Strain Fitness in Pseudomonas simiae WCS417 around PS417_24640

Experiment: Ethanol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_24630 and PS417_24635 overlap by 8 nucleotidesPS417_24635 and PS417_24640 are separated by 41 nucleotidesPS417_24640 and PS417_24645 are separated by 8 nucleotides PS417_24630: PS417_24630 - ATP-binding protein, at 5,344,868 to 5,345,872 _24630 PS417_24635: PS417_24635 - rRNA maturation factor, at 5,345,865 to 5,346,323 _24635 PS417_24640: PS417_24640 - magnesium transporter, at 5,346,365 to 5,347,204 _24640 PS417_24645: PS417_24645 - acyltransferase, at 5,347,213 to 5,348,736 _24645 Position (kb) 5346 5347 5348Strain fitness (log2 ratio) -1 0 1at 5345.453 kb on + strand, within PS417_24630at 5345.537 kb on + strand, within PS417_24630at 5345.813 kb on + strandat 5346.956 kb on + strand, within PS417_24640at 5346.956 kb on + strand, within PS417_24640

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol (C)
remove
5,345,453 + PS417_24630 0.58 +0.1
5,345,537 + PS417_24630 0.67 -1.1
5,345,813 + -0.2
5,346,956 + PS417_24640 0.70 -1.1
5,346,956 + PS417_24640 0.70 +0.5

Or see this region's nucleotide sequence