Strain Fitness in Pseudomonas sp. RS175 around PFR28_03821

Experiment: D-Galacturonic Acid (C) 10 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPFR28_03819 and PFR28_03820 are separated by 21 nucleotidesPFR28_03820 and PFR28_03821 overlap by 4 nucleotidesPFR28_03821 and PFR28_03822 are separated by 103 nucleotidesPFR28_03822 and PFR28_03823 are separated by 73 nucleotides PFR28_03819: PFR28_03819 - hypothetical protein, at 4,393,444 to 4,394,391 _03819 PFR28_03820: PFR28_03820 - Phosphoglycolate phosphatase, at 4,394,413 to 4,395,006 _03820 PFR28_03821: PFR28_03821 - Acyl-CoA thioesterase 2, at 4,395,003 to 4,395,872 _03821 PFR28_03822: PFR28_03822 - Acetyltransferase, at 4,395,976 to 4,396,545 _03822 PFR28_03823: PFR28_03823 - hypothetical protein, at 4,396,619 to 4,397,539 _03823 Position (kb) 4395 4396Strain fitness (log2 ratio) -2 -1 0 1at 4394.003 kb on - strand, within PFR28_03819at 4394.003 kb on - strand, within PFR28_03819at 4394.003 kb on - strand, within PFR28_03819at 4394.003 kb on - strand, within PFR28_03819at 4394.003 kb on - strand, within PFR28_03819at 4394.008 kb on + strand, within PFR28_03819at 4394.008 kb on + strand, within PFR28_03819at 4394.009 kb on - strand, within PFR28_03819at 4394.009 kb on - strand, within PFR28_03819at 4394.009 kb on - strand, within PFR28_03819at 4394.074 kb on + strand, within PFR28_03819at 4394.074 kb on + strand, within PFR28_03819at 4394.074 kb on + strand, within PFR28_03819at 4394.075 kb on - strand, within PFR28_03819at 4394.075 kb on - strand, within PFR28_03819at 4394.075 kb on - strand, within PFR28_03819at 4394.098 kb on + strand, within PFR28_03819at 4394.099 kb on - strand, within PFR28_03819at 4394.099 kb on - strand, within PFR28_03819at 4394.137 kb on + strand, within PFR28_03819at 4394.137 kb on + strand, within PFR28_03819at 4394.137 kb on + strand, within PFR28_03819at 4394.137 kb on + strand, within PFR28_03819at 4394.137 kb on + strand, within PFR28_03819at 4394.137 kb on + strand, within PFR28_03819at 4394.138 kb on - strand, within PFR28_03819at 4394.138 kb on - strand, within PFR28_03819at 4394.138 kb on - strand, within PFR28_03819at 4394.138 kb on - strand, within PFR28_03819at 4394.138 kb on - strand, within PFR28_03819at 4394.138 kb on - strand, within PFR28_03819at 4394.158 kb on + strand, within PFR28_03819at 4394.158 kb on + strand, within PFR28_03819at 4394.159 kb on - strand, within PFR28_03819at 4394.159 kb on - strand, within PFR28_03819at 4394.270 kb on - strand, within PFR28_03819at 4394.319 kb on - strandat 4394.319 kb on - strandat 4395.133 kb on + strand, within PFR28_03821at 4395.134 kb on - strand, within PFR28_03821at 4395.203 kb on + strand, within PFR28_03821at 4395.204 kb on - strand, within PFR28_03821at 4395.271 kb on + strand, within PFR28_03821at 4395.271 kb on + strand, within PFR28_03821at 4395.271 kb on + strand, within PFR28_03821at 4395.271 kb on + strand, within PFR28_03821at 4395.271 kb on + strand, within PFR28_03821at 4395.271 kb on + strand, within PFR28_03821at 4395.271 kb on + strand, within PFR28_03821at 4395.271 kb on + strand, within PFR28_03821at 4395.272 kb on - strand, within PFR28_03821at 4395.272 kb on - strand, within PFR28_03821at 4395.272 kb on - strand, within PFR28_03821at 4395.272 kb on - strand, within PFR28_03821at 4395.272 kb on - strand, within PFR28_03821at 4395.272 kb on - strand, within PFR28_03821at 4395.283 kb on + strand, within PFR28_03821at 4395.283 kb on + strand, within PFR28_03821at 4395.283 kb on + strand, within PFR28_03821at 4395.283 kb on + strand, within PFR28_03821at 4395.283 kb on + strand, within PFR28_03821at 4395.283 kb on + strand, within PFR28_03821at 4395.284 kb on - strand, within PFR28_03821at 4395.284 kb on - strand, within PFR28_03821at 4395.284 kb on - strand, within PFR28_03821at 4395.337 kb on + strand, within PFR28_03821at 4395.337 kb on + strand, within PFR28_03821at 4395.337 kb on + strand, within PFR28_03821at 4395.337 kb on + strand, within PFR28_03821at 4395.338 kb on - strand, within PFR28_03821at 4395.338 kb on - strand, within PFR28_03821at 4395.338 kb on - strand, within PFR28_03821at 4395.338 kb on - strand, within PFR28_03821at 4395.367 kb on + strand, within PFR28_03821at 4395.367 kb on + strand, within PFR28_03821at 4395.367 kb on + strand, within PFR28_03821at 4395.368 kb on - strand, within PFR28_03821at 4395.368 kb on - strand, within PFR28_03821at 4395.368 kb on - strand, within PFR28_03821at 4395.368 kb on - strand, within PFR28_03821at 4395.545 kb on - strand, within PFR28_03821at 4395.686 kb on - strand, within PFR28_03821at 4395.896 kb on + strandat 4395.896 kb on + strandat 4395.897 kb on - strandat 4395.897 kb on - strandat 4395.960 kb on + strandat 4395.960 kb on + strandat 4395.960 kb on + strandat 4395.961 kb on - strandat 4395.961 kb on - strandat 4395.961 kb on - strandat 4395.961 kb on - strandat 4395.961 kb on - strandat 4396.437 kb on - strand, within PFR28_03822at 4396.534 kb on + strandat 4396.534 kb on + strandat 4396.534 kb on + strandat 4396.535 kb on - strandat 4396.573 kb on + strandat 4396.573 kb on + strandat 4396.574 kb on - strandat 4396.637 kb on + strandat 4396.638 kb on - strandat 4396.649 kb on + strandat 4396.649 kb on + strandat 4396.650 kb on - strandat 4396.650 kb on - strandat 4396.805 kb on + strand, within PFR28_03823at 4396.805 kb on + strand, within PFR28_03823at 4396.806 kb on - strand, within PFR28_03823at 4396.806 kb on - strand, within PFR28_03823at 4396.806 kb on - strand, within PFR28_03823at 4396.807 kb on + strand, within PFR28_03823at 4396.807 kb on + strand, within PFR28_03823at 4396.817 kb on + strand, within PFR28_03823at 4396.817 kb on + strand, within PFR28_03823at 4396.817 kb on + strand, within PFR28_03823at 4396.818 kb on - strand, within PFR28_03823at 4396.818 kb on - strand, within PFR28_03823at 4396.818 kb on - strand, within PFR28_03823at 4396.818 kb on - strand, within PFR28_03823at 4396.818 kb on - strand, within PFR28_03823

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Galacturonic Acid (C) 10 mM
remove
4,394,003 - PFR28_03819 0.59 +0.3
4,394,003 - PFR28_03819 0.59 -0.2
4,394,003 - PFR28_03819 0.59 -1.5
4,394,003 - PFR28_03819 0.59 -0.6
4,394,003 - PFR28_03819 0.59 -1.2
4,394,008 + PFR28_03819 0.59 +0.0
4,394,008 + PFR28_03819 0.59 -1.0
4,394,009 - PFR28_03819 0.60 +0.4
4,394,009 - PFR28_03819 0.60 -0.3
4,394,009 - PFR28_03819 0.60 -0.7
4,394,074 + PFR28_03819 0.66 +0.2
4,394,074 + PFR28_03819 0.66 +1.3
4,394,074 + PFR28_03819 0.66 +0.4
4,394,075 - PFR28_03819 0.67 -0.6
