Experiment: Gentibiose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3656 and Atu3657 are separated by 268 nucleotides Atu3657 and Atu3658 are separated by 262 nucleotides Atu3658 and Atu3661 are separated by 508 nucleotides
Atu3656: Atu3656 - acetyltransferase, at 706,326 to 706,712
Atu3656
Atu3657: Atu3657 - hypothetical protein, at 706,981 to 707,229
Atu3657
Atu3658: Atu3658 - MerR family transcriptional regulator, at 707,492 to 708,577
Atu3658
Atu3661: Atu3661 - hypothetical protein, at 709,086 to 709,745
Atu3661
Position (kb) 707
708
709 Strain fitness (log2 ratio) -2
-1
0
1 at 706.499 kb on + strand, within Atu3656 at 706.507 kb on - strand, within Atu3656 at 706.507 kb on - strand, within Atu3656 at 706.509 kb on + strand, within Atu3656 at 706.512 kb on - strand, within Atu3656 at 706.524 kb on - strand, within Atu3656 at 706.534 kb on + strand, within Atu3656 at 706.682 kb on + strand at 706.683 kb on + strand at 706.687 kb on + strand at 706.687 kb on + strand at 706.690 kb on - strand at 706.695 kb on - strand at 706.703 kb on + strand at 706.766 kb on - strand at 706.835 kb on + strand at 706.858 kb on + strand at 706.983 kb on + strand at 707.012 kb on + strand, within Atu3657 at 707.012 kb on + strand, within Atu3657 at 707.020 kb on - strand, within Atu3657 at 707.169 kb on - strand, within Atu3657 at 707.169 kb on - strand, within Atu3657 at 707.171 kb on + strand, within Atu3657 at 707.226 kb on - strand at 707.301 kb on - strand at 707.321 kb on + strand at 707.321 kb on + strand at 707.359 kb on - strand at 707.365 kb on + strand at 707.432 kb on - strand at 707.541 kb on + strand at 707.541 kb on + strand at 707.541 kb on + strand at 707.541 kb on + strand at 707.549 kb on - strand at 707.549 kb on - strand at 707.549 kb on - strand at 707.549 kb on - strand at 707.602 kb on - strand, within Atu3658 at 707.641 kb on - strand, within Atu3658 at 707.691 kb on + strand, within Atu3658 at 707.691 kb on + strand, within Atu3658 at 707.691 kb on + strand, within Atu3658 at 707.691 kb on + strand, within Atu3658 at 707.691 kb on + strand, within Atu3658 at 707.691 kb on + strand, within Atu3658 at 707.691 kb on + strand, within Atu3658 at 707.691 kb on + strand, within Atu3658 at 707.691 kb on + strand, within Atu3658 at 707.691 kb on + strand, within Atu3658 at 707.691 kb on + strand, within Atu3658 at 707.691 kb on + strand, within Atu3658 at 707.691 kb on + strand, within Atu3658 at 707.691 kb on + strand, within Atu3658 at 707.691 kb on + strand, within Atu3658 at 707.691 kb on + strand, within Atu3658 at 707.691 kb on + strand, within Atu3658 at 707.691 kb on + strand, within Atu3658 at 707.691 kb on + strand, within Atu3658 at 707.691 kb on + strand, within Atu3658 at 707.691 kb on + strand, within Atu3658 at 707.691 kb on + strand, within Atu3658 at 707.691 kb on + strand, within Atu3658 at 707.691 kb on + strand, within Atu3658 at 707.691 kb on + strand, within Atu3658 at 707.691 kb on + strand, within Atu3658 at 707.691 kb on + strand, within Atu3658 at 707.691 kb on + strand, within Atu3658 at 707.691 kb on + strand, within Atu3658 at 707.691 kb on + strand, within Atu3658 at 707.691 kb on + strand, within Atu3658 at 707.691 kb on + strand, within Atu3658 at 707.691 kb on + strand, within Atu3658 at 707.691 kb on + strand, within Atu3658 at 707.691 kb on + strand, within Atu3658 at 707.699 kb on - strand, within Atu3658 at 707.699 kb on - strand, within Atu3658 at 707.699 kb on - strand, within Atu3658 at 707.699 kb on - strand, within Atu3658 at 707.699 kb on - strand, within Atu3658 at 707.699 kb on - strand, within Atu3658 at 707.699 