Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_264 and PfGW456L13_265 are separated by 3 nucleotides PfGW456L13_265 and PfGW456L13_266 are separated by 4 nucleotides
PfGW456L13_264 - General secretion pathway protein F, at 306,090 to 307,295
_264
PfGW456L13_265 - General secretion pathway protein E, at 307,299 to 308,771
_265
PfGW456L13_266 - General secretion pathway protein D, at 308,776 to 310,695
_266
Position (kb) 307
308
309 Strain fitness (log2 ratio) -2
-1
0
1
2 at 306.736 kb on + strand, within PfGW456L13_264 at 306.736 kb on + strand, within PfGW456L13_264 at 306.736 kb on + strand, within PfGW456L13_264 at 306.737 kb on - strand, within PfGW456L13_264 at 306.737 kb on - strand, within PfGW456L13_264 at 306.790 kb on + strand, within PfGW456L13_264 at 307.477 kb on + strand, within PfGW456L13_265 at 307.477 kb on + strand, within PfGW456L13_265 at 307.477 kb on + strand, within PfGW456L13_265 at 307.478 kb on - strand, within PfGW456L13_265 at 307.675 kb on + strand, within PfGW456L13_265 at 307.675 kb on + strand, within PfGW456L13_265 at 307.675 kb on + strand, within PfGW456L13_265 at 307.676 kb on - strand, within PfGW456L13_265 at 307.919 kb on - strand, within PfGW456L13_265 at 307.919 kb on - strand, within PfGW456L13_265 at 307.985 kb on - strand, within PfGW456L13_265 at 308.033 kb on + strand, within PfGW456L13_265 at 308.034 kb on - strand at 308.345 kb on + strand, within PfGW456L13_265 at 308.346 kb on - strand, within PfGW456L13_265 at 308.359 kb on + strand, within PfGW456L13_265 at 308.359 kb on + strand, within PfGW456L13_265 at 308.360 kb on - strand, within PfGW456L13_265 at 308.590 kb on + strand, within PfGW456L13_265 at 308.590 kb on + strand, within PfGW456L13_265 at 308.675 kb on + strand at 308.675 kb on + strand at 308.676 kb on - strand at 308.909 kb on + strand at 308.910 kb on - strand at 308.910 kb on - strand at 308.943 kb on + strand at 309.029 kb on + strand, within PfGW456L13_266 at 309.230 kb on - strand, within PfGW456L13_266 at 309.251 kb on + strand, within PfGW456L13_266 at 309.251 kb on + strand, within PfGW456L13_266 at 309.251 kb on + strand, within PfGW456L13_266 at 309.251 kb on + strand, within PfGW456L13_266 at 309.251 kb on + strand, within PfGW456L13_266 at 309.251 kb on + strand, within PfGW456L13_266 at 309.251 kb on + strand, within PfGW456L13_266 at 309.251 kb on + strand, within PfGW456L13_266 at 309.251 kb on + strand, within PfGW456L13_266 at 309.251 kb on + strand, within PfGW456L13_266 at 309.251 kb on + strand, within PfGW456L13_266 at 309.251 kb on + strand, within PfGW456L13_266 at 309.252 kb on - strand, within PfGW456L13_266 at 309.252 kb on - strand, within PfGW456L13_266 at 309.252 kb on - strand, within PfGW456L13_266 at 309.252 kb on - strand, within PfGW456L13_266 at 309.252 kb on - strand, within PfGW456L13_266 at 309.252 kb on - strand, within PfGW456L13_266 at 309.252 kb on - strand, within PfGW456L13_266 at 309.252 kb on - strand, within PfGW456L13_266 at 309.335 kb on + strand, within PfGW456L13_266 at 309.335 kb on + strand, within PfGW456L13_266 at 309.336 kb on - strand, within PfGW456L13_266 at 309.336 kb on - strand, within PfGW456L13_266
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 306,736 + PfGW456L13_264 0.54 -0.4 306,736 + PfGW456L13_264 0.54 +1.9 306,736 + PfGW456L13_264 0.54 +0.6 306,737 - PfGW456L13_264 0.54 -0.6 306,737 - PfGW456L13_264 0.54 +0.4 306,790 + PfGW456L13_264 0.58 +0.6 307,477 + PfGW456L13_265 0.12 +0.7 307,477 + PfGW456L13_265 0.12 -1.6 307,477 + PfGW456L13_265 0.12 -0.7 307,478 - PfGW456L13_265 0.12 +1.4 307,675 + PfGW456L13_265 0.26 +2.7 307,675 + PfGW456L13_265 0.26 +0.5 307,675 + PfGW456L13_265 0.26 +1.1 307,676 - PfGW456L13_265 0.26 +1.2 307,919 - PfGW456L13_265 0.42 -0.1 307,919 - PfGW456L13_265 0.42 -0.3 307,985 - PfGW456L13_265 0.47 -0.8 308,033 + PfGW456L13_265 0.50 -0.0 308,034 - +1.1 308,345 + PfGW456L13_265 0.71 +0.9 308,346 - PfGW456L13_265 0.71 +0.3 308,359 + PfGW456L13_265 0.72 +1.7 308,359 + PfGW456L13_265 0.72 -0.8 308,360 - PfGW456L13_265 0.72 -0.1 308,590 + PfGW456L13_265 0.88 -1.0 308,590 + PfGW456L13_265 0.88 +1.3 308,675 + +1.0 308,675 + +0.7 308,676 - -0.8 308,909 + -0.4 308,910 - +0.4 308,910 - -0.2 308,943 + -0.3 309,029 + PfGW456L13_266 0.13 +0.5 309,230 - PfGW456L13_266 0.24 -0.0 309,251 + PfGW456L13_266 0.25 -0.2 309,251 + PfGW456L13_266 0.25 +1.0 309,251 + PfGW456L13_266 0.25 -0.9 309,251 + PfGW456L13_266 0.25 -0.1 309,251 + PfGW456L13_266 0.25 -0.2 309,251 + PfGW456L13_266 0.25 +0.7 309,251 + PfGW456L13_266 0.25 -1.2 309,251 + PfGW456L13_266 0.25 +0.0 309,251 + PfGW456L13_266 0.25 -1.2 309,251 + PfGW456L13_266 0.25 +0.2 309,251 + PfGW456L13_266 0.25 +0.1 309,251 + PfGW456L13_266 0.25 +0.3 309,252 - PfGW456L13_266 0.25 +0.5 309,252 - PfGW456L13_266 0.25 +1.1 309,252 - PfGW456L13_266 0.25 +0.7 309,252 - PfGW456L13_266 0.25 +1.0 309,252 - PfGW456L13_266 0.25 -2.3 309,252 - PfGW456L13_266 0.25 +0.3 309,252 - PfGW456L13_266 0.25 -1.2 309,252 - PfGW456L13_266 0.25 -0.3 309,335 + PfGW456L13_266 0.29 +0.3 309,335 + PfGW456L13_266 0.29 +0.3 309,336 - PfGW456L13_266 0.29 -0.9 309,336 - PfGW456L13_266 0.29 +0.9
Or see this region's nucleotide sequence