4,394,075 - PFR28_03819 0.67 -0.9
4,394,075 - PFR28_03819 0.67 +0.0
4,394,098 + PFR28_03819 0.69 -0.2
4,394,099 - PFR28_03819 0.69 +0.4
4,394,099 - PFR28_03819 0.69 +1.1
4,394,137 + PFR28_03819 0.73 -0.4
4,394,137 + PFR28_03819 0.73 +0.1
4,394,137 + PFR28_03819 0.73 -0.1
4,394,137 + PFR28_03819 0.73 +0.6
4,394,137 + PFR28_03819 0.73 +0.3
4,394,137 + PFR28_03819 0.73 -1.2
4,394,138 - PFR28_03819 0.73 +1.1
4,394,138 - PFR28_03819 0.73 -0.4
4,394,138 - PFR28_03819 0.73 -0.2
4,394,138 - PFR28_03819 0.73 +0.5
4,394,138 - PFR28_03819 0.73 -0.7
4,394,138 - PFR28_03819 0.73 -0.9
4,394,158 + PFR28_03819 0.75 +1.3
4,394,158 + PFR28_03819 0.75 -0.3
4,394,159 - PFR28_03819 0.75 +0.4
4,394,159 - PFR28_03819 0.75 -0.6
4,394,270 - PFR28_03819 0.87 -0.2
4,394,319 - +1.0
4,394,319 - +0.3
4,395,133 + PFR28_03821 0.15 -0.1
4,395,134 - PFR28_03821 0.15 -1.0
4,395,203 + PFR28_03821 0.23 -0.2
4,395,204 - PFR28_03821 0.23 -0.7
4,395,271 + PFR28_03821 0.31 -0.7
4,395,271 + PFR28_03821 0.31 -1.4
4,395,271 + PFR28_03821 0.31 -0.9
4,395,271 + PFR28_03821 0.31 -0.0
4,395,271 + PFR28_03821 0.31 +0.1
4,395,271 + PFR28_03821 0.31 +0.1
4,395,271 + PFR28_03821 0.31 -1.5
4,395,271 + PFR28_03821 0.31 +0.4
4,395,272 - PFR28_03821 0.31 -0.8
4,395,272 - PFR28_03821 0.31 +0.0
4,395,272 - PFR28_03821 0.31 -0.6
4,395,272 - PFR28_03821 0.31 -0.1
4,395,272 - PFR28_03821 0.31 -0.3
4,395,272 - PFR28_03821 0.31 +0.2
4,395,283 + PFR28_03821 0.32 -1.2
4,395,283 + PFR28_03821 0.32 -0.1
4,395,283 + PFR28_03821 0.32 +0.3
4,395,283 + PFR28_03821 0.32 +0.5
4,395,283 + PFR28_03821 0.32 -0.1
4,395,283 + PFR28_03821 0.32 -0.3
4,395,284 - PFR28_03821 0.32 +0.3
4,395,284 - PFR28_03821 0.32 -0.1
4,395,284 - PFR28_03821 0.32 -0.5
4,395,337 + PFR28_03821 0.38 -0.9
4,395,337 + PFR28_03821 0.38 -0.0
4,395,337 + PFR28_03821 0.38 +0.4
4,395,337 + PFR28_03821 0.38 +0.7
4,395,338 - PFR28_03821 0.39 -0.7
4,395,338 - PFR28_03821 0.39 -0.9
4,395,338 - PFR28_03821 0.39 +0.3
4,395,338 - PFR28_03821 0.39 -1.2
4,395,367 + PFR28_03821 0.42 +0.3
4,395,367 + PFR28_03821 0.42 -0.5
4,395,367 + PFR28_03821 0.42 +0.2
4,395,368 - PFR28_03821 0.42 -1.0
4,395,368 - PFR28_03821 0.42 -1.6
4,395,368 - PFR28_03821 0.42 +0.5
4,395,368 - PFR28_03821 0.42 -0.2
4,395,545 - PFR28_03821 0.62 -0.3
4,395,686 - PFR28_03821 0.79 +0.9
4,395,896 + -1.7
4,395,896 + -0.2
4,395,897 - -0.3
4,395,897 - +0.2
4,395,960 + -0.3
4,395,960 + -1.2
4,395,960 + +0.1
4,395,961 - -0.0
4,395,961 - -0.5
4,395,961 - +0.2
4,395,961 - -0.3
4,395,961 - +0.3
4,396,437 - PFR28_03822 0.81 +0.4
4,396,534 + -1.9
4,396,534 + -0.6
4,396,534 + +1.2
4,396,535 - -1.0
4,396,573 + -0.7
4,396,573 + -0.5
4,396,574 - -0.3
4,396,637 + -1.5
4,396,638 - +0.2
4,396,649 + -0.1
4,396,649 + -0.7
4,396,650 - +0.1
4,396,650 - +0.0
4,396,805 + PFR28_03823 0.20 -0.4
4,396,805 + PFR28_03823 0.20 +0.4
4,396,806 - PFR28_03823 0.20 +0.6
4,396,806 - PFR28_03823 0.20 -2.0
4,396,806 - PFR28_03823 0.20 +0.3
4,396,807 + PFR28_03823 0.20 -0.0
4,396,807 + PFR28_03823 0.20 +1.3
4,396,817 + PFR28_03823 0.21 +0.7
4,396,817 + PFR28_03823 0.21 -0.3
4,396,817 + PFR28_03823 0.21 -0.9
4,396,818 - PFR28_03823 0.22 +1.4
4,396,818 - PFR28_03823 0.22 +0.7
4,396,818 - PFR28_03823 0.22 +0.4
4,396,818 - PFR28_03823 0.22 +0.2
4,396,818 - PFR28_03823 0.22 +0.4

Or see this region's nucleotide sequence