Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0460

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0459 and Echvi_0460 are separated by 94 nucleotidesEchvi_0460 and Echvi_0461 are separated by 14 nucleotidesEchvi_0461 and Echvi_0462 are separated by 582 nucleotides Echvi_0459: Echvi_0459 - Fic/DOC family., at 502,879 to 503,850 _0459 Echvi_0460: Echvi_0460 - hypothetical protein, at 503,945 to 504,829 _0460 Echvi_0461: Echvi_0461 - Site-specific recombinase XerD, at 504,844 to 505,023 _0461 Echvi_0462: Echvi_0462 - hypothetical protein, at 505,606 to 505,863 _0462 Position (kb) 503 504 505Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 503.068 kb on - strand, within Echvi_0459at 503.265 kb on - strand, within Echvi_0459at 503.286 kb on + strand, within Echvi_0459at 503.286 kb on + strand, within Echvi_0459at 503.334 kb on - strand, within Echvi_0459at 504.094 kb on + strand, within Echvi_0460at 504.503 kb on + strand, within Echvi_0460at 504.530 kb on + strand, within Echvi_0460at 504.532 kb on + strand, within Echvi_0460at 504.532 kb on + strand, within Echvi_0460at 504.532 kb on + strand, within Echvi_0460at 504.533 kb on - strand, within Echvi_0460at 504.573 kb on - strand, within Echvi_0460at 504.573 kb on - strand, within Echvi_0460at 504.575 kb on - strand, within Echvi_0460at 505.012 kb on + strandat 505.012 kb on + strandat 505.034 kb on + strandat 505.034 kb on + strandat 505.035 kb on - strandat 505.039 kb on + strandat 505.040 kb on - strandat 505.040 kb on - strandat 505.203 kb on + strandat 505.246 kb on - strandat 505.255 kb on + strandat 505.256 kb on - strandat 505.285 kb on + strandat 505.285 kb on + strandat 505.285 kb on + strandat 505.285 kb on + strandat 505.286 kb on - strandat 505.286 kb on - strandat 505.300 kb on + strandat 505.306 kb on - strandat 505.306 kb on - strandat 505.306 kb on - strandat 505.307 kb on + strandat 505.308 kb on - strandat 505.308 kb on - strandat 505.310 kb on + strandat 505.311 kb on - strandat 505.318 kb on + strandat 505.318 kb on + strandat 505.318 kb on + strandat 505.318 kb on + strandat 505.318 kb on + strandat 505.318 kb on + strandat 505.319 kb on - strandat 505.319 kb on - strandat 505.319 kb on - strandat 505.319 kb on - strandat 505.319 kb on - strandat 505.358 kb on - strandat 505.358 kb on - strandat 505.360 kb on + strandat 505.361 kb on - strandat 505.362 kb on + strandat 505.385 kb on - strandat 505.433 kb on + strandat 505.434 kb on - strandat 505.434 kb on - strandat 505.443 kb on + strandat 505.444 kb on - strandat 505.446 kb on - strandat 505.449 kb on + strandat 505.450 kb on - strandat 505.452 kb on + strandat 505.494 kb on - strandat 505.495 kb on + strandat 505.495 kb on + strandat 505.496 kb on - strandat 505.508 kb on + strandat 505.509 kb on - strandat 505.517 kb on + strandat 505.559 kb on + strandat 505.559 kb on + strandat 505.559 kb on + strandat 505.560 kb on - strandat 505.583 kb on - strandat 505.583 kb on - strandat 505.674 kb on + strand, within Echvi_0462at 505.674 kb on + strand, within Echvi_0462at 505.674 kb on + strand, within Echvi_0462at 505.674 kb on + strand, within Echvi_0462at 505.674 kb on + strand, within Echvi_0462at 505.674 kb on + strand, within Echvi_0462at 505.674 kb on + strand, within Echvi_0462at 505.674 kb on + strand, within Echvi_0462at 505.674 kb on + strand, within Echvi_0462at 505.674 kb on + strand, within Echvi_0462at 505.675 kb on - strand, within Echvi_0462at 505.675 kb on - strand, within Echvi_0462at 505.677 kb on - strand, within Echvi_0462at 505.681 kb on + strand, within Echvi_0462at 505.681 kb on + strand, within Echvi_0462at 505.681 kb on + strand, within Echvi_0462at 505.681 kb on + strand, within Echvi_0462at 505.681 kb on + strand, within Echvi_0462at 505.681 kb on + strand, within Echvi_0462at 505.681 kb on + strand, within Echvi_0462at 505.681 kb on + strand, within Echvi_0462at 505.681 kb on + strand, within Echvi_0462at 505.682 kb on - strand, within Echvi_0462at 505.682 kb on - strand, within Echvi_0462at 505.682 kb on - strand, within Echvi_0462at 505.684 kb on - strand, within Echvi_0462at 505.720 kb on + strand, within Echvi_0462at 505.720 kb on + strand, within Echvi_0462at 505.721 kb on - strand, within Echvi_0462at 505.732 kb on + strand, within Echvi_0462at 505.741 kb on - strand, within Echvi_0462at 505.780 kb on + strand, within Echvi_0462at 505.782 kb on + strand, within Echvi_0462at 505.783 kb on - strand, within Echvi_0462at 505.794 kb on + strand, within Echvi_0462at 505.794 kb on + strand, within Echvi_0462at 505.794 kb on + strand, within Echvi_0462at 505.803 kb on + strand, within Echvi_0462at 505.804 kb on - strand, within Echvi_0462

