Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1105

Experiment: marine broth

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	marine broth
1,267,077	+		Echvi_1104	0.78	-0.1
1,267,078	-		Echvi_1104	0.79	-0.2
1,267,078	-		Echvi_1104	0.79	+1.4
1,267,078	-		Echvi_1104	0.79	-0.2
1,267,098	-		Echvi_1104	0.79	-2.5
1,267,180	+		Echvi_1104	0.83	-0.0
1,267,181	-		Echvi_1104	0.83	-0.9
1,267,181	-		Echvi_1104	0.83	-0.2
1,267,317	+		Echvi_1104	0.89	+0.2
1,267,340	+				-0.0
1,267,340	+				-0.6
1,267,347	+				-2.3
1,267,347	+				-1.0
1,267,347	+				+0.0
1,267,348	-				-0.4
1,267,429	-				-0.6
1,267,525	+				-0.5
1,267,525	+				-0.3
1,267,540	+				-0.3
1,267,541	-				-0.1
1,267,541	-				+0.5
1,267,547	+				+0.6
1,267,548	-				-0.4
1,267,563	+				+0.4
1,267,563	+				-0.3
1,267,564	-				+1.6
1,267,564	-				-0.9
1,267,575	+				+0.3
1,267,583	+				-0.4
1,267,584	-				+0.5
1,267,584	-				+0.4
1,267,602	+				+1.4
1,267,635	+				-0.7
1,267,635	+				-1.1
1,267,649	+				-0.4
1,267,649	+				-1.0
1,267,650	-				-0.3
1,267,650	-				+0.1
1,267,706	-				+0.6
1,267,718	+				+1.1
1,267,718	+				-0.8
1,267,766	+				-0.3
1,267,798	+				-0.8
1,267,798	+				-0.6
1,267,798	+				-1.1
1,267,799	-				-1.0
1,267,799	-				-0.8
1,267,827	+				-0.0
1,267,827	+				-0.4
1,267,836	+				-0.2
1,267,837	-				-0.0
1,267,837	-				+1.7
1,267,842	+				-0.7
1,267,843	-				+1.3
1,267,861	+				-2.1
1,267,878	+				-1.5
1,267,901	+				-0.2
1,267,903	+				-1.1
1,267,904	-				+0.2
1,267,915	+				-1.3
1,267,915	+				+0.8
1,267,915	+				+0.6
1,267,916	-				+0.0
1,267,971	+				-0.5
1,267,980	+				+0.8
1,267,980	+				+0.3
1,267,981	-				-0.0
1,267,982	+				-1.0
1,267,992	+				+0.6
1,267,992	+				-1.8
1,267,993	-				-0.1
1,267,993	-				-0.7
1,268,089	+				-0.0
1,268,089	+				-0.0
1,268,115	+		Echvi_1105	0.10	-0.4
1,268,115	+		Echvi_1105	0.10	+0.5
1,268,115	+		Echvi_1105	0.10	-1.7
1,268,116	-		Echvi_1105	0.10	-0.2
1,268,127	+		Echvi_1105	0.11	+1.1
1,268,127	+		Echvi_1105	0.11	-0.4
1,268,228	+		Echvi_1105	0.20	-0.3
1,268,343	+		Echvi_1105	0.30	-0.3
1,268,343	+		Echvi_1105	0.30	+0.6
1,268,343	+		Echvi_1105	0.30	-0.4
1,268,344	-		Echvi_1105	0.30	-1.6
1,268,442	+		Echvi_1105	0.38	-0.1
1,268,442	+		Echvi_1105	0.38	-0.6
1,268,442	+		Echvi_1105	0.38	+0.9
1,268,442	+		Echvi_1105	0.38	-0.8
1,268,443	-		Echvi_1105	0.38	+0.1
1,268,449	+		Echvi_1105	0.39	+0.1
1,268,449	+		Echvi_1105	0.39	+0.9
1,268,449	+		Echvi_1105	0.39	+0.3
1,268,449	+		Echvi_1105	0.39	+1.4
1,268,450	-		Echvi_1105	0.39	+0.5
1,268,647	-		Echvi_1105	0.56	+0.3
1,268,699	+		Echvi_1105	0.60	+2.0
1,268,699	+		Echvi_1105	0.60	+2.0
1,268,700	-		Echvi_1105	0.60	+0.7
1,268,713	+		Echvi_1105	0.62	+1.2
1,268,730	+		Echvi_1105	0.63	-0.1
1,268,730	+		Echvi_1105	0.63	-0.9
1,268,730	+		Echvi_1105	0.63	+3.5
1,268,731	-		Echvi_1105	0.63	+0.7
1,268,731	-		Echvi_1105	0.63	-0.1
1,268,736	+		Echvi_1105	0.64	-0.8
1,268,742	+		Echvi_1105	0.64	-0.5
1,268,742	+		Echvi_1105	0.64	-0.4