kb on - strand, within Atu3658 at 707.699 kb on - strand, within Atu3658 at 707.699 kb on - strand, within Atu3658 at 707.699 kb on - strand, within Atu3658 at 707.699 kb on - strand, within Atu3658 at 707.699 kb on - strand, within Atu3658 at 707.699 kb on - strand, within Atu3658 at 707.699 kb on - strand, within Atu3658 at 707.699 kb on - strand, within Atu3658 at 707.699 kb on - strand, within Atu3658 at 707.699 kb on - strand, within Atu3658 at 707.699 kb on - strand, within Atu3658 at 707.699 kb on - strand, within Atu3658 at 707.699 kb on - strand, within Atu3658 at 707.699 kb on - strand, within Atu3658 at 707.699 kb on - strand, within Atu3658 at 707.699 kb on - strand, within Atu3658 at 707.699 kb on - strand, within Atu3658 at 707.699 kb on - strand, within Atu3658 at 707.699 kb on - strand, within Atu3658 at 707.738 kb on + strand, within Atu3658 at 707.779 kb on - strand, within Atu3658 at 707.862 kb on + strand, within Atu3658 at 707.915 kb on - strand, within Atu3658 at 707.917 kb on - strand, within Atu3658 at 707.947 kb on - strand, within Atu3658 at 707.947 kb on - strand, within Atu3658 at 707.963 kb on + strand, within Atu3658 at 708.000 kb on - strand, within Atu3658 at 708.025 kb on - strand, within Atu3658 at 708.069 kb on + strand, within Atu3658 at 708.074 kb on + strand, within Atu3658 at 708.079 kb on + strand, within Atu3658 at 708.079 kb on + strand, within Atu3658 at 708.127 kb on + strand, within Atu3658 at 708.136 kb on + strand, within Atu3658 at 708.180 kb on + strand, within Atu3658 at 708.188 kb on - strand, within Atu3658 at 708.201 kb on + strand, within Atu3658 at 708.216 kb on + strand, within Atu3658 at 708.234 kb on + strand, within Atu3658 at 708.298 kb on + strand, within Atu3658 at 708.300 kb on - strand, within Atu3658 at 708.305 kb on - strand, within Atu3658 at 708.353 kb on - strand, within Atu3658 at 708.407 kb on + strand, within Atu3658 at 708.421 kb on + strand, within Atu3658 at 708.434 kb on - strand, within Atu3658 at 708.535 kb on - strand at 708.538 kb on + strand at 708.541 kb on - strand at 708.680 kb on - strand at 708.695 kb on - strand at 708.845 kb on - strand at 708.880 kb on + strand at 708.888 kb on - strand at 709.107 kb on - strand at 709.165 kb on + strand, within Atu3661 at 709.197 kb on + strand, within Atu3661 at 709.205 kb on - strand, within Atu3661 at 709.207 kb on + strand, within Atu3661 at 709.215 kb on - strand, within Atu3661 at 709.299 kb on - strand, within Atu3661 at 709.342 kb on + strand, within Atu3661 at 709.350 kb on - strand, within Atu3661 at 709.369 kb on + strand, within Atu3661 at 709.369 kb on + strand, within Atu3661 at 709.369 kb on + strand, within Atu3661 at 709.369 kb on - strand, within Atu3661 at 709.376 kb on + strand, within Atu3661 at 709.423 kb on - strand, within Atu3661 at 709.438 kb on - strand, within Atu3661 at 709.539 kb on + strand, within Atu3661 at 709.539 kb on + strand, within Atu3661 at 709.547 kb on - strand, within Atu3661 at 709.547 kb on - strand, within Atu3661 at 709.547 kb on - strand, within Atu3661 at 709.558 kb on + strand, within Atu3661
Per-strain Table