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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503,068 - Echvi_0459 0.19 -0.6
503,265 - Echvi_0459 0.40 -0.9
503,286 + Echvi_0459 0.42 +0.6
503,286 + Echvi_0459 0.42 -0.6
503,334 - Echvi_0459 0.47 -0.1
504,094 + Echvi_0460 0.17 -0.3
504,503 + Echvi_0460 0.63 +2.2
504,530 + Echvi_0460 0.66 -1.5
504,532 + Echvi_0460 0.66 -0.1
504,532 + Echvi_0460 0.66 -1.1
504,532 + Echvi_0460 0.66 -0.9
504,533 - Echvi_0460 0.66 +0.6
504,573 - Echvi_0460 0.71 -0.0
504,573 - Echvi_0460 0.71 -0.4
504,575 - Echvi_0460 0.71 -1.2
505,012 + -0.7
505,012 + -2.3
505,034 + +0.5
505,034 + +0.1
505,035 - +0.2
505,039 + -0.2
505,040 - +0.2
505,040 - -0.9
505,203 + +0.4
505,246 - -1.7
505,255 + -0.4
505,256 - -1.1
505,285 + +0.5
505,285 + +0.2
505,285 + +0.0
505,285 + +0.6
505,286 - +0.2
505,286 - +0.7
505,300 + +0.2
505,306 - -2.5
505,306 - +0.6
505,306 - -2.3
505,307 + +0.6
505,308 - +0.1
505,308 - +1.2
505,310 + +0.1
505,311 - +0.1
505,318 + -0.1
505,318 + +0.2
505,318 + +0.0
505,318 + -2.1
505,318 + -0.1
505,318 + +0.2
505,319 - -0.6
505,319 - +0.7
505,319 - -0.3
505,319 - -0.9
505,319 - -0.6
505,358 - -0.1
505,358 - -1.4
505,360 + -0.9
505,361 - +0.3
505,362 + +0.4
505,385 - +0.4
505,433 + -0.0
505,434 - +0.3
505,434 - +0.1
505,443 + +0.3
505,444 - +0.9
505,446 - -2.5
505,449 + +0.8
505,450 - -1.2
505,452 + +1.2
505,494 - -2.2
505,495 + -0.1
505,495 + -0.3
505,496 - +0.3
505,508 + -0.0
505,509 - +0.4
505,517 + -0.2
505,559 + +0.2
505,559 + -0.1
505,559 + -0.0
505,560 - +0.0
505,583 - -1.1
505,583 - +0.2
505,674 + Echvi_0462 0.26 -2.2
505,674 + Echvi_0462 0.26 -0.4
505,674 + Echvi_0462 0.26 +0.7
505,674 + Echvi_0462 0.26 +1.1
505,674 + Echvi_0462 0.26 -0.4
505,674 + Echvi_0462 0.26 -1.2
505,674 + Echvi_0462 0.26 +0.2
505,674 + Echvi_0462 0.26 +0.1
505,674 + Echvi_0462 0.26 +0.1
505,674 + Echvi_0462 0.26 +0.9
505,675 - Echvi_0462 0.27 +0.0
505,675 - Echvi_0462 0.27 -2.1
505,677 - Echvi_0462 0.28 -0.8
505,681 + Echvi_0462 0.29 +0.3
505,681 + Echvi_0462 0.29 -0.2
505,681 + Echvi_0462 0.29 +0.7
505,681 + Echvi_0462 0.29 +1.9
505,681 + Echvi_0462 0.29 -0.0
505,681 + Echvi_0462 0.29 +0.1
505,681 + Echvi_0462 0.29 -0.7
505,681 + Echvi_0462 0.29 +0.2
505,681 + Echvi_0462 0.29 +0.3
505,682 - Echvi_0462 0.29 +0.4
505,682 - Echvi_0462 0.29 -0.0
505,682 - Echvi_0462 0.29 -0.5
505,684 - Echvi_0462 0.30 +0.2
505,720 + Echvi_0462 0.44 -1.2
505,720 + Echvi_0462 0.44 -0.4
505,721 - Echvi_0462 0.45 -1.9
505,732 + Echvi_0462 0.49 +0.1
505,741 - Echvi_0462 0.52 -0.9
505,780 + Echvi_0462 0.67 -2.4
505,782 + Echvi_0462 0.68 +0.3
505,783 - Echvi_0462 0.69 -3.1
505,794 + Echvi_0462 0.73 -0.3
505,794 + Echvi_0462 0.73 -1.5
505,794 + Echvi_0462 0.73 -1.5
505,803 + Echvi_0462 0.76 -1.6
505,804 - Echvi_0462 0.77 +1.4

Or see this region's nucleotide sequence