Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_1815 and Echvi_1816 are separated by 212 nucleotides Echvi_1816 and Echvi_1817 are separated by 6 nucleotides Echvi_1817 and Echvi_1818 are separated by 4 nucleotides Echvi_1818 and Echvi_1819 are separated by 33 nucleotides
Echvi_1815: Echvi_1815 - Saccharopine dehydrogenase and related proteins, at 2,133,185 to 2,134,531
_1815
Echvi_1816: Echvi_1816 - Cytidine deaminase, at 2,134,744 to 2,135,226
_1816
Echvi_1817: Echvi_1817 - Predicted esterase, at 2,135,233 to 2,135,883
_1817
Echvi_1818: Echvi_1818 - Uncharacterized protein conserved in bacteria, at 2,135,888 to 2,136,664
_1818
Echvi_1819: Echvi_1819 - D-alanyl-D-alanine dipeptidase, at 2,136,698 to 2,137,477
_1819
Position (kb)
2135
2136 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2134.313 kb on + strand, within Echvi_1815 at 2134.330 kb on + strand, within Echvi_1815 at 2134.330 kb on + strand, within Echvi_1815 at 2134.331 kb on - strand, within Echvi_1815 at 2134.331 kb on - strand, within Echvi_1815 at 2134.366 kb on + strand, within Echvi_1815 at 2134.366 kb on + strand, within Echvi_1815 at 2134.366 kb on + strand, within Echvi_1815 at 2134.366 kb on + strand, within Echvi_1815 at 2134.436 kb on + strand at 2134.552 kb on + strand at 2134.553 kb on - strand at 2134.553 kb on - strand at 2134.553 kb on - strand at 2134.571 kb on - strand at 2134.656 kb on + strand at 2134.657 kb on - strand at 2134.661 kb on + strand at 2134.697 kb on + strand at 2134.698 kb on - strand at 2134.744 kb on - strand at 2134.744 kb on - strand at 2134.744 kb on - strand at 2134.769 kb on + strand at 2134.770 kb on - strand at 2134.770 kb on - strand at 2134.772 kb on + strand at 2134.772 kb on + strand at 2134.773 kb on - strand at 2134.781 kb on + strand at 2134.800 kb on + strand, within Echvi_1816 at 2134.855 kb on + strand, within Echvi_1816 at 2134.855 kb on + strand, within Echvi_1816 at 2134.959 kb on - strand, within Echvi_1816 at 2135.107 kb on + strand, within Echvi_1816 at 2135.116 kb on - strand, within Echvi_1816 at 2135.142 kb on - strand, within Echvi_1816 at 2135.195 kb on + strand at 2135.202 kb on + strand at 2135.216 kb on + strand at 2135.216 kb on + strand at 2135.217 kb on - strand at 2135.217 kb on - strand at 2135.217 kb on - strand at 2135.224 kb on + strand at 2135.225 kb on - strand at 2135.236 kb on + strand at 2135.236 kb on + strand at 2135.236 kb on + strand at 2135.237 kb on - strand at 2135.251 kb on + strand at 2135.251 kb on + strand at 2135.251 kb on + strand at 2135.259 kb on + strand at 2135.269 kb on + strand at 2135.269 kb on + strand at 2135.292 kb on - strand at 2135.315 kb on + strand, within Echvi_1817 at 2135.316 kb on - strand, within Echvi_1817 at 2135.339 kb on + strand, within Echvi_1817 at 2135.339 kb on + strand, within Echvi_1817 at 2135.340 kb on - strand, within Echvi_1817 at 2135.340 kb on - strand, within Echvi_1817 at 2135.348 kb on - strand, within Echvi_1817 at 2135.428 kb on - strand, within Echvi_1817 at 2135.494 kb on - strand, within Echvi_1817 at 2135.565 kb on + strand, within Echvi_1817 at 2135.747 kb on + strand, within Echvi_1817 at 2135.835 kb on + strand at 2135.836 kb on - strand at 2135.836 kb on - strand at 2135.836 kb on - strand at 2135.839 kb on + strand at 2135.882 kb on - strand at 2135.931 kb on + strand at 2135.961 kb on + strand at 2135.972 kb on + strand, within Echvi_1818 at 2135.972 kb on + strand, within Echvi_1818 at 2135.973 kb on - strand, within Echvi_1818 at 2135.973 kb on - strand, within Echvi_1818 at 2135.973 kb on - strand, within Echvi_1818 at 2136.012 kb on + strand, within Echvi_1818 at 2136.085 kb on - strand, within Echvi_1818 at 2136.085 kb on - strand, within Echvi_1818 at 2136.144 kb on + strand, within Echvi_1818 at 2136.183 kb on + strand, within Echvi_1818 at 2136.184 kb on - strand, within Echvi_1818 at 2136.271 kb on + strand, within Echvi_1818 at 2136.271 kb on + strand, within Echvi_1818 at 2136.272 kb on - strand, within Echvi_1818 at 2136.273 kb on + strand, within Echvi_1818 at 2136.317 kb on + strand, within Echvi_1818 at 2136.414 kb on + strand, within Echvi_1818 at 2136.430 kb on + strand, within Echvi_1818 at 2136.430 kb on + strand, within Echvi_1818 at 2136.430 kb on + strand, within Echvi_1818 at 2136.431 kb on - strand, within Echvi_1818 at 2136.473 kb on + strand, within Echvi_1818 at 2136.550 kb on + strand, within Echvi_1818 at 2136.616 kb on + strand at 2136.684 kb on - strand at 2136.688 kb on + strand at 2136.689 kb on - strand at 2136.689 kb on - strand at 2136.713 kb on - strand at 2136.797 kb on - strand, within Echvi_1819 at 2136.797 kb on - strand, within Echvi_1819
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 2,134,313 + Echvi_1815 0.84 +0.3 2,134,330 + Echvi_1815 0.85 +0.0 2,134,330 + Echvi_1815 0.85 -0.3 2,134,331 - Echvi_1815 0.85 +0.5 2,134,331 - Echvi_1815 0.85 -0.0 2,134,366 + Echvi_1815 0.88 -0.4 2,134,366 + Echvi_1815 0.88 -1.9 2,134,366 + Echvi_1815 0.88 -1.4 2,134,366 + Echvi_1815 0.88 +0.2 2,134,436 + -0.1 2,134,552 + -0.4 2,134,553 - +0.8 2,134,553 - -0.1 2,134,553 - -0.2 2,134,571 - -0.7 2,134,656 + -0.5 2,134,657 - -0.5 2,134,661 + +0.2 2,134,697 + -0.1 2,134,698 - -0.4 2,134,744 - -1.2 2,134,744 - -1.0 2,134,744 - -0.8 2,134,769 + -0.8 2,134,770 - +0.3 2,134,770 - -0.5 2,134,772 + -0.4 2,134,772 + +0.2 2,134,773 - -0.7 2,134,781 + +1.7 2,134,800 + Echvi_1816 0.12 +0.3 2,134,855 + Echvi_1816 0.23 +0.6 2,134,855 + Echvi_1816 0.23 +0.0 2,134,959 - Echvi_1816 0.45 -0.4 2,135,107 + Echvi_1816 0.75 -0.1 2,135,116 - Echvi_1816 0.77 +0.7 2,135,142 - Echvi_1816 0.82 +0.8 2,135,195 + -1.4 2,135,202 + -2.7 2,135,216 + -0.7 2,135,216 + +1.1 2,135,217 - +0.2 2,135,217 - -0.0 2,135,217 - -2.4 2,135,224 + +0.5 2,135,225 - -0.9 2,135,236 + +0.4 2,135,236 + +1.9 2,135,236 + +0.5 2,135,237 - +0.5 2,135,251 + +1.1 2,135,251 + +0.5 2,135,251 + -1.4 2,135,259 + -0.0 2,135,269 + +0.9 2,135,269 + -0.1 2,135,292 - -0.7 2,135,315 + Echvi_1817 0.13 -1.9 2,135,316 - Echvi_1817 0.13 -1.1 2,135,339 + Echvi_1817 0.16 +0.1 2,135,339 + Echvi_1817 0.16 +0.1 2,135,340 - Echvi_1817 0.16 -2.6 2,135,340 - Echvi_1817 0.16 -1.4 2,135,348 - Echvi_1817 0.18 +0.7 2,135,428 - Echvi_1817 0.30 -0.6 2,135,494 - Echvi_1817 0.40 +0.2 2,135,565 + Echvi_1817 0.51 -1.2 2,135,747 + Echvi_1817 0.79 -0.9 2,135,835 + -0.6 2,135,836 - +1.1 2,135,836 - -1.6 2,135,836 - -0.9 2,135,839 + -0.6 2,135,882 - +0.3 2,135,931 + -0.3 2,135,961 + -1.4 2,135,972 + Echvi_1818 0.11 +0.2 2,135,972 + Echvi_1818 0.11 -0.1 2,135,973 - Echvi_1818 0.11 +0.5 2,135,973 - Echvi_1818 0.11 +0.5 2,135,973 - Echvi_1818 0.11 +0.1 2,136,012 + Echvi_1818 0.16 -1.2 2,136,085 - Echvi_1818 0.25 +0.4 2,136,085 - Echvi_1818 0.25 -0.7 2,136,144 + Echvi_1818 0.33 -0.4 2,136,183 + Echvi_1818 0.38 -1.0 2,136,184 - Echvi_1818 0.38 -0.1 2,136,271 + Echvi_1818 0.49 +0.3 2,136,271 + Echvi_1818 0.49 +1.3 2,136,272 - Echvi_1818 0.49 -0.7 2,136,273 + Echvi_1818 0.50 -0.4 2,136,317 + Echvi_1818 0.55 -0.9 2,136,414 + Echvi_1818 0.68 +1.9 2,136,430 + Echvi_1818 0.70 -0.4 2,136,430 + Echvi_1818 0.70 -1.3 2,136,430 + Echvi_1818 0.70 -1.4 2,136,431 - Echvi_1818 0.70 -1.9 2,136,473 + Echvi_1818 0.75 +0.1 2,136,550 + Echvi_1818 0.85 +1.1 2,136,616 + +0.6 2,136,684 - +1.1 2,136,688 + +1.0 2,136,689 - +1.9 2,136,689 - +0.5 2,136,713 - +0.3 2,136,797 - Echvi_1819 0.13 -0.6 2,136,797 - Echvi_1819 0.13 +1.0
Or see this region's nucleotide sequence