Experiment: Ethanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_24635 and PS417_24640 are separated by 41 nucleotides PS417_24640 and PS417_24645 are separated by 8 nucleotides PS417_24645 and PS417_24650 are separated by 126 nucleotides PS417_24650 and PS417_24655 are separated by 99 nucleotides
PS417_24635: PS417_24635 - rRNA maturation factor, at 5,345,865 to 5,346,323
_24635
PS417_24640: PS417_24640 - magnesium transporter, at 5,346,365 to 5,347,204
_24640
PS417_24645: PS417_24645 - acyltransferase, at 5,347,213 to 5,348,736
_24645
PS417_24650: PS417_24650 - membrane protein, at 5,348,863 to 5,349,624
_24650
PS417_24655: PS417_24655 - hypothetical protein, at 5,349,724 to 5,350,041
_24655
Position (kb)
5347
5348
5349 Strain fitness (log2 ratio)
-1
0
1 at 5346.956 kb on + strand, within PS417_24640 at 5346.956 kb on + strand, within PS417_24640 at 5349.088 kb on - strand, within PS417_24650 at 5349.100 kb on + strand at 5349.100 kb on + strand, within PS417_24650 at 5349.611 kb on + strand at 5349.637 kb on + strand at 5349.637 kb on + strand at 5349.637 kb on + strand at 5349.652 kb on + strand at 5349.653 kb on - strand at 5349.682 kb on + strand at 5349.692 kb on + strand at 5349.693 kb on - strand at 5349.726 kb on - strand at 5349.726 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol (C) remove 5,346,956 + PS417_24640 0.70 -1.1 5,346,956 + PS417_24640 0.70 +0.5 5,349,088 - PS417_24650 0.30 +0.1 5,349,100 + -0.6 5,349,100 + PS417_24650 0.31 +0.5 5,349,611 + -0.1 5,349,637 + +0.3 5,349,637 + -0.2 5,349,637 + +0.1 5,349,652 + +0.6 5,349,653 - +1.6 5,349,682 + -0.2 5,349,692 + -0.3 5,349,693 - -0.6 5,349,726 - +0.5 5,349,726 - +0.2
Or see this region's nucleotide sequence