Position Strand Gene LocusTag Fraction Gentibiose (C) remove 706,499 + Atu3656 0.45 +0.2 706,507 - Atu3656 0.47 +0.5 706,507 - Atu3656 0.47 +0.6 706,509 + Atu3656 0.47 -0.7 706,512 - Atu3656 0.48 +0.7 706,524 - Atu3656 0.51 +0.2 706,534 + Atu3656 0.54 -0.1 706,682 + +0.1 706,683 + +0.2 706,687 + +0.0 706,687 + +0.2 706,690 - +0.5 706,695 - +0.2 706,703 + +0.4 706,766 - +0.6 706,835 + -0.3 706,858 + +0.4 706,983 + +0.3 707,012 + Atu3657 0.12 +0.2 707,012 + Atu3657 0.12 +0.2 707,020 - Atu3657 0.16 +0.3 707,169 - Atu3657 0.76 +0.5 707,169 - Atu3657 0.76 +0.3 707,171 + Atu3657 0.76 +0.9 707,226 - -0.6 707,301 - +0.2 707,321 + -0.3 707,321 + -0.6 707,359 - +0.8 707,365 + +0.6 707,432 - -0.6 707,541 + -0.2 707,541 + +1.4 707,541 + +0.2 707,541 + +0.4 707,549 - -0.1 707,549 - -0.3 707,549 - +0.2 707,549 - +0.0 707,602 - Atu3658 0.10 +1.0 707,641 - Atu3658 0.14 -0.0 707,691 + Atu3658 0.18 +1.0 707,691 + Atu3658 0.18 +0.9 707,691 + Atu3658 0.18 +0.6 707,691 + Atu3658 0.18 +1.1 707,691 + Atu3658 0.18 +1.0 707,691 + Atu3658 0.18 +0.3 707,691 + Atu3658 0.18 +0.1 707,691 + Atu3658 0.18 -0.5 707,691 + Atu3658 0.18 +0.4 707,691 + Atu3658 0.18 +0.2 707,691 + Atu3658 0.18 +0.6 707,691 + Atu3658 0.18 -0.1 707,691 + Atu3658 0.18 +0.8 707,691 + Atu3658 0.18 +0.3 707,691 + Atu3658 0.18 +0.3 707,691 + Atu3658 0.18 -0.3 707,691 + Atu3658 0.18 +0.1 707,691 + Atu3658 0.18 +0.9 707,691 + Atu3658 0.18 +1.5 707,691 + Atu3658 0.18 +0.3 707,691 + Atu3658 0.18 +0.3 707,691 + Atu3658 0.18 -0.7 707,691 + Atu3658 0.18 +0.2 707,691 + Atu3658 0.18 +0.2 707,691 + Atu3658 0.18 -0.1 707,691 + Atu3658 0.18 -0.6 707,691 + Atu3658 0.18 +0.9 707,691 + Atu3658 0.18 +1.3 707,691 + Atu3658 0.18 +0.0 707,691 + Atu3658 0.18 -0.3 707,691 + Atu3658 0.18 -0.2 707,691 + Atu3658 0.18 +0.0 707,691 + Atu3658 0.18 +0.5 707,691 + Atu3658 0.18 +0.4 707,691 + Atu3658 0.18 +0.8 707,699 - Atu3658 0.19 +0.6 707,699 - Atu3658 0.19 +0.2 707,699 - Atu3658 0.19 -0.1 707,699 - Atu3658 0.19 +0.4 707,699 - Atu3658 0.19 -0.0 707,699 - Atu3658 0.19 +0.5 707,699 - Atu3658 0.19 +0.3 707,699 - Atu3658 0.19 +0.7 707,699 - Atu3658 0.19 +0.4 707,699 - Atu3658 0.19 +1.3 707,699 - Atu3658 0.19 -0.8 707,699 - Atu3658 0.19 +0.0 707,699 - Atu3658 0.19 -0.9 707,699 - Atu3658 0.19 +0.2 707,699 - Atu3658 0.19 +1.7 707,699 - Atu3658 0.19 +0.8 707,699 - Atu3658 0.19 +1.1 707,699 - Atu3658 0.19 +0.4 707,699 - Atu3658 0.19 +0.9 707,699 - Atu3658 0.19 -0.1 707,699 - Atu3658 0.19 +0.3 707,699 - Atu3658 0.19 -0.3 707,699 - Atu3658 0.19 +0.8 707,699 - Atu3658 0.19 +0.1 707,699 - Atu3658 0.19 +0.1 707,699 - Atu3658 0.19 +0.1 707,738 + Atu3658 0.23 +0.5 707,779 - Atu3658 0.26 +0.4 707,862 + Atu3658 0.34 +0.4 707,915 - Atu3658 0.39 +0.3 707,917 - Atu3658 0.39 +0.0 707,947 - Atu3658 0.42 +0.9 707,947 - Atu3658 0.42 +0.6 707,963 + Atu3658 0.43 -1.8 708,000 - Atu3658 0.47 +0.5 708,025 - Atu3658 0.49 +0.3 708,069 + Atu3658 0.53 -0.3 708,074 + Atu3658 0.54 +0.1 708,079 + Atu3658 0.54 +0.9 708,079 + Atu3658 0.54 +1.0 708,127 + Atu3658 0.58 +1.4 708,136 + Atu3658 0.59 +1.1 708,180 + Atu3658 0.63 -0.0 708,188 - Atu3658 0.64 -0.3 708,201 + Atu3658 0.65 +0.7 708,216 + Atu3658 0.67 +0.3 708,234 + Atu3658 0.68 +1.3 708,298 + Atu3658 0.74 -0.8 708,300 - Atu3658 0.74 +0.3 708,305 - Atu3658 0.75 -0.1 708,353 - Atu3658 0.79 +0.0 708,407 + Atu3658 0.84 +0.1 708,421 + Atu3658 0.86 +0.1 708,434 - Atu3658 0.87 +0.8 708,535 - +0.0 708,538 + +1.4 708,541 - +0.4 708,680 - +0.7 708,695 - -0.6 708,845 - -1.3 708,880 + +0.3 708,888 - -0.3 709,107 - +0.3 709,165 + Atu3661 0.12 +0.5 709,197 + Atu3661 0.17 +0.2 709,205 - Atu3661 0.18 +0.2 709,207 + Atu3661 0.18 +0.9 709,215 - Atu3661 0.20 +0.2 709,299 - Atu3661 0.32 +0.1 709,342 + Atu3661 0.39 -1.3 709,350 - Atu3661 0.40 +0.3 709,369 + Atu3661 0.43 -0.4 709,369 + Atu3661 0.43 -0.1 709,369 + Atu3661 0.43 +0.2 709,369 - Atu3661 0.43 -0.3 709,376 + Atu3661 0.44 +1.1 709,423 - Atu3661 0.51 +0.1 709,438 - Atu3661 0.53 +0.3 709,539 + Atu3661 0.69 +0.4 709,539 + Atu3661 0.69 -0.6 709,547 - Atu3661 0.70 +0.4 709,547 - Atu3661 0.70 -0.0 709,547 - Atu3661 0.70 +1.0 709,558 + Atu3661 0.72 +0.2
Or see this region's nucleotide sequence