Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_492 and PfGW456L13_493 are separated by 125 nucleotides PfGW456L13_493 and PfGW456L13_494 are separated by 136 nucleotides
PfGW456L13_492 - Sensory box/GGDEF family protein, at 563,024 to 564,013
_492
PfGW456L13_493 - response regulator, at 564,139 to 565,353
_493
PfGW456L13_494 - 5-aminovalerate aminotransferase (EC 2.6.1.48) / Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19), at 565,490 to 566,767
_494
Position (kb) 564
565
566 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 563.213 kb on + strand, within PfGW456L13_492 at 563.214 kb on - strand, within PfGW456L13_492 at 563.214 kb on - strand, within PfGW456L13_492 at 563.214 kb on - strand, within PfGW456L13_492 at 563.229 kb on - strand, within PfGW456L13_492 at 563.229 kb on - strand, within PfGW456L13_492 at 563.259 kb on + strand, within PfGW456L13_492 at 563.259 kb on + strand, within PfGW456L13_492 at 563.259 kb on + strand, within PfGW456L13_492 at 563.260 kb on - strand, within PfGW456L13_492 at 563.260 kb on - strand, within PfGW456L13_492 at 563.260 kb on - strand, within PfGW456L13_492 at 563.260 kb on - strand, within PfGW456L13_492 at 563.261 kb on - strand, within PfGW456L13_492 at 563.315 kb on + strand, within PfGW456L13_492 at 563.315 kb on + strand, within PfGW456L13_492 at 563.315 kb on + strand, within PfGW456L13_492 at 563.315 kb on + strand, within PfGW456L13_492 at 563.316 kb on - strand, within PfGW456L13_492 at 563.316 kb on - strand, within PfGW456L13_492 at 563.423 kb on + strand, within PfGW456L13_492 at 563.423 kb on + strand, within PfGW456L13_492 at 563.423 kb on + strand, within PfGW456L13_492 at 563.423 kb on + strand, within PfGW456L13_492 at 563.424 kb on - strand, within PfGW456L13_492 at 563.424 kb on - strand, within PfGW456L13_492 at 563.424 kb on - strand, within PfGW456L13_492 at 563.424 kb on - strand, within PfGW456L13_492 at 563.424 kb on - strand, within PfGW456L13_492 at 563.647 kb on + strand, within PfGW456L13_492 at 563.648 kb on - strand, within PfGW456L13_492 at 563.672 kb on + strand, within PfGW456L13_492 at 563.672 kb on + strand, within PfGW456L13_492 at 563.672 kb on + strand, within PfGW456L13_492 at 563.672 kb on + strand, within PfGW456L13_492 at 563.672 kb on + strand, within PfGW456L13_492 at 563.672 kb on + strand, within PfGW456L13_492 at 563.672 kb on + strand, within PfGW456L13_492 at 563.672 kb on + strand, within PfGW456L13_492 at 563.672 kb on + strand, within PfGW456L13_492 at 563.672 kb on + strand, within PfGW456L13_492 at 563.673 kb on - strand, within PfGW456L13_492 at 563.673 kb on - strand, within PfGW456L13_492 at 563.673 kb on - strand, within PfGW456L13_492 at 563.673 kb on - strand, within PfGW456L13_492 at 563.673 kb on - strand, within PfGW456L13_492 at 