Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0328 and Echvi_0329 are separated by 69 nucleotides Echvi_0329 and Echvi_0330 are separated by 225 nucleotides Echvi_0330 and Echvi_0331 are separated by 281 nucleotides
Echvi_0328: Echvi_0328 - hypothetical protein, at 345,113 to 345,778
_0328
Echvi_0329: Echvi_0329 - hypothetical protein, at 345,848 to 346,051
_0329
Echvi_0330: Echvi_0330 - hypothetical protein, at 346,277 to 347,089
_0330
Echvi_0331: Echvi_0331 - Uncharacterized conserved protein, at 347,371 to 348,957
_0331
Position (kb)
346
347
348 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 345.291 kb on - strand, within Echvi_0328 at 345.303 kb on + strand, within Echvi_0328 at 345.304 kb on - strand, within Echvi_0328 at 345.304 kb on - strand, within Echvi_0328 at 345.368 kb on + strand, within Echvi_0328 at 345.368 kb on + strand, within Echvi_0328 at 345.368 kb on + strand, within Echvi_0328 at 345.368 kb on + strand, within Echvi_0328 at 345.369 kb on - strand, within Echvi_0328 at 345.369 kb on - strand, within Echvi_0328 at 345.408 kb on + strand, within Echvi_0328 at 345.416 kb on + strand, within Echvi_0328 at 345.438 kb on - strand, within Echvi_0328 at 345.476 kb on - strand, within Echvi_0328 at 345.481 kb on + strand, within Echvi_0328 at 345.506 kb on - strand, within Echvi_0328 at 345.632 kb on + strand, within Echvi_0328 at 345.731 kb on - strand at 345.770 kb on + strand at 345.818 kb on + strand at 345.829 kb on + strand at 345.829 kb on + strand at 345.851 kb on + strand at 345.917 kb on + strand, within Echvi_0329 at 345.944 kb on + strand, within Echvi_0329 at 345.945 kb on - strand, within Echvi_0329 at 345.946 kb on + strand, within Echvi_0329 at 345.998 kb on - strand, within Echvi_0329 at 345.999 kb on + strand, within Echvi_0329 at 346.055 kb on + strand at 346.056 kb on - strand at 346.058 kb on + strand at 346.058 kb on + strand at 346.058 kb on + strand at 346.058 kb on + strand at 346.094 kb on - strand at 346.158 kb on + strand at 346.159 kb on - strand at 346.161 kb on + strand at 346.162 kb on - strand at 346.162 kb on - strand at 346.165 kb on - strand at 346.165 kb on - strand at 346.261 kb on - strand at 346.278 kb on + strand at 346.378 kb on - strand, within Echvi_0330 at 346.562 kb on - strand, within Echvi_0330 at 346.606 kb on - strand, within Echvi_0330 at 346.938 kb on + strand, within Echvi_0330 at 346.968 kb on + strand, within Echvi_0330 at 346.968 kb on + strand, within Echvi_0330 at 346.968 kb on + strand, within Echvi_0330 at 346.969 kb on - strand, within Echvi_0330 at 346.969 kb on - strand, within Echvi_0330 at 346.978 kb on + strand, within Echvi_0330 at 346.978 kb on + strand, within Echvi_0330 at 347.072 kb on - strand at 347.075 kb on + strand at 347.185 kb on + strand at 347.186 kb on - strand at 347.204 kb on + strand at 347.271 kb on + strand at 347.276 kb on - strand