Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0362

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0361 and Echvi_0362 are separated by 297 nucleotidesEchvi_0362 and Echvi_0363 are separated by 10 nucleotides Echvi_0361: Echvi_0361 - hypothetical protein, at 388,436 to 389,359 _0361 Echvi_0362: Echvi_0362 - hypothetical protein, at 389,657 to 390,136 _0362 Echvi_0363: Echvi_0363 - Flavodoxin reductases (ferredoxin-NADPH reductases) family 1, at 390,147 to 391,259 _0363 Position (kb) 389 390 391Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 388.742 kb on + strand, within Echvi_0361at 388.742 kb on + strand, within Echvi_0361at 388.742 kb on + strand, within Echvi_0361at 388.742 kb on + strand, within Echvi_0361at 388.742 kb on + strand, within Echvi_0361at 388.742 kb on + strand, within Echvi_0361at 388.742 kb on + strand, within Echvi_0361at 388.743 kb on - strand, within Echvi_0361at 388.746 kb on + strand, within Echvi_0361at 388.747 kb on - strand, within Echvi_0361at 388.747 kb on - strand, within Echvi_0361at 388.747 kb on - strand, within Echvi_0361at 388.754 kb on - strand, within Echvi_0361at 388.820 kb on - strand, within Echvi_0361at 388.840 kb on - strand, within Echvi_0361at 389.049 kb on + strand, within Echvi_0361at 389.050 kb on - strand, within Echvi_0361at 389.054 kb on - strand, within Echvi_0361at 389.101 kb on - strand, within Echvi_0361at 389.131 kb on - strand, within Echvi_0361at 389.170 kb on + strand, within Echvi_0361at 389.222 kb on + strand, within Echvi_0361at 389.223 kb on - strand, within Echvi_0361at 389.223 kb on - strand, within Echvi_0361at 389.224 kb on + strand, within Echvi_0361at 389.224 kb on + strand, within Echvi_0361at 389.224 kb on + strand, within Echvi_0361at 389.224 kb on + strand, within Echvi_0361at 389.225 kb on - strand, within Echvi_0361at 389.225 kb on - strand, within Echvi_0361at 389.312 kb on + strandat 389.314 kb on + strandat 389.314 kb on + strandat 389.315 kb on - strandat 389.315 kb on - strandat 389.315 kb on - strandat 389.315 kb on - strandat 389.358 kb on - strandat 389.388 kb on - strandat 389.418 kb on + strandat 389.465 kb on - strandat 389.564 kb on + strandat 389.575 kb on - strandat 389.685 kb on - strandat 389.695 kb on + strandat 389.695 kb on + strandat 389.708 kb on - strand, within Echvi_0362at 389.717 kb on + strand, within Echvi_0362at 389.828 kb on + strand, within Echvi_0362at 389.942 kb on - strand, within Echvi_0362at 389.952 kb on + strand, within Echvi_0362at 389.952 kb on + strand, within Echvi_0362at 389.953 kb on - strand, within Echvi_0362at 389.966 kb on + strand, within Echvi_0362at 390.046 kb on + strand, within Echvi_0362at 390.107 kb on - strandat 390.155 kb on + strandat 390.179 kb on + strandat 390.179 kb on + strandat 390.184 kb on + strandat 390.206 kb on - strandat 390.206 kb on - strandat 390.313 kb on + strand, within Echvi_0363at 390.482 kb on + strand, within Echvi_0363at 390.482 kb on + strand, within Echvi_0363at 390.484 kb on + strand, within Echvi_0363at 390.485 kb on - strand, within Echvi_0363at 390.485 kb on - strand, within Echvi_0363at 390.541 kb on - strand, within Echvi_0363at 390.577 kb on + strand, within Echvi_0363at 390.580 kb on + strand, within Echvi_0363at 390.580 kb on + strand, within Echvi_0363at 390.581 kb on - strand, within Echvi_0363at 390.781 kb on + strand, within Echvi_0363at 390.781 kb on + strand, within Echvi_0363at 390.827 kb on + strand, within Echvi_0363at 391.034 kb on - strand, within Echvi_0363at 391.043 kb on + strand, within Echvi_0363at 391.047 kb on + strand, within Echvi_0363at 391.047 kb on + strand, within Echvi_0363at 391.047 kb on + strand, within Echvi_0363at 391.047 kb on + strand, within Echvi_0363at 391.047 kb on + strand, within Echvi_0363at 391.047 kb on + strand, within Echvi_0363at 391.047 kb on + strand, within Echvi_0363at 391.047 kb on + strand, within Echvi_0363at 391.048 kb on - strand, within Echvi_0363at 391.048 kb on - strand, within Echvi_0363at 391.048 kb on - strand, within Echvi_0363at 391.115 kb on + strand, within Echvi_0363at 391.118 kb on - strand, within Echvi_0363at 391.127 kb on - strand, within Echvi_0363