563.673 kb on - strand, within PfGW456L13_492 at 563.673 kb on - strand, within PfGW456L13_492 at 563.673 kb on - strand, within PfGW456L13_492 at 563.673 kb on - strand, within PfGW456L13_492 at 563.673 kb on - strand, within PfGW456L13_492 at 563.673 kb on - strand, within PfGW456L13_492 at 563.673 kb on - strand, within PfGW456L13_492 at 563.673 kb on - strand, within PfGW456L13_492 at 563.673 kb on - strand, within PfGW456L13_492 at 563.673 kb on - strand, within PfGW456L13_492 at 563.969 kb on + strand at 563.969 kb on + strand at 563.969 kb on + strand at 563.969 kb on + strand at 563.969 kb on + strand at 563.969 kb on + strand at 563.969 kb on + strand at 563.969 kb on + strand at 563.970 kb on - strand at 563.970 kb on - strand at 563.970 kb on - strand at 563.970 kb on - strand at 563.970 kb on - strand at 563.970 kb on - strand at 563.970 kb on - strand at 563.970 kb on - strand at 563.970 kb on - strand at 563.970 kb on - strand at 563.970 kb on - strand at 563.970 kb on - strand at 564.065 kb on - strand at 564.065 kb on - strand at 564.085 kb on + strand at 564.085 kb on + strand at 564.085 kb on + strand at 564.085 kb on + strand at 564.085 kb on + strand at 564.085 kb on + strand at 564.085 kb on + strand at 564.085 kb on + strand at 564.085 kb on + strand at 564.085 kb on + strand at 564.085 kb on + strand at 564.085 kb on + strand at 564.085 kb on + strand at 564.085 kb on + strand at 564.085 kb on + strand at 564.085 kb on + strand at 564.085 kb on + strand at 564.085 kb on + strand at 564.086 kb on - strand at 564.086 kb on - strand at 564.086 kb on - strand at 564.086 kb on - strand at 564.086 kb on - strand at 564.086 kb on - strand at 564.086 kb on - strand at 564.086 kb on - strand at 564.086 kb on - strand at 564.086 kb on - strand at 564.086 kb on - strand at 564.086 kb on - strand at 564.086 kb on - strand at 564.136 kb on + strand at 564.136 kb on + strand at 564.136 kb on + strand at 564.136 kb on + strand at 564.136 kb on + strand at 564.137 kb on - strand at 564.137 kb on - strand at 564.137 kb on - strand at 564.137 kb on - strand at 564.137 kb on - strand at 564.140 kb on + strand at 564.140 kb on + strand at 564.140 kb on + strand at 564.140 kb on + strand at 564.140 kb on + strand at 564.141 kb on - strand at 564.141 kb on - strand at 564.141 kb on - strand at 564.141 kb on - strand at 564.141 kb on - strand at 564.141 kb on - strand at 564.141 kb on - strand at 564.141 kb on - strand at 564.141 kb on - strand at 564.305 kb on + strand, within PfGW456L13_493 at 564.371 kb on + strand, within PfGW456L13_493 at 564.372 kb on - strand, within PfGW456L13_493 at 564.504 kb on - strand, within PfGW456L13_493 at 564.593 kb on + strand, within PfGW456L13_493 at 564.593 kb on + strand, within PfGW456L13_493 at 564.594 kb on - strand, within PfGW456L13_493 at 565.002 kb on + strand, within PfGW456L13_493 at 565.002 kb on + strand, within PfGW456L13_493 at 565.002 kb on + strand, within PfGW456L13_493 at 565.002 kb on + strand, within PfGW456L13_493 at 565.022 kb on + strand, within PfGW456L13_493 at 565.023 kb on - strand, within PfGW456L13_493 at 565.141 kb on - strand, within PfGW456L13_493 at 565.188 kb on - strand, within PfGW456L13_493 at 565.258 kb on + strand at 565.258 kb on + strand at 565.258 kb on + strand at 565.258 kb on + strand at 565.259 kb on - strand at 565.259 kb on - strand at 565.259 kb on - strand at 565.259 kb on - strand at 565.353 kb on + strand at 565.353 kb on + strand at 565.353 kb on + strand at 565.353 kb on + strand at 565.353 kb on + strand at 565.354 kb on - strand at 565.354 kb on - strand at 565.354 kb on - strand at 565.411 kb on + strand at 565.587 kb on + strand at 565.740 kb on + strand, within PfGW456L13_494 at 565.741 kb on - strand, within PfGW456L13_494 at 565.872 kb on + strand, within PfGW456L13_494 at 565.872 kb on + strand, within PfGW456L13_494 at 565.873 kb on - strand, within PfGW456L13_494 at 565.873 kb on - strand, within PfGW456L13_494 at 565.873 kb on - strand, within PfGW456L13_494 at 565.911 kb on + strand, within PfGW456L13_494 at 565.911 kb on + strand, within PfGW456L13_494 at 565.911 kb on + strand, within PfGW456L13_494 at 565.911 kb on + strand, within PfGW456L13_494 at 565.912 kb on - strand, within PfGW456L13_494 at 565.912 kb on - strand, within PfGW456L13_494 at 565.912 kb on - strand, within PfGW456L13_494 at 565.912 kb on - strand, within PfGW456L13_494 at 566.042 kb on + strand, within PfGW456L13_494 at 566.042 kb on + strand, within PfGW456L13_494 at 566.043 kb on - strand, within PfGW456L13_494 at 566.043 kb on - strand, within PfGW456L13_494 at 566.043 kb on - strand, within PfGW456L13_494 at 566.121 kb on + strand, within PfGW456L13_494 at 566.121 kb on + strand, within PfGW456L13_494 at 566.121 kb on + strand, within PfGW456L13_494 at 566.121 kb on + strand, within PfGW456L13_494 at 566.121 kb on + strand, within PfGW456L13_494 at 566.121 kb on + strand, within PfGW456L13_494 at 566.121 kb on + strand, within PfGW456L13_494 at 566.121 kb on + strand, within PfGW456L13_494 at 566.121 kb on + strand, within PfGW456L13_494 at 566.122 kb on - strand, within PfGW456L13_494 at 566.122 kb on - strand, within PfGW456L13_494 at 566.122 kb on - strand, within PfGW456L13_494 at 566.122 kb on - strand, within PfGW456L13_494 at 566.122 kb on - strand, within PfGW456L13_494 at 566.122 kb on - strand, within PfGW456L13_494 at 566.122 kb on - strand, within PfGW456L13_494 at 566.122 kb on - strand, within PfGW456L13_494 at 566.254 kb on - strand, within PfGW456L13_494 at 566.255 kb on + strand, within PfGW456L13_494 at 566.255 kb on + strand, within PfGW456L13_494 at 566.255 kb on + strand, within PfGW456L13_494 at 566.302 kb on - strand, within PfGW456L13_494
