Strain Fitness in Pseudomonas simiae WCS417 around PS417_24645

Experiment: Ethanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_24635 and PS417_24640 are separated by 41 nucleotidesPS417_24640 and PS417_24645 are separated by 8 nucleotidesPS417_24645 and PS417_24650 are separated by 126 nucleotidesPS417_24650 and PS417_24655 are separated by 99 nucleotides PS417_24635: PS417_24635 - rRNA maturation factor, at 5,345,865 to 5,346,323 _24635 PS417_24640: PS417_24640 - magnesium transporter, at 5,346,365 to 5,347,204 _24640 PS417_24645: PS417_24645 - acyltransferase, at 5,347,213 to 5,348,736 _24645 PS417_24650: PS417_24650 - membrane protein, at 5,348,863 to 5,349,624 _24650 PS417_24655: PS417_24655 - hypothetical protein, at 5,349,724 to 5,350,041 _24655 Position (kb) 5347 5348 5349Strain fitness (log2 ratio) -1 0 1at 5346.956 kb on + strand, within PS417_24640at 5346.956 kb on + strand, within PS417_24640at 5349.088 kb on - strand, within PS417_24650at 5349.100 kb on + strandat 5349.100 kb on + strand, within PS417_24650at 5349.611 kb on + strandat 5349.637 kb on + strandat 5349.637 kb on + strandat 5349.637 kb on + strandat 5349.652 kb on + strandat 5349.653 kb on - strandat 5349.682 kb on + strandat 5349.692 kb on + strandat 5349.693 kb on - strandat 5349.726 kb on - strandat 5349.726 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol (C)
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5,346,956 + PS417_24640 0.70 -1.1
5,346,956 + PS417_24640 0.70 +0.5
5,349,088 - PS417_24650 0.30 +0.1
5,349,100 + -0.6
5,349,100 + PS417_24650 0.31 +0.5
5,349,611 + -0.1
5,349,637 + +0.3
5,349,637 + -0.2
5,349,637 + +0.1
5,349,652 + +0.6
5,349,653 - +1.6
5,349,682 + -0.2
5,349,692 + -0.3
5,349,693 - -0.6
5,349,726 - +0.5
5,349,726 - +0.2

Or see this region's nucleotide sequence