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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388,742 + Echvi_0361 0.33 -1.1
388,742 + Echvi_0361 0.33 +1.3
388,742 + Echvi_0361 0.33 -1.1
388,742 + Echvi_0361 0.33 +0.6
388,742 + Echvi_0361 0.33 -1.3
388,742 + Echvi_0361 0.33 -0.3
388,742 + Echvi_0361 0.33 -0.7
388,743 - Echvi_0361 0.33 -0.9
388,746 + Echvi_0361 0.34 -0.8
388,747 - Echvi_0361 0.34 -0.4
388,747 - Echvi_0361 0.34 -0.1
388,747 - Echvi_0361 0.34 -0.9
388,754 - Echvi_0361 0.34 -0.7
388,820 - Echvi_0361 0.42 -1.1
388,840 - Echvi_0361 0.44 +0.1
389,049 + Echvi_0361 0.66 +0.4
389,050 - Echvi_0361 0.66 +1.8
389,054 - Echvi_0361 0.67 -0.5
389,101 - Echvi_0361 0.72 -0.6
389,131 - Echvi_0361 0.75 +0.6
389,170 + Echvi_0361 0.79 -0.1
389,222 + Echvi_0361 0.85 +0.8
389,223 - Echvi_0361 0.85 -1.5
389,223 - Echvi_0361 0.85 +0.3
389,224 + Echvi_0361 0.85 -0.4
389,224 + Echvi_0361 0.85 -2.1
389,224 + Echvi_0361 0.85 +0.1
389,224 + Echvi_0361 0.85 +0.2
389,225 - Echvi_0361 0.85 +0.1
389,225 - Echvi_0361 0.85 -0.1
389,312 + +1.9
389,314 + -1.3
389,314 + -0.5
389,315 - -0.4
389,315 - -0.2
389,315 - +0.1
389,315 - +0.3
389,358 - -1.5
389,388 - +0.1
389,418 + +0.4
389,465 - -2.0
389,564 + +1.3
389,575 - +0.8
389,685 - +0.2
389,695 + +0.3
389,695 + -1.0
389,708 - Echvi_0362 0.11 +1.2
389,717 + Echvi_0362 0.12 -1.5
389,828 + Echvi_0362 0.36 -0.9
389,942 - Echvi_0362 0.59 -0.4
389,952 + Echvi_0362 0.61 -0.1
389,952 + Echvi_0362 0.61 +0.6
389,953 - Echvi_0362 0.62 +0.3
389,966 + Echvi_0362 0.64 -1.9
390,046 + Echvi_0362 0.81 -3.3
390,107 - -0.3
390,155 + -0.5
390,179 + +2.4
390,179 + -1.3
390,184 + -1.3
390,206 - +1.5
390,206 - -0.7
390,313 + Echvi_0363 0.15 -0.2
390,482 + Echvi_0363 0.30 +1.3
390,482 + Echvi_0363 0.30 -1.1
390,484 + Echvi_0363 0.30 -1.3
390,485 - Echvi_0363 0.30 -1.3
390,485 - Echvi_0363 0.30 -0.5
390,541 - Echvi_0363 0.35 -0.1
390,577 + Echvi_0363 0.39 -0.5
390,580 + Echvi_0363 0.39 +0.1
390,580 + Echvi_0363 0.39 -0.8
390,581 - Echvi_0363 0.39 -2.3
390,781 + Echvi_0363 0.57 +0.0
390,781 + Echvi_0363 0.57 -2.0
390,827 + Echvi_0363 0.61 +0.6
391,034 - Echvi_0363 0.80 +2.2
391,043 + Echvi_0363 0.81 -1.5
391,047 + Echvi_0363 0.81 +0.1
391,047 + Echvi_0363 0.81 +0.2
391,047 + Echvi_0363 0.81 -0.7
391,047 + Echvi_0363 0.81 -0.7
391,047 + Echvi_0363 0.81 -0.3
391,047 + Echvi_0363 0.81 +0.7
391,047 + Echvi_0363 0.81 +0.4
391,047 + Echvi_0363 0.81 -1.2
391,048 - Echvi_0363 0.81 +0.9
391,048 - Echvi_0363 0.81 -2.1
391,048 - Echvi_0363 0.81 +0.7
391,115 + Echvi_0363 0.87 -0.3
391,118 - Echvi_0363 0.87 -0.3
391,127 - Echvi_0363 0.88 +0.1

Or see this region's nucleotide sequence