Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1817

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_1815 and Echvi_1816 are separated by 212 nucleotidesEchvi_1816 and Echvi_1817 are separated by 6 nucleotidesEchvi_1817 and Echvi_1818 are separated by 4 nucleotidesEchvi_1818 and Echvi_1819 are separated by 33 nucleotides Echvi_1815: Echvi_1815 - Saccharopine dehydrogenase and related proteins, at 2,133,185 to 2,134,531 _1815 Echvi_1816: Echvi_1816 - Cytidine deaminase, at 2,134,744 to 2,135,226 _1816 Echvi_1817: Echvi_1817 - Predicted esterase, at 2,135,233 to 2,135,883 _1817 Echvi_1818: Echvi_1818 - Uncharacterized protein conserved in bacteria, at 2,135,888 to 2,136,664 _1818 Echvi_1819: Echvi_1819 - D-alanyl-D-alanine dipeptidase, at 2,136,698 to 2,137,477 _1819 Position (kb) 2135 2136Strain fitness (log2 ratio) -2 -1 0 1 2at 2134.313 kb on + strand, within Echvi_1815at 2134.330 kb on + strand, within Echvi_1815at 2134.330 kb on + strand, within Echvi_1815at 2134.331 kb on - strand, within Echvi_1815at 2134.331 kb on - strand, within Echvi_1815at 2134.366 kb on + strand, within Echvi_1815at 2134.366 kb on + strand, within Echvi_1815at 2134.366 kb on + strand, within Echvi_1815at 2134.366 kb on + strand, within Echvi_1815at 2134.436 kb on + strandat 2134.552 kb on + strandat 2134.553 kb on - strandat 2134.553 kb on - strandat 2134.553 kb on - strandat 2134.571 kb on - strandat 2134.656 kb on + strandat 2134.657 kb on - strandat 2134.661 kb on + strandat 2134.697 kb on + strandat 2134.698 kb on - strandat 2134.744 kb on - strandat 2134.744 kb on - strandat 2134.744 kb on - strandat 2134.769 kb on + strandat 2134.770 kb on - strandat 2134.770 kb on - strandat 2134.772 kb on + strandat 2134.772 kb on + strandat 2134.773 kb on - strandat 2134.781 kb on + strandat 2134.800 kb on + strand, within Echvi_1816at 2134.855 kb on + strand, within Echvi_1816at 2134.855 kb on + strand, within Echvi_1816at 2134.959 kb on - strand, within Echvi_1816at 2135.107 kb on + strand, within Echvi_1816at 2135.116 kb on - strand, within Echvi_1816at 2135.142 kb on - strand, within Echvi_1816at 2135.195 kb on + strandat 2135.202 kb on + strandat 2135.216 kb on + strandat 2135.216 kb on + strandat 2135.217 kb on - strandat 2135.217 kb on - strandat 2135.217 kb on - strandat 2135.224 kb on + strandat 2135.225 kb on - strandat 2135.236 kb on + strandat 2135.236 kb on + strandat 2135.236 kb on + strandat 2135.237 kb on - strandat 2135.251 kb on + strandat 2135.251 kb on + strandat 2135.251 kb on + strandat 2135.259 kb on + strandat 2135.269 kb on + strandat 2135.269 kb on + strandat 2135.292 kb on - strandat 2135.315 kb on + strand, within Echvi_1817at 2135.316 kb on - strand, within Echvi_1817at 2135.339 kb on + strand, within Echvi_1817at 2135.339 kb on + strand, within Echvi_1817at 2135.340 kb on - strand, within Echvi_1817at 2135.340 kb on - strand, within Echvi_1817at 2135.348 kb on - strand, within Echvi_1817at 2135.428 kb on - strand, within Echvi_1817at 2135.494 kb on - strand, within Echvi_1817at 2135.565 kb on + strand, within Echvi_1817at 2135.747 kb on + strand, within Echvi_1817at 2135.835 kb on + strandat 2135.836 kb on - strandat 2135.836 kb on - strandat 2135.836 kb on - strandat 2135.839 kb on + strandat 2135.882 kb on - strandat 2135.931 kb on + strandat 2135.961 kb on + strandat 2135.972 kb on + strand, within Echvi_1818at 2135.972 kb on + strand, within Echvi_1818at 2135.973 kb on - strand, within Echvi_1818at 2135.973 kb on - strand, within Echvi_1818at 2135.973 kb on - strand, within Echvi_1818at 2136.012 kb on + strand, within Echvi_1818at 2136.085 kb on - strand, within Echvi_1818at 2136.085 kb on - strand, within Echvi_1818at 2136.144 kb on + strand, within Echvi_1818at 2136.183 kb on + strand, within Echvi_1818at 2136.184 kb on - strand, within Echvi_1818at 2136.271 kb on + strand, within Echvi_1818at 2136.271 kb on + strand, within Echvi_1818at 2136.272 kb on - strand, within Echvi_1818at 2136.273 kb on + strand, within Echvi_1818at 2136.317 kb on + strand, within Echvi_1818at 2136.414 kb on + strand, within Echvi_1818at 2136.430 kb on + strand, within Echvi_1818at 2136.430 kb on + strand, within Echvi_1818at 2136.430 kb on + strand, within Echvi_1818at 2136.431 kb on - strand, within Echvi_1818at 2136.473 kb on + strand, within Echvi_1818at 2136.550 kb on + strand, within Echvi_1818at 2136.616 kb on + strandat 2136.684 kb on - strandat 2136.688 kb on + strandat 2136.689 kb on - strandat 2136.689 kb on - strandat 2136.713 kb on - strandat 2136.797 kb on - strand, within Echvi_1819at 2136.797 kb on - strand, within Echvi_1819

