Strain Fitness in Pseudomonas simiae WCS417 around PS417_24845

Experiment: Ethanol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_24835 and PS417_24840 are separated by 6 nucleotidesPS417_24840 and PS417_24845 are separated by 109 nucleotidesPS417_24845 and PS417_24850 are separated by 214 nucleotides PS417_24835: PS417_24835 - hypothetical protein, at 5,387,061 to 5,387,717 _24835 PS417_24840: PS417_24840 - hypothetical protein, at 5,387,724 to 5,388,539 _24840 PS417_24845: PS417_24845 - inorganic pyrophosphatase, at 5,388,649 to 5,389,176 _24845 PS417_24850: PS417_24850 - transcriptional regulator, at 5,389,391 to 5,390,167 _24850 Position (kb) 5388 5389 5390Strain fitness (log2 ratio) -2 -1 0 1at 5388.168 kb on + strand, within PS417_24840at 5388.291 kb on + strand, within PS417_24840at 5388.292 kb on - strand, within PS417_24840at 5388.466 kb on - strandat 5388.544 kb on - strandat 5388.582 kb on + strandat 5389.310 kb on + strandat 5389.316 kb on + strandat 5389.317 kb on - strandat 5389.317 kb on - strandat 5389.317 kb on - strandat 5389.328 kb on + strandat 5389.329 kb on - strandat 5389.397 kb on - strandat 5389.670 kb on + strand, within PS417_24850at 5389.671 kb on - strand, within PS417_24850at 5389.735 kb on + strand, within PS417_24850at 5389.735 kb on + strand, within PS417_24850at 5389.735 kb on + strand, within PS417_24850at 5389.735 kb on + strand, within PS417_24850at 5389.735 kb on + strand, within PS417_24850at 5389.735 kb on + strand, within PS417_24850at 5389.736 kb on - strand, within PS417_24850at 5389.736 kb on - strand, within PS417_24850at 5389.736 kb on - strand, within PS417_24850at 5389.814 kb on + strand, within PS417_24850at 5389.815 kb on - strand, within PS417_24850at 5389.815 kb on - strand, within PS417_24850at 5389.815 kb on - strandat 5389.943 kb on + strand, within PS417_24850at 5389.943 kb on + strand, within PS417_24850at 5389.944 kb on - strand, within PS417_24850at 5389.944 kb on - strand, within PS417_24850at 5389.944 kb on - strand, within PS417_24850at 5389.944 kb on - strand, within PS417_24850at 5389.950 kb on - strand, within PS417_24850at 5390.012 kb on + strand, within PS417_24850at 5390.013 kb on - strand, within PS417_24850at 5390.013 kb on - strand, within PS417_24850at 5390.021 kb on + strand, within PS417_24850at 5390.022 kb on - strand, within PS417_24850at 5390.022 kb on - strand, within PS417_24850at 5390.121 kb on + strandat 5390.121 kb on + strandat 5390.122 kb on - strandat 5390.122 kb on - strandat 5390.122 kb on - strandat 5390.174 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol (C)
remove
5,388,168 + PS417_24840 0.54 -1.0
5,388,291 + PS417_24840 0.69 -0.3
5,388,292 - PS417_24840 0.70 -0.6
5,388,466 - -0.5
5,388,544 - -1.9
5,388,582 + +0.3
5,389,310 + +0.1
5,389,316 + +0.2
5,389,317 - +0.4
5,389,317 - +0.8
5,389,317 - -0.6
5,389,328 + -1.3
5,389,329 - -0.1
5,389,397 - +0.3
5,389,670 + PS417_24850 0.36 +1.2
5,389,671 - PS417_24850 0.36 -0.4
5,389,735 + PS417_24850 0.44 +0.4
5,389,735 + PS417_24850 0.44 -0.5
5,389,735 + PS417_24850 0.44 -0.7
5,389,735 + PS417_24850 0.44 -0.5
5,389,735 + PS417_24850 0.44 +0.1
5,389,735 + PS417_24850 0.44 -0.0
5,389,736 - PS417_24850 0.44 +0.2
5,389,736 - PS417_24850 0.44 +0.2
5,389,736 - PS417_24850 0.44 -0.3
5,389,814 + PS417_24850 0.54 +0.2
5,389,815 - PS417_24850 0.55 -0.1
5,389,815 - PS417_24850 0.55 +0.3
5,389,815 - +0.3
5,389,943 + PS417_24850 0.71 -0.8
5,389,943 + PS417_24850 0.71 +0.2
5,389,944 - PS417_24850 0.71 +0.1
5,389,944 - PS417_24850 0.71 +0.0
5,389,944 - PS417_24850 0.71 -0.0
5,389,944 - PS417_24850 0.71 +0.4
5,389,950 - PS417_24850 0.72 +0.8
5,390,012 + PS417_24850 0.80 +1.3
5,390,013 - PS417_24850 0.80 +0.1
5,390,013 - PS417_24850 0.80 -0.5
5,390,021 + PS417_24850 0.81 +0.1
5,390,022 - PS417_24850 0.81 +0.0
5,390,022 - PS417_24850 0.81 -0.8
5,390,121 + +0.3
5,390,121 + +0.5
5,390,122 - -0.3
5,390,122 - +0.6
5,390,122 - -0.8
5,390,174 + -0.3

Or see this region's nucleotide sequence