at 347.276 kb on - strand at 347.276 kb on - strand at 347.287 kb on - strand at 347.294 kb on - strand at 347.308 kb on - strand at 347.355 kb on + strand at 347.356 kb on - strand at 347.365 kb on + strand at 347.532 kb on + strand, within Echvi_0331 at 347.533 kb on - strand, within Echvi_0331 at 347.537 kb on + strand, within Echvi_0331 at 347.538 kb on - strand, within Echvi_0331 at 347.556 kb on - strand, within Echvi_0331 at 347.630 kb on + strand, within Echvi_0331 at 347.631 kb on - strand, within Echvi_0331 at 347.631 kb on - strand, within Echvi_0331 at 347.756 kb on + strand, within Echvi_0331 at 347.855 kb on + strand, within Echvi_0331 at 347.855 kb on + strand, within Echvi_0331 at 347.855 kb on + strand, within Echvi_0331 at 347.856 kb on - strand, within Echvi_0331
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 345,291 - Echvi_0328 0.27 +0.5 345,303 + Echvi_0328 0.29 -0.6 345,304 - Echvi_0328 0.29 +1.1 345,304 - Echvi_0328 0.29 +0.5 345,368 + Echvi_0328 0.38 +0.6 345,368 + Echvi_0328 0.38 -0.3 345,368 + Echvi_0328 0.38 +0.7 345,368 + Echvi_0328 0.38 -0.6 345,369 - Echvi_0328 0.38 -0.4 345,369 - Echvi_0328 0.38 -0.1 345,408 + Echvi_0328 0.44 -1.1 345,416 + Echvi_0328 0.45 +0.3 345,438 - Echvi_0328 0.49 +1.0 345,476 - Echvi_0328 0.55 -1.5 345,481 + Echvi_0328 0.55 +0.4 345,506 - Echvi_0328 0.59 -1.3 345,632 + Echvi_0328 0.78 -1.1 345,731 - -0.3 345,770 + -0.1 345,818 + +0.4 345,829 + -0.1 345,829 + +1.1 345,851 + -0.2 345,917 + Echvi_0329 0.34 -1.0 345,944 + Echvi_0329 0.47 +0.9 345,945 - Echvi_0329 0.48 -1.1 345,946 + Echvi_0329 0.48 -0.3 345,998 - Echvi_0329 0.74 -1.2 345,999 + Echvi_0329 0.74 +0.3 346,055 + +0.4 346,056 - +0.2 346,058 + -0.3 346,058 + +0.4 346,058 + +0.0 346,058 + -0.9 346,094 - -0.6 346,158 + -0.7 346,159 - -0.0 346,161 + +0.7 346,162 - +0.2 346,162 - +1.1 346,165 - -0.0 346,165 - -0.7 346,261 - +1.6 346,278 + -2.5 346,378 - Echvi_0330 0.12 +0.2 346,562 - Echvi_0330 0.35 -0.5 346,606 - Echvi_0330 0.40 -1.1 346,938 + Echvi_0330 0.81 -1.3 346,968 + Echvi_0330 0.85 -0.1 346,968 + Echvi_0330 0.85 +0.3 346,968 + Echvi_0330 0.85 -1.8 346,969 - Echvi_0330 0.85 -0.7 346,969 - Echvi_0330 0.85 -0.5 346,978 + Echvi_0330 0.86 -2.6 346,978 + Echvi_0330 0.86 -0.3 347,072 - -0.5 347,075 + +0.5 347,185 + +0.5 347,186 - -0.7 347,204 + -0.2 347,271 + +0.5 347,276 - -0.7 347,276 - -0.1 347,276 - -0.7 347,287 - -0.7 347,294 - -1.0 347,308 - -0.1 347,355 + -0.5 347,356 - -0.2 347,365 + -0.8 347,532 + Echvi_0331 0.10 -0.2 347,533 - Echvi_0331 0.10 -0.1 347,537 + Echvi_0331 0.10 -0.2 347,538 - Echvi_0331 0.11 +0.3 347,556 - Echvi_0331 0.12 -0.4 347,630 + Echvi_0331 0.16 -1.0 347,631 - Echvi_0331 0.16 -0.1 347,631 - Echvi_0331 0.16 +1.1 347,756 + Echvi_0331 0.24 +0.4 347,855 + Echvi_0331 0.30 -0.5 347,855 + Echvi_0331 0.30 +0.2 347,855 + Echvi_0331 0.30 +1.9 347,856 - Echvi_0331 0.31 -0.4
Or see this region's nucleotide sequence