1,268,743	-		Echvi_1105	0.64	+0.2
1,268,743	-		Echvi_1105	0.64	+1.5
1,268,743	-		Echvi_1105	0.64	-0.1
1,268,771	+		Echvi_1105	0.67	-0.1
1,268,771	+		Echvi_1105	0.67	-0.0
1,268,773	+		Echvi_1105	0.67	-0.2
1,268,773	+		Echvi_1105	0.67	+0.4
1,268,858	-		Echvi_1105	0.74	+1.4
1,268,865	+		Echvi_1105	0.75	-0.0
1,268,928	+		Echvi_1105	0.80	+0.3
1,268,928	+		Echvi_1105	0.80	+1.1
1,268,928	+		Echvi_1105	0.80	-0.0
1,268,929	-		Echvi_1105	0.80	-0.0
1,269,120	+				+1.1
1,269,120	+				+2.0
1,269,121	-				+2.0
1,269,121	-				+0.8
1,269,129	-				-0.3
1,269,140	+				+0.3
1,269,141	-				-0.4
1,269,141	-				-1.0
1,269,159	+				-1.8
1,269,175	+				-1.0
1,269,212	+				-0.5
1,269,213	-				+0.8
1,269,213	-				+0.6
1,269,213	-				+0.6
1,269,216	+				-1.8
1,269,216	+				-1.2
1,269,216	+				+0.9
1,269,216	+				+0.5
1,269,216	+				-0.6
1,269,216	+				-0.3
1,269,216	+				+2.2
1,269,216	+				-0.5
1,269,216	+				-0.4
1,269,216	+				-2.3
1,269,216	+				-0.1
1,269,216	+				+1.5
1,269,216	+				-0.1
1,269,217	-				+0.4
1,269,217	-				-0.8
1,269,217	-				-0.9
1,269,270	+				+2.3
1,269,271	-				-1.0
1,269,271	-				+1.5
1,269,292	+				+0.3
1,269,322	+				-0.4
1,269,323	-				+2.2
1,269,325	+				+0.5
1,269,325	+				-0.8
1,269,325	+				+0.4
1,269,326	-				+1.1
1,269,374	+				-0.4
1,269,375	-				-0.3
1,269,375	-				+0.1
1,269,437	+		Echvi_1106	0.12	-1.0
1,269,482	+		Echvi_1106	0.16	+0.3
1,269,547	-		Echvi_1106	0.22	-0.0
1,269,550	+		Echvi_1106	0.22	-0.0
1,269,550	+		Echvi_1106	0.22	-0.6
1,269,590	+		Echvi_1106	0.25	+0.4
1,269,590	+		Echvi_1106	0.25	-0.3
1,269,590	+		Echvi_1106	0.25	-0.0
1,269,590	+		Echvi_1106	0.25	-0.0
1,269,590	+		Echvi_1106	0.25	+0.7
1,269,591	-		Echvi_1106	0.25	-0.2
1,269,591	-		Echvi_1106	0.25	-0.6
1,269,591	-		Echvi_1106	0.25	+0.3
1,269,591	-		Echvi_1106	0.25	+0.6
1,269,591	-		Echvi_1106	0.25	+0.4
1,269,639	+		Echvi_1106	0.30	+0.2
1,269,639	+		Echvi_1106	0.30	-2.8
1,269,639	+		Echvi_1106	0.30	-0.5
1,269,639	+		Echvi_1106	0.30	+1.0
1,269,639	+		Echvi_1106	0.30	-0.1
1,269,639	+		Echvi_1106	0.30	+1.0
1,269,639	+		Echvi_1106	0.30	+0.6
1,269,639	+		Echvi_1106	0.30	-0.3
1,269,640	-		Echvi_1106	0.30	+1.0
1,269,640	-		Echvi_1106	0.30	+0.4
1,269,640	-		Echvi_1106	0.30	-1.0
1,269,885	-		Echvi_1106	0.52	-0.2
1,269,897	-		Echvi_1106	0.53	-1.2
1,269,941	+		Echvi_1106	0.57	+1.1
1,269,941	+		Echvi_1106	0.57	-0.3
1,269,941	+		Echvi_1106	0.57	-0.3
1,269,942	-		Echvi_1106	0.57	-0.5
1,269,959	-		Echvi_1106	0.59	-2.5
1,269,972	-		Echvi_1106	0.60	-0.7
1,270,007	+		Echvi_1106	0.63	+0.6
1,270,008	-		Echvi_1106	0.63	-1.0
1,270,008	-		Echvi_1106	0.63	+0.4
1,270,029	+		Echvi_1106	0.65	+0.4
1,270,030	-		Echvi_1106	0.65	-0.8
1,270,035	+		Echvi_1106	0.65	+0.1
1,270,035	+		Echvi_1106	0.65	-0.4
1,270,036	-		Echvi_1106	0.66	-1.2
1,270,036	-		Echvi_1106	0.66	-0.2
1,270,052	-		Echvi_1106	0.67	-1.4
1,270,052	-		Echvi_1106	0.67	+0.4
1,270,057	-		Echvi_1106	0.67	+0.1
1,270,057	-		Echvi_1106	0.67	-0.3
1,270,149	-		Echvi_1106	0.76	-1.2