Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_4021 and Echvi_4022 are separated by 9 nucleotides Echvi_4022 and Echvi_4023 are separated by 15 nucleotides Echvi_4023 and Echvi_4024 are separated by 9 nucleotides
Echvi_4021: Echvi_4021 - Cytochrome c peroxidase, at 4,815,556 to 4,816,680
_4021
Echvi_4022: Echvi_4022 - hypothetical protein, at 4,816,690 to 4,817,430
_4022
Echvi_4023: Echvi_4023 - Cytochrome c peroxidase, at 4,817,446 to 4,818,507
_4023
Echvi_4024: Echvi_4024 - hypothetical protein, at 4,818,517 to 4,819,608
_4024
Position (kb)
4817
4818
4819 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4816.486 kb on + strand, within Echvi_4021 at 4816.580 kb on - strand at 4816.911 kb on + strand, within Echvi_4022 at 4816.912 kb on - strand, within Echvi_4022 at 4816.946 kb on - strand, within Echvi_4022 at 4816.946 kb on - strand, within Echvi_4022 at 4817.116 kb on + strand, within Echvi_4022 at 4817.175 kb on + strand, within Echvi_4022 at 4817.194 kb on - strand, within Echvi_4022 at 4817.401 kb on + strand at 4817.464 kb on + strand at 4817.472 kb on + strand at 4817.656 kb on + strand, within Echvi_4023 at 4817.656 kb on + strand, within Echvi_4023 at 4817.657 kb on - strand, within Echvi_4023 at 4817.657 kb on - strand, within Echvi_4023 at 4817.695 kb on - strand, within Echvi_4023 at 4817.939 kb on - strand, within Echvi_4023 at 4818.110 kb on - strand, within Echvi_4023 at 4818.202 kb on + strand, within Echvi_4023 at 4818.271 kb on - strand, within Echvi_4023 at 4818.271 kb on - strand, within Echvi_4023 at 4818.310 kb on + strand, within Echvi_4023 at 4818.310 kb on + strand, within Echvi_4023 at 4818.311 kb on - strand, within Echvi_4023 at 4818.311 kb on - strand, within Echvi_4023 at 4818.311 kb on - strand, within Echvi_4023 at 4818.312 kb on + strand, within Echvi_4023 at 4818.312 kb on + strand, within Echvi_4023 at 4818.313 kb on - strand, within Echvi_4023 at 4818.372 kb on - strand, within Echvi_4023 at 4818.487 kb on - strand at 4818.489 kb on + strand at 4818.489 kb on + strand at 4818.506 kb on - strand at 4818.506 kb on - strand at 4818.530 kb on + strand at 4818.540 kb on - strand at 4818.635 kb on - strand, within Echvi_4024 at 4818.635 kb on - strand, within Echvi_4024 at 4818.688 kb on + strand, within Echvi_4024 at 4818.850 kb on + strand, within Echvi_4024 at 4818.851 kb on - strand, within Echvi_4024 at 4818.884 kb on - strand, within Echvi_4024 at 4819.076 kb on - strand, within Echvi_4024 at 4819.237 kb on + strand, within Echvi_4024 at 4819.253 kb on + strand, within Echvi_4024 at 4819.317 kb on + strand, within Echvi_4024 at 4819.317 kb on + strand, within Echvi_4024 at 4819.318 kb on - strand, within Echvi_4024 at 4819.321 kb on - strand, within Echvi_4024 at 4819.349 kb on + strand, within Echvi_4024
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 4,816,486 + Echvi_4021 0.83 -0.2 4,816,580 - +0.4 4,816,911 + Echvi_4022 0.30 +0.5 4,816,912 - Echvi_4022 0.30 -1.3 4,816,946 - Echvi_4022 0.35 -0.1 4,816,946 - Echvi_4022 0.35 -1.1 4,817,116 + Echvi_4022 0.57 -0.5 4,817,175 + Echvi_4022 0.65 -1.5 4,817,194 - Echvi_4022 0.68 +0.7 4,817,401 + +1.0 4,817,464 + +2.3 4,817,472 + +0.2 4,817,656 + Echvi_4023 0.20 -1.2 4,817,656 + Echvi_4023 0.20 -0.1 4,817,657 - Echvi_4023 0.20 +0.4 4,817,657 - Echvi_4023 0.20 -2.2 4,817,695 - Echvi_4023 0.23 +1.0 4,817,939 - Echvi_4023 0.46 -2.8 4,818,110 - Echvi_4023 0.63 +0.3 4,818,202 + Echvi_4023 0.71 +0.3 4,818,271 - Echvi_4023 0.78 +0.1 4,818,271 - Echvi_4023 0.78 -1.9 4,818,310 + Echvi_4023 0.81 -2.8 4,818,310 + Echvi_4023 0.81 -2.4 4,818,311 - Echvi_4023 0.81 -0.6 4,818,311 - Echvi_4023 0.81 +0.1 4,818,311 - Echvi_4023 0.81 +0.1 4,818,312 + Echvi_4023 0.82 -2.1 4,818,312 + Echvi_4023 0.82 -1.3 4,818,313 - Echvi_4023 0.82 -0.3 4,818,372 - Echvi_4023 0.87 +2.7 4,818,487 - +0.9 4,818,489 + -0.3 4,818,489 + -0.2 4,818,506 - -0.3 4,818,506 - +0.5 4,818,530 + +1.2 4,818,540 - -0.7 4,818,635 - Echvi_4024 0.11 +0.9 4,818,635 - Echvi_4024 0.11 +2.3 4,818,688 + Echvi_4024 0.16 -0.9 4,818,850 + Echvi_4024 0.30 +1.1 4,818,851 - Echvi_4024 0.31 +1.1 4,818,884 - Echvi_4024 0.34 +0.1 4,819,076 - Echvi_4024 0.51 +0.6 4,819,237 + Echvi_4024 0.66 +0.7 4,819,253 + Echvi_4024 0.67 -0.8 4,819,317 + Echvi_4024 0.73 -1.1 4,819,317 + Echvi_4024 0.73 -0.3 4,819,318 - Echvi_4024 0.73 -1.1 4,819,321 - Echvi_4024 0.74 +0.4 4,819,349 + Echvi_4024 0.76 -1.0
Or see this region's nucleotide sequence