Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0447 and Echvi_0448 are separated by 14 nucleotides Echvi_0448 and Echvi_0449 are separated by 106 nucleotides Echvi_0449 and Echvi_0450 are separated by 80 nucleotides Echvi_0450 and Echvi_0451 are separated by 120 nucleotides
Echvi_0447: Echvi_0447 - hypothetical protein, at 490,376 to 491,695
_0447
Echvi_0448: Echvi_0448 - hypothetical protein, at 491,710 to 492,255
_0448
Echvi_0449: Echvi_0449 - hypothetical protein, at 492,362 to 493,480
_0449
Echvi_0450: Echvi_0450 - hypothetical protein, at 493,561 to 494,091
_0450
Echvi_0451: Echvi_0451 - hypothetical protein, at 494,212 to 495,504
_0451
Position (kb) 492
493
494 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 491.380 kb on + strand, within Echvi_0447 at 491.380 kb on + strand, within Echvi_0447 at 491.381 kb on - strand, within Echvi_0447 at 491.473 kb on + strand, within Echvi_0447 at 491.473 kb on + strand, within Echvi_0447 at 491.487 kb on + strand, within Echvi_0447 at 491.487 kb on + strand, within Echvi_0447 at 491.488 kb on - strand, within Echvi_0447 at 491.488 kb on - strand, within Echvi_0447 at 491.491 kb on + strand, within Echvi_0447 at 491.543 kb on - strand, within Echvi_0447 at 491.543 kb on - strand, within Echvi_0447 at 491.561 kb on + strand, within Echvi_0447 at 491.582 kb on - strand at 491.669 kb on + strand at 491.670 kb on - strand at 491.670 kb on - strand at 491.675 kb on - strand at 491.675 kb on - strand at 491.675 kb on - strand at 491.707 kb on - strand at 491.711 kb on + strand at 491.711 kb on + strand at 491.722 kb on + strand at 491.746 kb on + strand at 491.866 kb on - strand, within Echvi_0448 at 491.870 kb on - strand, within Echvi_0448 at 491.870 kb on - strand, within Echvi_0448 at 491.888 kb on + strand, within Echvi_0448 at 491.941 kb on + strand, within Echvi_0448 at 491.942 kb on - strand, within Echvi_0448 at 491.942 kb on - strand, within Echvi_0448 at 491.944 kb on - strand, within Echvi_0448 at 492.069 kb on + strand, within Echvi_0448 at 492.071 kb on + strand, within Echvi_0448 at 492.072 kb on - strand, within Echvi_0448 at 492.129 kb on + strand, within Echvi_0448 at 492.129 kb on + strand, within Echvi_0448 at 492.130 kb on - strand, within Echvi_0448 at 492.137 kb on + strand, within Echvi_0448 at 492.137 kb on + strand, within Echvi_0448 at 492.138 kb on - strand, within Echvi_0448 at 492.138 kb on - strand, within Echvi_0448 at 492.303 kb on + strand at 492.322 kb on + strand at 492.334 kb on + strand at 492.343 kb on + strand at 492.358 kb on - strand at 492.358 kb on - strand at 492.395 kb on + strand at 492.396 kb on - strand at 492.603 kb on - strand, within Echvi_0449 at 492.663 kb on + strand, within Echvi_0449 at 492.667 kb on + strand, within Echvi_0449 at 492.667 kb on + strand, within Echvi_0449 at 492.728 kb on + strand, within Echvi_0449 at 492.795 kb on + strand, within Echvi_0449 at 492.796 kb on - strand, within Echvi_0449 at 492.801 kb on + strand, within Echvi_0449 at 492.969 kb on + strand, within Echvi_0449 at 492.970 kb on - strand, within Echvi_0449 at 492.970 kb on - strand, within Echvi_0449 at 492.970 kb on - strand, within Echvi_0449 at 492.970 kb on - strand, within Echvi_0449 at 493.011 kb on + strand, within Echvi_0449 at 493.011 kb on + strand, within Echvi_0449 at 493.088 kb on + strand, within Echvi_0449 at 493.246 kb on + strand, within Echvi_0449 at 493.247 kb on - strand, within Echvi_0449 at 493.276 kb on + strand, within Echvi_0449 at 493.286 kb on - strand, within Echvi_0449 at 493.432 kb on + strand at 493.432 kb on + strand at 493.433 kb on - strand at 493.433 kb on - strand at 493.435 kb on + strand at 493.435 kb on + strand at 493.436 kb on - strand at 493.437 kb on + strand at 493.438 kb on - strand at 493.451 kb on + strand at 493.451 kb on + strand at 493.451 kb on + strand at 493.452 kb on - strand at 493.452 kb on - strand at 493.475 kb on + strand at 493.476 kb on - strand at 493.487 kb on + strand at 493.487 kb on + strand at 493.487 kb on + strand at 493.487 kb on + strand at 493.488 kb on - strand at 493.490 kb on + strand at 493.491 kb on - strand at 493.527 kb on - strand at 493.550 kb on + strand at 493.563 kb on - strand at 493.661 kb on - strand, within Echvi_0450 at 493.702 kb on - strand, within Echvi_0450 at 493.717 kb on + strand, within Echvi_0450 at 493.718 kb on - strand, within Echvi_0450 at 493.825 kb on - strand, within Echvi_0450 at 493.863 kb on + strand, within Echvi_0450 at 493.919 kb on + strand, within Echvi_0450 at 493.920 kb on - strand, within Echvi_0450 at 493.920 kb on - strand, within Echvi_0450 at 493.920 kb on - strand, within Echvi_0450 at 493.963 kb on + strand, within Echvi_0450 at 493.963 kb on + strand, within Echvi_0450 at 493.964 kb on - strand, within Echvi_0450 at 494.074 kb on + strand at 494.116 kb on + strand at 494.126 kb on + strand at 494.128 kb on + strand at 494.177 kb on - strand at 494.210 kb on + strand at 494.213 kb on + strand at 494.220 kb on + strand at 494.220 kb on + strand at 494.238 kb on - strand at 494.243 kb on - strand at 494.271 kb on + strand at 494.273 kb on + strand at 494.273 kb on + strand at 494.273 kb on + strand at 494.273 kb on + strand at 494.292 kb on + strand at 494.348 kb on + strand, within Echvi_0451 at 494.349 kb on - strand, within Echvi_0451 at 494.407 kb on - strand, within Echvi_0451 at 494.408 kb on + strand, within Echvi_0451 at 494.408 kb on + strand, within Echvi_0451 at 494.408 kb on + strand, within Echvi_0451 at 494.408 kb on + strand, within Echvi_0451 at 494.409 kb on - strand, within Echvi_0451 at 494.409 kb on - strand, within Echvi_0451
