Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_5189 and PfGW456L13_1578 are separated by 36 nucleotides PfGW456L13_1578 and PfGW456L13_1579 are separated by 1 nucleotides PfGW456L13_1579 and PfGW456L13_1580 are separated by 4 nucleotides
PfGW456L13_5189 - tRNA-Gln-TTG, at 1,742,205 to 1,742,276
_5189
PfGW456L13_1578 - 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC 2.7.1.148), at 1,742,313 to 1,743,164
_1578
PfGW456L13_1579 - Outer membrane lipoprotein LolB precursor, at 1,743,166 to 1,743,783
_1579
PfGW456L13_1580 - FIG140336: TPR domain protein, at 1,743,788 to 1,745,494
_1580
Position (kb) 1743
1744 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 1742.195 kb on - strand at 1742.195 kb on - strand at 1742.279 kb on - strand at 1743.784 kb on - strand at 1743.784 kb on - strand at 1743.784 kb on - strand at 1743.790 kb on - strand at 1744.006 kb on - strand, within PfGW456L13_1580 at 1744.120 kb on - strand, within PfGW456L13_1580 at 1744.172 kb on - strand, within PfGW456L13_1580 at 1744.172 kb on - strand, within PfGW456L13_1580 at 1744.234 kb on - strand, within PfGW456L13_1580 at 1744.354 kb on - strand, within PfGW456L13_1580 at 1744.388 kb on - strand, within PfGW456L13_1580 at 1744.388 kb on - strand, within PfGW456L13_1580 at 1744.388 kb on - strand, within PfGW456L13_1580 at 1744.388 kb on - strand, within PfGW456L13_1580 at 1744.388 kb on - strand, within PfGW456L13_1580 at 1744.388 kb on - strand, within PfGW456L13_1580 at 1744.388 kb on - strand, within PfGW456L13_1580 at 1744.388 kb on - strand, within PfGW456L13_1580 at 1744.388 kb on - strand, within PfGW456L13_1580 at 1744.388 kb on - strand, within PfGW456L13_1580 at 1744.642 kb on - strand, within PfGW456L13_1580 at 1744.738 kb on - strand, within PfGW456L13_1580
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 1,742,195 - -1.1 1,742,195 - +0.7 1,742,279 - +0.6 1,743,784 - +0.6 1,743,784 - +0.7 1,743,784 - -1.1 1,743,790 - +1.1 1,744,006 - PfGW456L13_1580 0.13 -3.3 1,744,120 - PfGW456L13_1580 0.19 -0.6 1,744,172 - PfGW456L13_1580 0.22 -2.4 1,744,172 - PfGW456L13_1580 0.22 -2.5 1,744,234 - PfGW456L13_1580 0.26 -3.8 1,744,354 - PfGW456L13_1580 0.33 -3.1 1,744,388 - PfGW456L13_1580 0.35 -3.4 1,744,388 - PfGW456L13_1580 0.35 +0.4 1,744,388 - PfGW456L13_1580 0.35 -2.1 1,744,388 - PfGW456L13_1580 0.35 -2.7 1,744,388 - PfGW456L13_1580 0.35 -0.6 1,744,388 - PfGW456L13_1580 0.35 -2.4 1,744,388 - PfGW456L13_1580 0.35 -2.0 1,744,388 - PfGW456L13_1580 0.35 -0.9 1,744,388 - PfGW456L13_1580 0.35 -1.9 1,744,388 - PfGW456L13_1580 0.35 -2.3 1,744,642 - PfGW456L13_1580 0.50 -2.1 1,744,738 - PfGW456L13_1580 0.56 -1.9
Or see this region's nucleotide sequence