Strain Fitness in Pseudomonas simiae WCS417 around PS417_28065

Experiment: Ethanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_28060 and PS417_28065 are separated by 168 nucleotidesPS417_28065 and PS417_28070 are separated by 70 nucleotides PS417_28060: PS417_28060 - chemotaxis protein CheY, at 6,054,468 to 6,055,373 _28060 PS417_28065: PS417_28065 - transcriptional regulator PhoU, at 6,055,542 to 6,056,303 _28065 PS417_28070: PS417_28070 - phosphate ABC transporter ATP-binding protein, at 6,056,374 to 6,057,207 _28070 Position (kb) 6055 6056 6057Strain fitness (log2 ratio) -2 -1 0 1at 6055.297 kb on + strandat 6055.368 kb on - strandat 6055.388 kb on - strandat 6055.388 kb on - strandat 6055.391 kb on - strandat 6055.459 kb on + strandat 6055.459 kb on + strandat 6055.543 kb on + strandat 6055.543 kb on + strandat 6055.544 kb on - strandat 6055.544 kb on - strandat 6055.544 kb on - strandat 6055.544 kb on - strandat 6055.544 kb on - strandat 6055.544 kb on - strandat 6055.544 kb on - strandat 6055.544 kb on - strandat 6055.547 kb on + strandat 6055.548 kb on - strandat 6055.577 kb on + strandat 6055.654 kb on + strand, within PS417_28065at 6055.655 kb on - strand, within PS417_28065at 6056.327 kb on + strandat 6056.396 kb on + strandat 6056.396 kb on + strandat 6056.397 kb on - strandat 6056.397 kb on - strandat 6056.471 kb on + strand, within PS417_28070at 6056.471 kb on + strand, within PS417_28070at 6056.471 kb on + strand, within PS417_28070at 6056.472 kb on - strand, within PS417_28070at 6056.472 kb on - strand, within PS417_28070at 6056.472 kb on - strand, within PS417_28070at 6056.472 kb on - strand, within PS417_28070at 6056.472 kb on - strand, within PS417_28070at 6056.472 kb on - strand, within PS417_28070at 6056.825 kb on + strand, within PS417_28070at 6056.826 kb on - strand, within PS417_28070at 6056.925 kb on - strand, within PS417_28070at 6057.089 kb on + strand, within PS417_28070at 6057.224 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol (C)
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6,055,297 + -0.4
6,055,368 - -0.1
6,055,388 - -0.5
6,055,388 - +0.3
6,055,391 - +0.1
6,055,459 + -0.5
6,055,459 + -0.5
6,055,543 + -0.4
6,055,543 + +0.1
6,055,544 - -0.2
6,055,544 - +0.0
6,055,544 - +0.9
6,055,544 - +0.1
6,055,544 - -0.2
6,055,544 - -0.3
6,055,544 - -1.6
6,055,544 - +1.3
6,055,547 + -0.1
6,055,548 - -1.0
6,055,577 + -2.4
6,055,654 + PS417_28065 0.15 -1.3
6,055,655 - PS417_28065 0.15 +1.5
6,056,327 + -1.0
6,056,396 + -0.4
6,056,396 + +0.8
6,056,397 - -0.7
6,056,397 - +0.3
6,056,471 + PS417_28070 0.12 +0.4
6,056,471 + PS417_28070 0.12 -0.7
6,056,471 + PS417_28070 0.12 +0.2
6,056,472 - PS417_28070 0.12 -0.4
6,056,472 - PS417_28070 0.12 +0.3
6,056,472 - PS417_28070 0.12 +0.0
6,056,472 - PS417_28070 0.12 -0.4
6,056,472 - PS417_28070 0.12 +0.2
6,056,472 - PS417_28070 0.12 +0.1
6,056,825 + PS417_28070 0.54 -0.1
6,056,826 - PS417_28070 0.54 +0.5
6,056,925 - PS417_28070 0.66 -0.2
6,057,089 + PS417_28070 0.86 +0.5
6,057,224 + +0.0

Or see this region's nucleotide sequence