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 491,380 + Echvi_0447 0.76 +0.8 491,380 + Echvi_0447 0.76 +1.5 491,381 - Echvi_0447 0.76 -0.2 491,473 + Echvi_0447 0.83 +0.3 491,473 + Echvi_0447 0.83 -0.3 491,487 + Echvi_0447 0.84 -1.1 491,487 + Echvi_0447 0.84 -0.3 491,488 - Echvi_0447 0.84 -0.6 491,488 - Echvi_0447 0.84 -1.2 491,491 + Echvi_0447 0.84 -0.0 491,543 - Echvi_0447 0.88 +0.1 491,543 - Echvi_0447 0.88 -0.2 491,561 + Echvi_0447 0.90 +0.2 491,582 - -0.3 491,669 + +0.6 491,670 - -1.8 491,670 - -0.1 491,675 - +0.8 491,675 - +0.2 491,675 - -0.4 491,707 - -1.7 491,711 + -1.8 491,711 + -0.5 491,722 + -0.7 491,746 + -1.3 491,866 - Echvi_0448 0.29 -0.2 491,870 - Echvi_0448 0.29 -0.7 491,870 - Echvi_0448 0.29 -0.1 491,888 + Echvi_0448 0.33 -0.1 491,941 + Echvi_0448 0.42 -0.3 491,942 - Echvi_0448 0.42 +0.3 491,942 - Echvi_0448 0.42 -0.1 491,944 - Echvi_0448 0.43 +1.3 492,069 + Echvi_0448 0.66 +0.9 492,071 + Echvi_0448 0.66 +0.2 492,072 - Echvi_0448 0.66 -1.6 492,129 + Echvi_0448 0.77 -0.9 492,129 + Echvi_0448 0.77 +0.4 492,130 - Echvi_0448 0.77 -0.5 492,137 + Echvi_0448 0.78 -0.1 492,137 + Echvi_0448 0.78 -0.2 492,138 - Echvi_0448 0.78 -0.3 492,138 - Echvi_0448 0.78 -0.2 492,303 + -1.1 492,322 + +0.9 492,334 + -0.1 492,343 + -0.6 492,358 - +0.5 492,358 - +0.3 492,395 + -0.9 492,396 - -0.9 492,603 - Echvi_0449 0.22 +1.9 492,663 + Echvi_0449 0.27 -1.6 492,667 + Echvi_0449 0.27 -0.7 492,667 + Echvi_0449 0.27 -0.2 492,728 + Echvi_0449 0.33 +0.1 492,795 + Echvi_0449 0.39 -1.0 492,796 - Echvi_0449 0.39 +0.1 492,801 + Echvi_0449 0.39 +1.1 492,969 + Echvi_0449 0.54 -1.3 492,970 - Echvi_0449 0.54 -0.9 492,970 - Echvi_0449 0.54 -1.2 492,970 - Echvi_0449 0.54 +0.9 492,970 - Echvi_0449 0.54 -0.8 493,011 + Echvi_0449 0.58 -0.3 493,011 + Echvi_0449 0.58 +0.5 493,088 + Echvi_0449 0.65 -0.2 493,246 + Echvi_0449 0.79 -1.2 493,247 - Echvi_0449 0.79 -1.6 493,276 + Echvi_0449 0.82 -0.7 493,286 - Echvi_0449 0.83 -1.1 493,432 + -0.1 493,432 + -0.1 493,433 - -1.1 493,433 - +1.0 493,435 + -0.1 493,435 + -2.0 493,436 - -2.0 493,437 + -1.1 493,438 - +0.1 493,451 + -0.4 493,451 + -0.6 493,451 + -2.0 493,452 - +0.3 493,452 - -2.8 493,475 + -1.0 493,476 - +0.0 493,487 + -0.5 493,487 + +1.0 493,487 + -1.1 493,487 + -0.5 493,488 - +0.4 493,490 + -0.6 493,491 - -0.6 493,527 - -0.9 493,550 + +0.3 493,563 - -0.9 493,661 - Echvi_0450 0.19 +3.5 493,702 - Echvi_0450 0.27 +1.6 493,717 + Echvi_0450 0.29 +0.7 493,718 - Echvi_0450 0.30 +0.6 493,825 - Echvi_0450 0.50 +1.2 493,863 + Echvi_0450 0.57 +0.0 493,919 + Echvi_0450 0.67 -0.0 493,920 - Echvi_0450 0.68 -2.3 493,920 - Echvi_0450 0.68 -0.3 493,920 - Echvi_0450 0.68 +0.5 493,963 + Echvi_0450 0.76 -0.1 493,963 + Echvi_0450 0.76 +1.0 493,964 - Echvi_0450 0.76 +0.2 494,074 + +0.1 494,116 + +0.3 494,126 + -0.1 494,128 + -0.1 494,177 - +0.3 494,210 + -0.7 494,213 + +1.4 494,220 + +0.6 494,220 + -1.0 494,238 - +0.1 494,243 - -0.1 494,271 + -2.3 494,273 + -0.9 494,273 + -0.1 494,273 + +0.4 494,273 + +1.3 494,292 + -0.8 494,348 + Echvi_0451 0.11 -0.4 494,349 - Echvi_0451 0.11 -0.4 494,407 - Echvi_0451 0.15 +1.2 494,408 + Echvi_0451 0.15 +0.3 494,408 + Echvi_0451 0.15 +0.5 494,408 + Echvi_0451 0.15 +1.0 494,408 + Echvi_0451 0.15 -0.8 494,409 - Echvi_0451 0.15 +0.0 494,409 - Echvi_0451 0.15 -0.4
Or see this region's nucleotide sequence