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 563,213 + PfGW456L13_492 0.19 -0.6 563,214 - PfGW456L13_492 0.19 +0.5 563,214 - PfGW456L13_492 0.19 -0.7 563,214 - PfGW456L13_492 0.19 -0.4 563,229 - PfGW456L13_492 0.21 +0.7 563,229 - PfGW456L13_492 0.21 -0.0 563,259 + PfGW456L13_492 0.24 +0.1 563,259 + PfGW456L13_492 0.24 +0.1 563,259 + PfGW456L13_492 0.24 +0.9 563,260 - PfGW456L13_492 0.24 +1.0 563,260 - PfGW456L13_492 0.24 +0.4 563,260 - PfGW456L13_492 0.24 +0.5 563,260 - PfGW456L13_492 0.24 -0.3 563,261 - PfGW456L13_492 0.24 -2.0 563,315 + PfGW456L13_492 0.29 +0.4 563,315 + PfGW456L13_492 0.29 -0.3 563,315 + PfGW456L13_492 0.29 +0.2 563,315 + PfGW456L13_492 0.29 +0.2 563,316 - PfGW456L13_492 0.29 +0.2 563,316 - PfGW456L13_492 0.29 +0.3 563,423 + PfGW456L13_492 0.40 -0.3 563,423 + PfGW456L13_492 0.40 +1.8 563,423 + PfGW456L13_492 0.40 -0.9 563,423 + PfGW456L13_492 0.40 -1.1 563,424 - PfGW456L13_492 0.40 +1.0 563,424 - PfGW456L13_492 0.40 -1.5 563,424 - PfGW456L13_492 0.40 -2.0 563,424 - PfGW456L13_492 0.40 -0.2 563,424 - PfGW456L13_492 0.40 +0.6 563,647 + PfGW456L13_492 0.63 -0.8 563,648 - PfGW456L13_492 0.63 -1.4 563,672 + PfGW456L13_492 0.65 +0.4 563,672 + PfGW456L13_492 0.65 +0.3 563,672 + PfGW456L13_492 0.65 +1.1 563,672 + PfGW456L13_492 0.65 -0.4 563,672 + PfGW456L13_492 0.65 +0.8 563,672 + PfGW456L13_492 0.65 +0.3 563,672 + PfGW456L13_492 0.65 +0.1 563,672 + PfGW456L13_492 0.65 -0.1 563,672 + PfGW456L13_492 0.65 -1.0 563,672 + PfGW456L13_492 0.65 -0.0 563,673 - PfGW456L13_492 0.66 +0.2 563,673 - PfGW456L13_492 0.66 +0.7 563,673 - PfGW456L13_492 0.66 +1.0 563,673 - PfGW456L13_492 0.66 -0.7 563,673 - PfGW456L13_492 0.66 +0.3 563,673 - PfGW456L13_492 0.66 -0.6 563,673 - PfGW456L13_492 0.66 +0.7 563,673 - PfGW456L13_492 0.66 +0.4 563,673 - PfGW456L13_492 0.66 +1.4 563,673 - PfGW456L13_492 0.66 -0.4 563,673 - PfGW456L13_492 0.66 -0.4 563,673 - PfGW456L13_492 0.66 +0.2 563,673 - PfGW456L13_492 0.66 +1.0 563,673 - PfGW456L13_492 0.66 -1.0 563,673 - PfGW456L13_492 0.66 -0.8 563,969 + +0.1 563,969 + -0.1 563,969 + +1.1 563,969 + -0.2 563,969 + +0.2 563,969 + -0.5 563,969 + -0.0 563,969 + -0.2 563,970 - +1.0 563,970 - +0.9 563,970 - -0.8 563,970 - +1.2 563,970 - +0.1 563,970 - +0.2 563,970 - +1.8 563,970 - -0.8 563,970 - -0.4 563,970 - +0.3 563,970 - -0.9 563,970 - -0.5 564,065 - +0.4 564,065 - -0.2 564,085 + +0.2 564,085 + -0.9 564,085 + +0.7 564,085 + -0.2 564,085 + -0.2 564,085 + +0.8 564,085 + +0.6 564,085 + -0.3 564,085 + +0.5 564,085 + -1.0 564,085 + +0.1 564,085 + +0.9 564,085 + -1.7 564,085 + +0.0 564,085 + +0.6 564,085 + +1.2 564,085 + +1.2 564,085 + -3.1 564,086 - +1.2 564,086 - -0.4 564,086 - +1.0 564,086 - -0.5 564,086 - +0.6 564,086 - +1.1 564,086 - +0.0 564,086 - -1.2 564,086 - -3.6 564,086 - -1.4 564,086 - +0.6 564,086 - +0.3 564,086 - -0.1 564,136 + -1.4 564,136 + +1.6 564,136 + +0.0 564,136 + -1.3 564,136 + +0.7 564,137 - +1.2 564,137 - -0.3 564,137 - +0.8 564,137 - +0.2 564,137 - +0.7 564,140 + -0.1 564,140 + -0.0 564,140 + -1.0 564,140 + +0.8 564,140 + +0.2 564,141 - +0.2 564,141 - +1.0 564,141 - -0.8 564,141 - -0.9 564,141 - +0.6 564,141 - -0.4 564,141 - -0.5 564,141 - -0.7 564,141 - +2.7 564,305 + PfGW456L13_493 0.14 -1.9 564,371 + PfGW456L13_493 0.19 +0.4 564,372 - PfGW456L13_493 0.19 -0.6 564,504 - PfGW456L13_493 0.30 -0.4 564,593 + PfGW456L13_493 0.37 -0.2 564,593 + PfGW456L13_493 0.37 +0.2 564,594 - PfGW456L13_493 0.37 -0.1 565,002 + PfGW456L13_493 0.71 +1.0 565,002 + PfGW456L13_493 0.71 -0.3 565,002 + PfGW456L13_493 0.71 +0.5 565,002 + PfGW456L13_493 0.71 +1.9 565,022 + PfGW456L13_493 0.73 +0.8 565,023 - PfGW456L13_493 0.73 -1.4 565,141 - PfGW456L13_493 0.82 +0.7 565,188 - PfGW456L13_493 0.86 -0.0 565,258 + +0.6 565,258 + -0.9 565,258 + +0.2 565,258 + -0.3 565,259 - +1.0 565,259 - -0.7 565,259 - +1.2 565,259 - +0.9 565,353 + -0.2 565,353 + -0.0 565,353 + +1.1 565,353 + -1.8 565,353 + -0.1 565,354 - +0.9 565,354 - +0.0 565,354 - -0.4 565,411 + -0.8 565,587 + -1.2 565,740 + PfGW456L13_494 0.20 -0.1 565,741 - PfGW456L13_494 0.20 -1.6 565,872 + PfGW456L13_494 0.30 -0.2 565,872 + PfGW456L13_494 0.30 -2.4 565,873 - PfGW456L13_494 0.30 +0.9 565,873 - PfGW456L13_494 0.30 -0.9 565,873 - PfGW456L13_494 0.30 -0.2 565,911 + PfGW456L13_494 0.33 +0.2 565,911 + PfGW456L13_494 0.33 -1.8 565,911 + PfGW456L13_494 0.33 -0.0 565,911 + PfGW456L13_494 0.33 -0.1 565,912 - PfGW456L13_494 0.33 -0.7 565,912 - PfGW456L13_494 0.33 +0.1 565,912 - PfGW456L13_494 0.33 +0.5 565,912 - PfGW456L13_494 0.33 -0.6 566,042 + PfGW456L13_494 0.43 -1.8 566,042 + PfGW456L13_494 0.43 -2.6 566,043 - PfGW456L13_494 0.43 -0.7 566,043 - PfGW456L13_494 0.43 -0.3 566,043 - PfGW456L13_494 0.43 -1.0 566,121 + PfGW456L13_494 0.49 -0.1 566,121 + PfGW456L13_494 0.49 +1.3 566,121 + PfGW456L13_494 0.49 -1.9 566,121 + PfGW456L13_494 0.49 -0.0 566,121 + PfGW456L13_494 0.49 -0.5 566,121 + PfGW456L13_494 0.49 +1.0 566,121 + PfGW456L13_494 0.49 -1.9 566,121 + PfGW456L13_494 0.49 -2.3 566,121 + PfGW456L13_494 0.49 -0.3 566,122 - PfGW456L13_494 0.49 -0.0 566,122 - PfGW456L13_494 0.49 -1.3 566,122 - PfGW456L13_494 0.49 -0.2 566,122 - PfGW456L13_494 0.49 +0.1 566,122 - PfGW456L13_494 0.49 -1.0 566,122 - PfGW456L13_494 0.49 -1.1 566,122 - PfGW456L13_494 0.49 +0.1 566,122 - PfGW456L13_494 0.49 -2.0 566,254 - PfGW456L13_494 0.60 +0.9 566,255 + PfGW456L13_494 0.60 -0.7 566,255 + PfGW456L13_494 0.60 +0.3 566,255 + PfGW456L13_494 0.60 -1.1 566,302 - PfGW456L13_494 0.64 -1.2
Or see this region's nucleotide sequence