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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2,134,313 + Echvi_1815 0.84 +0.3
2,134,330 + Echvi_1815 0.85 +0.0
2,134,330 + Echvi_1815 0.85 -0.3
2,134,331 - Echvi_1815 0.85 +0.5
2,134,331 - Echvi_1815 0.85 -0.0
2,134,366 + Echvi_1815 0.88 -0.4
2,134,366 + Echvi_1815 0.88 -1.9
2,134,366 + Echvi_1815 0.88 -1.4
2,134,366 + Echvi_1815 0.88 +0.2
2,134,436 + -0.1
2,134,552 + -0.4
2,134,553 - +0.8
2,134,553 - -0.1
2,134,553 - -0.2
2,134,571 - -0.7
2,134,656 + -0.5
2,134,657 - -0.5
2,134,661 + +0.2
2,134,697 + -0.1
2,134,698 - -0.4
2,134,744 - -1.2
2,134,744 - -1.0
2,134,744 - -0.8
2,134,769 + -0.8
2,134,770 - +0.3
2,134,770 - -0.5
2,134,772 + -0.4
2,134,772 + +0.2
2,134,773 - -0.7
2,134,781 + +1.7
2,134,800 + Echvi_1816 0.12 +0.3
2,134,855 + Echvi_1816 0.23 +0.6
2,134,855 + Echvi_1816 0.23 +0.0
2,134,959 - Echvi_1816 0.45 -0.4
2,135,107 + Echvi_1816 0.75 -0.1
2,135,116 - Echvi_1816 0.77 +0.7
2,135,142 - Echvi_1816 0.82 +0.8
2,135,195 + -1.4
2,135,202 + -2.7
2,135,216 + -0.7
2,135,216 + +1.1
2,135,217 - +0.2
2,135,217 - -0.0
2,135,217 - -2.4
2,135,224 + +0.5
2,135,225 - -0.9
2,135,236 + +0.4
2,135,236 + +1.9
2,135,236 + +0.5
2,135,237 - +0.5
2,135,251 + +1.1
2,135,251 + +0.5
2,135,251 + -1.4
2,135,259 + -0.0
2,135,269 + +0.9
2,135,269 + -0.1
2,135,292 - -0.7
2,135,315 + Echvi_1817 0.13 -1.9
2,135,316 - Echvi_1817 0.13 -1.1
2,135,339 + Echvi_1817 0.16 +0.1
2,135,339 + Echvi_1817 0.16 +0.1
2,135,340 - Echvi_1817 0.16 -2.6
2,135,340 - Echvi_1817 0.16 -1.4
2,135,348 - Echvi_1817 0.18 +0.7
2,135,428 - Echvi_1817 0.30 -0.6
2,135,494 - Echvi_1817 0.40 +0.2
2,135,565 + Echvi_1817 0.51 -1.2
2,135,747 + Echvi_1817 0.79 -0.9
2,135,835 + -0.6
2,135,836 - +1.1
2,135,836 - -1.6
2,135,836 - -0.9
2,135,839 + -0.6
2,135,882 - +0.3
2,135,931 + -0.3
2,135,961 + -1.4
2,135,972 + Echvi_1818 0.11 +0.2
2,135,972 + Echvi_1818 0.11 -0.1
2,135,973 - Echvi_1818 0.11 +0.5
2,135,973 - Echvi_1818 0.11 +0.5
2,135,973 - Echvi_1818 0.11 +0.1
2,136,012 + Echvi_1818 0.16 -1.2
2,136,085 - Echvi_1818 0.25 +0.4
2,136,085 - Echvi_1818 0.25 -0.7
2,136,144 + Echvi_1818 0.33 -0.4
2,136,183 + Echvi_1818 0.38 -1.0
2,136,184 - Echvi_1818 0.38 -0.1
2,136,271 + Echvi_1818 0.49 +0.3
2,136,271 + Echvi_1818 0.49 +1.3
2,136,272 - Echvi_1818 0.49 -0.7
2,136,273 + Echvi_1818 0.50 -0.4
2,136,317 + Echvi_1818 0.55 -0.9
2,136,414 + Echvi_1818 0.68 +1.9
2,136,430 + Echvi_1818 0.70 -0.4
2,136,430 + Echvi_1818 0.70 -1.3
2,136,430 + Echvi_1818 0.70 -1.4
2,136,431 - Echvi_1818 0.70 -1.9
2,136,473 + Echvi_1818 0.75 +0.1
2,136,550 + Echvi_1818 0.85 +1.1
2,136,616 + +0.6
2,136,684 - +1.1
2,136,688 + +1.0
2,136,689 - +1.9
2,136,689 - +0.5
2,136,713 - +0.3
2,136,797 - Echvi_1819 0.13 -0.6
2,136,797 - Echvi_1819 0.13 +1.0

Or see this region's nucleotide sequence