Strain Fitness in Pseudomonas simiae WCS417 around PS417_05520

Experiment: Ethanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_05515 and PS417_05520 overlap by 1 nucleotidesPS417_05520 and PS417_05525 overlap by 11 nucleotides PS417_05515: PS417_05515 - hypothetical protein, at 1,240,321 to 1,241,445 _05515 PS417_05520: PS417_05520 - histidine kinase, at 1,241,445 to 1,243,214 _05520 PS417_05525: PS417_05525 - Fis family transcriptional regulator, at 1,243,204 to 1,244,601 _05525 Position (kb) 1241 1242 1243 1244Strain fitness (log2 ratio) -1 0 1at 1240.609 kb on + strand, within PS417_05515at 1240.842 kb on - strand, within PS417_05515at 1240.873 kb on + strand, within PS417_05515at 1240.873 kb on + strand, within PS417_05515at 1240.874 kb on - strand, within PS417_05515at 1240.874 kb on - strand, within PS417_05515at 1240.874 kb on - strand, within PS417_05515at 1240.874 kb on - strand, within PS417_05515at 1240.874 kb on - strand, within PS417_05515at 1240.874 kb on - strand, within PS417_05515at 1241.099 kb on - strand, within PS417_05515at 1241.201 kb on - strand, within PS417_05515at 1241.201 kb on - strand, within PS417_05515at 1241.244 kb on + strand, within PS417_05515at 1241.244 kb on + strand, within PS417_05515at 1241.245 kb on - strand, within PS417_05515at 1241.245 kb on - strand, within PS417_05515at 1241.245 kb on - strand, within PS417_05515at 1241.257 kb on - strand, within PS417_05515at 1241.266 kb on + strand, within PS417_05515at 1241.266 kb on + strand, within PS417_05515at 1241.266 kb on + strand, within PS417_05515at 1241.267 kb on - strandat 1241.296 kb on - strand, within PS417_05515at 1241.296 kb on - strand, within PS417_05515at 1241.301 kb on - strand, within PS417_05515at 1241.301 kb on - strand, within PS417_05515at 1241.301 kb on - strand, within PS417_05515at 1241.382 kb on - strandat 1241.684 kb on + strand, within PS417_05520at 1241.685 kb on - strand, within PS417_05520at 1241.976 kb on + strand, within PS417_05520at 1242.036 kb on + strand, within PS417_05520at 1242.036 kb on + strand, within PS417_05520at 1242.183 kb on + strand, within PS417_05520at 1242.184 kb on - strand, within PS417_05520at 1242.184 kb on - strand, within PS417_05520at 1242.184 kb on - strand, within PS417_05520at 1242.461 kb on + strand, within PS417_05520at 1242.473 kb on + strand, within PS417_05520at 1242.474 kb on - strand, within PS417_05520at 1242.474 kb on - strand, within PS417_05520at 1242.748 kb on + strand, within PS417_05520at 1242.749 kb on - strand, within PS417_05520at 1242.749 kb on - strand, within PS417_05520at 1242.815 kb on + strand, within PS417_05520at 1242.815 kb on + strand, within PS417_05520at 1242.815 kb on + strand, within PS417_05520at 1242.816 kb on - strand, within PS417_05520at 1242.816 kb on - strand, within PS417_05520at 1242.818 kb on + strand, within PS417_05520at 1242.861 kb on + strand, within PS417_05520at 1243.167 kb on + strandat 1243.167 kb on + strandat 1243.167 kb on + strandat 1243.212 kb on + strandat 1243.495 kb on + strand, within PS417_05525at 1243.496 kb on - strand, within PS417_05525at 1243.502 kb on - strand, within PS417_05525at 1244.105 kb on - strand, within PS417_05525

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol (C)
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1,240,609 + PS417_05515 0.26 +0.3
1,240,842 - PS417_05515 0.46 +0.6
1,240,873 + PS417_05515 0.49 -0.1
1,240,873 + PS417_05515 0.49 +0.0
1,240,874 - PS417_05515 0.49 -0.3
1,240,874 - PS417_05515 0.49 +0.2
1,240,874 - PS417_05515 0.49 +0.6
1,240,874 - PS417_05515 0.49 +0.7
1,240,874 - PS417_05515 0.49 -0.1
1,240,874 - PS417_05515 0.49 +0.5
1,241,099 - PS417_05515 0.69 -0.0
1,241,201 - PS417_05515 0.78 +0.7
1,241,201 - PS417_05515 0.78 -0.3
1,241,244 + PS417_05515 0.82 +0.1
1,241,244 + PS417_05515 0.82 +1.0
1,241,245 - PS417_05515 0.82 +0.7
1,241,245 - PS417_05515 0.82 +0.5
1,241,245 - PS417_05515 0.82 +0.3
1,241,257 - PS417_05515 0.83 -0.0
1,241,266 + PS417_05515 0.84 -0.1
1,241,266 + PS417_05515 0.84 -1.0
1,241,266 + PS417_05515 0.84 -0.2
1,241,267 - +0.5
1,241,296 - PS417_05515 0.87 +0.2
1,241,296 - PS417_05515 0.87 +0.8
1,241,301 - PS417_05515 0.87 -0.8
1,241,301 - PS417_05515 0.87 +0.0
1,241,301 - PS417_05515 0.87 +0.3
1,241,382 - -0.1
1,241,684 + PS417_05520 0.14 -0.2
1,241,685 - PS417_05520 0.14 +0.4
1,241,976 + PS417_05520 0.30 -0.3
1,242,036 + PS417_05520 0.33 -0.5
1,242,036 + PS417_05520 0.33 -1.1
1,242,183 + PS417_05520 0.42 +0.1
1,242,184 - PS417_05520 0.42 -1.0
1,242,184 - PS417_05520 0.42 -0.3
1,242,184 - PS417_05520 0.42 -0.2
1,242,461 + PS417_05520 0.57 -0.1
1,242,473 + PS417_05520 0.58 +0.4
1,242,474 - PS417_05520 0.58 +0.2
1,242,474 - PS417_05520 0.58 +0.3
1,242,748 + PS417_05520 0.74 +0.2
1,242,749 - PS417_05520 0.74 +0.4
1,242,749 - PS417_05520 0.74 -0.1
1,242,815 + PS417_05520 0.77 +0.1
1,242,815 + PS417_05520 0.77 -0.2
1,242,815 + PS417_05520 0.77 -0.1
1,242,816 - PS417_05520 0.77 -0.4
1,242,816 - PS417_05520 0.77 +0.1
1,242,818 + PS417_05520 0.78 +0.2
1,242,861 + PS417_05520 0.80 +0.7
1,243,167 + -0.2
1,243,167 + -0.3
1,243,167 + +0.4
1,243,212 + +0.3
1,243,495 + PS417_05525 0.21 +0.3
1,243,496 - PS417_05525 0.21 -0.0
1,243,502 - PS417_05525 0.21 +0.4
1,244,105 - PS417_05525 0.64 +0.6

Or see this region's nucleotide sequence