Strain Fitness in Pseudomonas sp. RS175 around PFR28_00891

Experiment: D-Galacturonic Acid (C) 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00889 and PFR28_00890 are separated by 187 nucleotidesPFR28_00890 and PFR28_00891 are separated by 12 nucleotidesPFR28_00891 and PFR28_00892 are separated by 121 nucleotides PFR28_00889: PFR28_00889 - Fumarate hydratase class II, at 961,573 to 962,967 _00889 PFR28_00890: PFR28_00890 - hypothetical protein, at 963,155 to 963,673 _00890 PFR28_00891: PFR28_00891 - DNA-binding transcriptional regulator BolA, at 963,686 to 963,985 _00891 PFR28_00892: PFR28_00892 - hypothetical protein, at 964,107 to 965,048 _00892 Position (kb) 963 964Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 962.913 kb on - strandat 962.913 kb on - strandat 963.034 kb on + strandat 963.034 kb on + strandat 963.034 kb on + strandat 963.034 kb on + strandat 963.034 kb on + strandat 963.034 kb on + strandat 963.035 kb on - strandat 963.035 kb on - strandat 963.096 kb on + strandat 963.096 kb on + strandat 963.097 kb on - strandat 963.097 kb on - strandat 963.099 kb on + strandat 963.100 kb on - strandat 963.129 kb on - strandat 963.140 kb on + strandat 963.141 kb on - strandat 963.141 kb on - strandat 963.296 kb on + strand, within PFR28_00890at 963.296 kb on + strand, within PFR28_00890at 963.296 kb on + strand, within PFR28_00890at 963.296 kb on + strand, within PFR28_00890at 963.296 kb on + strand, within PFR28_00890at 963.296 kb on + strand, within PFR28_00890at 963.297 kb on - strand, within PFR28_00890at 963.297 kb on - strand, within PFR28_00890at 963.297 kb on - strand, within PFR28_00890at 963.297 kb on - strand, within PFR28_00890at 963.377 kb on + strand, within PFR28_00890at 963.377 kb on + strand, within PFR28_00890at 963.378 kb on - strand, within PFR28_00890at 963.378 kb on - strand, within PFR28_00890at 963.452 kb on + strand, within PFR28_00890at 963.452 kb on + strand, within PFR28_00890at 963.452 kb on + strand, within PFR28_00890at 963.453 kb on - strand, within PFR28_00890at 963.500 kb on + strand, within PFR28_00890at 963.500 kb on + strand, within PFR28_00890at 963.501 kb on - strand, within PFR28_00890at 963.501 kb on - strand, within PFR28_00890at 963.685 kb on + strandat 963.685 kb on + strandat 963.791 kb on + strand, within PFR28_00891at 963.791 kb on + strand, within PFR28_00891at 963.791 kb on + strand, within PFR28_00891at 963.792 kb on - strand, within PFR28_00891at 963.792 kb on - strand, within PFR28_00891at 963.792 kb on - strand, within PFR28_00891at 963.792 kb on - strand, within PFR28_00891at 963.911 kb on + strand, within PFR28_00891at 963.911 kb on + strand, within PFR28_00891at 963.911 kb on + strand, within PFR28_00891at 963.911 kb on + strand, within PFR28_00891at 963.911 kb on + strand, within PFR28_00891at 963.911 kb on + strand, within PFR28_00891at 963.911 kb on + strand, within PFR28_00891at 963.911 kb on + strand, within PFR28_00891at 963.911 kb on + strand, within PFR28_00891at 963.911 kb on + strand, within PFR28_00891at 963.911 kb on + strand, within PFR28_00891at 963.912 kb on - strand, within PFR28_00891at 963.912 kb on - strand, within PFR28_00891at 963.912 kb on - strand, within PFR28_00891at 963.912 kb on - strand, within PFR28_00891at 963.912 kb on - strand, within PFR28_00891at 963.912 kb on - strand, within PFR28_00891at 963.912 kb on - strand, within PFR28_00891at 963.912 kb on - strand, within PFR28_00891at 963.912 kb on - strand, within PFR28_00891at 963.912 kb on - strand, within PFR28_00891at 963.912 kb on - strand, within PFR28_00891at 963.912 kb on - strand, within PFR28_00891at 964.002 kb on - strandat 964.014 kb on + strandat 964.014 kb on + strandat 964.014 kb on + strandat 964.014 kb on + strandat 964.015 kb on - strandat 964.015 kb on - strandat 964.015 kb on - strandat 964.015 kb on - strandat 964.015 kb on - strandat 964.015 kb on - strandat 964.021 kb on + strandat 964.021 kb on + strandat 964.021 kb on + strandat 964.021 kb on + strandat 964.021 kb on + strandat 964.022 kb on - strandat 964.079 kb on - strandat 964.102 kb on + strandat 964.102 kb on + strandat 964.103 kb on - strandat 964.103 kb on - strandat 964.103 kb on - strandat 964.137 kb on + strandat 964.137 kb on + strandat 964.137 kb on + strandat 964.137 kb on + strandat 964.137 kb on + strandat 964.138 kb on - strandat 964.138 kb on - strandat 964.138 kb on - strandat 964.138 kb on - strandat 964.138 kb on - strandat 964.138 kb on - strandat 964.161 kb on + strandat 964.162 kb on - strandat 964.341 kb on + strand, within PFR28_00892at 964.341 kb on + strand, within PFR28_00892at 964.363 kb on - strand, within PFR28_00892at 964.363 kb on - strand, within PFR28_00892at 964.417 kb on + strand, within PFR28_00892at 964.443 kb on + strand, within PFR28_00892at 964.443 kb on + strand, within PFR28_00892at 964.443 kb on + strand, within PFR28_00892at 964.443 kb on + strand, within PFR28_00892at 964.443 kb on + strand, within PFR28_00892at 964.443 kb on + strand, within PFR28_00892at 964.443 kb on + strand, within PFR28_00892at 964.443 kb on + strand, within PFR28_00892at 964.443 kb on + strand, within PFR28_00892at 964.443 kb on + strand, within PFR28_00892at 964.444 kb on - strand, within PFR28_00892at 964.444 kb on - strand, within PFR28_00892at 964.444 kb on - strand, within PFR28_00892at 964.444 kb on - strand, within PFR28_00892at 964.444 kb on - strand, within PFR28_00892at 964.444 kb on - strand, within PFR28_00892at 964.444 kb on - strand, within PFR28_00892at 964.444 kb on - strand, within PFR28_00892at 964.444 kb on - strand, within PFR28_00892at 964.444 kb on - strand, within PFR28_00892at 964.587 kb on + strand, within PFR28_00892at 964.587 kb on + strand, within PFR28_00892at 964.588 kb on - strand, within PFR28_00892at 964.588 kb on - strand, within PFR28_00892at 964.588 kb on - strand, within PFR28_00892at 964.674 kb on + strand, within PFR28_00892at 964.674 kb on + strand, within PFR28_00892at 964.674 kb on + strand, within PFR28_00892at 964.674 kb on + strand, within PFR28_00892at 964.675 kb on - strand, within PFR28_00892at 964.675 kb on - strand, within PFR28_00892at 964.675 kb on - strand, within PFR28_00892at 964.675 kb on - strand, within PFR28_00892at 964.675 kb on - strand, within PFR28_00892at 964.675 kb on - strand, within PFR28_00892at 964.675 kb on - strand, within PFR28_00892at 964.731 kb on + strand, within PFR28_00892at 964.731 kb on + strand, within PFR28_00892at 964.731 kb on + strand, within PFR28_00892at 964.732 kb on - strand, within PFR28_00892at 964.830 kb on + strand, within PFR28_00892at 964.830 kb on + strand, within PFR28_00892at 964.831 kb on - strand, within PFR28_00892at 964.890 kb on + strand, within PFR28_00892at 964.890 kb on + strand, within PFR28_00892at 964.890 kb on + strand, within PFR28_00892at 964.890 kb on + strand, within PFR28_00892at 964.890 kb on + strand, within PFR28_00892at 964.890 kb on + strand, within PFR28_00892at 964.890 kb on + strand, within PFR28_00892at 964.891 kb on - strand, within PFR28_00892at 964.891 kb on - strand, within PFR28_00892at 964.891 kb on - strand, within PFR28_00892at 964.891 kb on - strand, within PFR28_00892at 964.891 kb on - strand, within PFR28_00892at 964.891 kb on - strand, within PFR28_00892at 964.891 kb on - strand, within PFR28_00892at 964.891 kb on - strand, within PFR28_00892at 964.891 kb on - strand, within PFR28_00892at 964.891 kb on - strand, within PFR28_00892

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galacturonic Acid (C) 10 mM
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962,913 - -0.0
962,913 - +0.0
963,034 + +0.3
963,034 + -0.1
963,034 + +1.0
963,034 + -0.2
963,034 + +0.4
963,034 + -0.9
963,035 - -0.6
963,035 - -0.3
963,096 + +0.2
963,096 + +0.2
963,097 - -3.1
963,097 - +0.6
963,099 + -0.4
963,100 - -1.1
963,129 - -0.8
963,140 + -1.1
963,141 - -0.4
963,141 - +0.2
963,296 + PFR28_00890 0.27 -0.2
963,296 + PFR28_00890 0.27 -0.1
963,296 + PFR28_00890 0.27 -0.4
963,296 + PFR28_00890 0.27 -2.0
963,296 + PFR28_00890 0.27 +0.0
963,296 + PFR28_00890 0.27 -0.9
963,297 - PFR28_00890 0.27 -0.2
963,297 - PFR28_00890 0.27 -0.5
963,297 - PFR28_00890 0.27 -0.9
963,297 - PFR28_00890 0.27 -1.1
963,377 + PFR28_00890 0.43 +0.2
963,377 + PFR28_00890 0.43 -0.1
963,378 - PFR28_00890 0.43 -0.5
963,378 - PFR28_00890 0.43 +1.7
963,452 + PFR28_00890 0.57 -0.8
963,452 + PFR28_00890 0.57 -2.9
963,452 + PFR28_00890 0.57 -0.9
963,453 - PFR28_00890 0.57 +0.4
963,500 + PFR28_00890 0.66 +0.5
963,500 + PFR28_00890 0.66 +0.3
963,501 - PFR28_00890 0.67 -2.8
963,501 - PFR28_00890 0.67 -2.6
963,685 + +0.1
963,685 + +0.1
963,791 + PFR28_00891 0.35 +0.4
963,791 + PFR28_00891 0.35 +0.7
963,791 + PFR28_00891 0.35 -0.3
963,792 - PFR28_00891 0.35 -0.3
963,792 - PFR28_00891 0.35 -0.9
963,792 - PFR28_00891 0.35 -1.9
963,792 - PFR28_00891 0.35 -0.7
963,911 + PFR28_00891 0.75 -0.6
963,911 + PFR28_00891 0.75 +0.3
963,911 + PFR28_00891 0.75 +0.5
963,911 + PFR28_00891 0.75 -0.4
963,911 + PFR28_00891 0.75 -0.9
963,911 + PFR28_00891 0.75 -1.4
963,911 + PFR28_00891 0.75 -0.5
963,911 + PFR28_00891 0.75 -1.8
963,911 + PFR28_00891 0.75 -1.9
963,911 + PFR28_00891 0.75 -1.1
963,911 + PFR28_00891 0.75 -1.9
