4989 0.86 -0.2 5,567,516 + PfGW456L13_4989 0.86 +1.3 5,567,516 + PfGW456L13_4989 0.86 -1.1 5,567,516 + PfGW456L13_4989 0.86 -0.5 5,567,516 + PfGW456L13_4989 0.86 +0.0 5,567,516 + PfGW456L13_4989 0.86 +1.8 5,567,516 + PfGW456L13_4989 0.86 -0.4 5,567,516 + PfGW456L13_4989 0.86 -0.2 5,567,516 + PfGW456L13_4989 0.86 -0.2 5,567,516 + PfGW456L13_4989 0.86 -0.3 5,567,516 + PfGW456L13_4989 0.86 +0.7 5,567,516 + PfGW456L13_4989 0.86 +0.5 5,567,516 + PfGW456L13_4989 0.86 +0.6 5,567,516 + PfGW456L13_4989 0.86 +0.9 5,567,516 + PfGW456L13_4989 0.86 -2.9 5,567,516 + PfGW456L13_4989 0.86 -0.1 5,567,516 + PfGW456L13_4989 0.86 -0.1 5,567,516 + PfGW456L13_4989 0.86 -0.1 5,567,516 + PfGW456L13_4989 0.86 -0.3 5,567,516 + PfGW456L13_4989 0.86 +0.5 5,567,516 + PfGW456L13_4989 0.86 +0.5 5,567,516 + PfGW456L13_4989 0.86 +0.7 5,567,516 + PfGW456L13_4989 0.86 +0.1 5,567,516 + PfGW456L13_4989 0.86 +1.2 5,567,516 + PfGW456L13_4989 0.86 -0.2 5,567,516 + PfGW456L13_4989 0.86 -0.0 5,567,516 + PfGW456L13_4989 0.86 -0.3 5,567,517 - PfGW456L13_4989 0.86 -1.0 5,567,517 - PfGW456L13_4989 0.86 -0.3 5,567,517 - PfGW456L13_4989 0.86 +1.3 5,567,517 - -0.1 5,567,517 - -0.1 5,567,517 - PfGW456L13_4989 0.86 -0.5 5,567,517 - PfGW456L13_4989 0.86 +1.3 5,567,517 - PfGW456L13_4989 0.86 +1.1 5,567,517 - PfGW456L13_4989 0.86 -0.5 5,567,517 - PfGW456L13_4989 0.86 -0.1 5,567,517 - PfGW456L13_4989 0.86 -0.4 5,567,517 - PfGW456L13_4989 0.86 -0.4 5,567,517 - PfGW456L13_4989 0.86 +0.7 5,567,517 - PfGW456L13_4989 0.86 +0.3 5,567,517 - PfGW456L13_4989 0.86 -1.1 5,567,517 - PfGW456L13_4989 0.86 -0.7 5,567,517 - PfGW456L13_4989 0.86 -0.1 5,567,517 - PfGW456L13_4989 0.86 +0.5 5,567,517 - PfGW456L13_4989 0.86 +0.0 5,567,517 - PfGW456L13_4989 0.86 +0.7 5,567,517 - PfGW456L13_4989 0.86 +0.2 5,567,517 - PfGW456L13_4989 0.86 +0.4 5,567,517 - PfGW456L13_4989 0.86 +1.1 5,567,517 - PfGW456L13_4989 0.86 +0.5 5,567,517 - PfGW456L13_4989 0.86 +0.7 5,567,832 - PfGW456L13_4990 0.14 +0.1 5,567,900 + PfGW456L13_4990 0.17 -0.5 5,567,900 + PfGW456L13_4990 0.17 +0.4 5,567,901 - PfGW456L13_4990 0.17 +0.0 5,568,298 + PfGW456L13_4990 0.36 -0.2 5,568,299 - PfGW456L13_4990 0.36 -0.8 5,568,299 - PfGW456L13_4990 0.36 +0.0 5,568,299 - PfGW456L13_4990 0.36 -0.8 5,568,502 + PfGW456L13_4990 0.46 +1.3 5,568,513 - PfGW456L13_4990 0.46 -0.3
Or see this region's nucleotide sequence