963,912 - PFR28_00891 0.75 +0.5
963,912 - PFR28_00891 0.75 -2.4
963,912 - PFR28_00891 0.75 -0.3
963,912 - PFR28_00891 0.75 -0.8
963,912 - PFR28_00891 0.75 +0.1
963,912 - PFR28_00891 0.75 -1.2
963,912 - PFR28_00891 0.75 +0.1
963,912 - PFR28_00891 0.75 -0.2
963,912 - PFR28_00891 0.75 -1.1
963,912 - PFR28_00891 0.75 +0.5
963,912 - PFR28_00891 0.75 -0.8
963,912 - PFR28_00891 0.75 +0.1
964,002 - +0.2
964,014 + -0.3
964,014 + -0.5
964,014 + +1.0
964,014 + +0.0
964,015 - +0.2
964,015 - -0.7
964,015 - -0.3
964,015 - -0.9
964,015 - +0.5
964,015 - -0.1
964,021 + +1.0
964,021 + -0.2
964,021 + -0.0
964,021 + +0.5
964,021 + +0.9
964,022 - -0.0
964,079 - -0.1
964,102 + -0.6
964,102 + +0.1
964,103 - -0.7
964,103 - -0.9
964,103 - +0.8
964,137 + -0.4
964,137 + -1.4
964,137 + -2.6
964,137 + +0.5
964,137 + +0.4
964,138 - -0.1
964,138 - -0.3
964,138 - -0.9
964,138 - +2.0
964,138 - -0.3
964,138 - -0.9
964,161 + -0.1
964,162 - -0.3
964,341 + PFR28_00892 0.25 -0.5
964,341 + PFR28_00892 0.25 -0.9
964,363 - PFR28_00892 0.27 -0.3
964,363 - PFR28_00892 0.27 +0.0
964,417 + PFR28_00892 0.33 +0.1
964,443 + PFR28_00892 0.36 -0.9
964,443 + PFR28_00892 0.36 +0.5
964,443 + PFR28_00892 0.36 +0.6
964,443 + PFR28_00892 0.36 +1.0
964,443 + PFR28_00892 0.36 +0.2
964,443 + PFR28_00892 0.36 -0.1
964,443 + PFR28_00892 0.36 -0.1
964,443 + PFR28_00892 0.36 -0.1
964,443 + PFR28_00892 0.36 +1.5
964,443 + PFR28_00892 0.36 -0.9
964,444 - PFR28_00892 0.36 +1.1
964,444 - PFR28_00892 0.36 +0.2
964,444 - PFR28_00892 0.36 -1.2
964,444 - PFR28_00892 0.36 -0.2
964,444 - PFR28_00892 0.36 +0.0
964,444 - PFR28_00892 0.36 +0.4
964,444 - PFR28_00892 0.36 -1.2
964,444 - PFR28_00892 0.36 +1.1
964,444 - PFR28_00892 0.36 -0.2
964,444 - PFR28_00892 0.36 -0.5
964,587 + PFR28_00892 0.51 -0.3
964,587 + PFR28_00892 0.51 +1.1
964,588 - PFR28_00892 0.51 +0.8
964,588 - PFR28_00892 0.51 +0.1
964,588 - PFR28_00892 0.51 -0.3
964,674 + PFR28_00892 0.60 +1.3
964,674 + PFR28_00892 0.60 -0.2
964,674 + PFR28_00892 0.60 -0.1
964,674 + PFR28_00892 0.60 +0.0
964,675 - PFR28_00892 0.60 +0.5
964,675 - PFR28_00892 0.60 -0.7
964,675 - PFR28_00892 0.60 +0.7
964,675 - PFR28_00892 0.60 +0.8
964,675 - PFR28_00892 0.60 +1.1
964,675 - PFR28_00892 0.60 -0.1
964,675 - PFR28_00892 0.60 +2.0
964,731 + PFR28_00892 0.66 -0.3
964,731 + PFR28_00892 0.66 +0.6
964,731 + PFR28_00892 0.66 +0.1
964,732 - PFR28_00892 0.66 +0.4
964,830 + PFR28_00892 0.77 -0.6
964,830 + PFR28_00892 0.77 -0.3
964,831 - PFR28_00892 0.77 +0.7
964,890 + PFR28_00892 0.83 +0.1
964,890 + PFR28_00892 0.83 +0.4
964,890 + PFR28_00892 0.83 +2.0
964,890 + PFR28_00892 0.83 +0.5
964,890 + PFR28_00892 0.83 -0.1
964,890 + PFR28_00892 0.83 +0.1
964,890 + PFR28_00892 0.83 -0.3
964,891 - PFR28_00892 0.83 +1.7
964,891 - PFR28_00892 0.83 +0.4
964,891 - PFR28_00892 0.83 +0.4
964,891 - PFR28_00892 0.83 -0.1
964,891 - PFR28_00892 0.83 +0.8
964,891 - PFR28_00892 0.83 -2.6
964,891 - PFR28_00892 0.83 -0.5
964,891 - PFR28_00892 0.83 +0.0
964,891 - PFR28_00892 0.83 +0.0
964,891 - PFR28_00892 0.83 +0.1

Or see this region's nucleotide sequence