Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0330

Experiment: marine broth

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_0328 and Echvi_0329 are separated by 69 nucleotidesEchvi_0329 and Echvi_0330 are separated by 225 nucleotidesEchvi_0330 and Echvi_0331 are separated by 281 nucleotides Echvi_0328: Echvi_0328 - hypothetical protein, at 345,113 to 345,778 _0328 Echvi_0329: Echvi_0329 - hypothetical protein, at 345,848 to 346,051 _0329 Echvi_0330: Echvi_0330 - hypothetical protein, at 346,277 to 347,089 _0330 Echvi_0331: Echvi_0331 - Uncharacterized conserved protein, at 347,371 to 348,957 _0331 Position (kb) 346 347 348Strain fitness (log2 ratio) -2 -1 0 1 2at 345.291 kb on - strand, within Echvi_0328at 345.303 kb on + strand, within Echvi_0328at 345.304 kb on - strand, within Echvi_0328at 345.304 kb on - strand, within Echvi_0328at 345.368 kb on + strand, within Echvi_0328at 345.368 kb on + strand, within Echvi_0328at 345.368 kb on + strand, within Echvi_0328at 345.368 kb on + strand, within Echvi_0328at 345.369 kb on - strand, within Echvi_0328at 345.369 kb on - strand, within Echvi_0328at 345.408 kb on + strand, within Echvi_0328at 345.416 kb on + strand, within Echvi_0328at 345.438 kb on - strand, within Echvi_0328at 345.476 kb on - strand, within Echvi_0328at 345.481 kb on + strand, within Echvi_0328at 345.506 kb on - strand, within Echvi_0328at 345.632 kb on + strand, within Echvi_0328at 345.731 kb on - strandat 345.770 kb on + strandat 345.818 kb on + strandat 345.829 kb on + strandat 345.829 kb on + strandat 345.851 kb on + strandat 345.917 kb on + strand, within Echvi_0329at 345.944 kb on + strand, within Echvi_0329at 345.945 kb on - strand, within Echvi_0329at 345.946 kb on + strand, within Echvi_0329at 345.998 kb on - strand, within Echvi_0329at 345.999 kb on + strand, within Echvi_0329at 346.055 kb on + strandat 346.056 kb on - strandat 346.058 kb on + strandat 346.058 kb on + strandat 346.058 kb on + strandat 346.058 kb on + strandat 346.094 kb on - strandat 346.158 kb on + strandat 346.159 kb on - strandat 346.161 kb on + strandat 346.162 kb on - strandat 346.162 kb on - strandat 346.165 kb on - strandat 346.165 kb on - strandat 346.261 kb on - strandat 346.278 kb on + strandat 346.378 kb on - strand, within Echvi_0330at 346.562 kb on - strand, within Echvi_0330at 346.606 kb on - strand, within Echvi_0330at 346.938 kb on + strand, within Echvi_0330at 346.968 kb on + strand, within Echvi_0330at 346.968 kb on + strand, within Echvi_0330at 346.968 kb on + strand, within Echvi_0330at 346.969 kb on - strand, within Echvi_0330at 346.969 kb on - strand, within Echvi_0330at 346.978 kb on + strand, within Echvi_0330at 346.978 kb on + strand, within Echvi_0330at 347.072 kb on - strandat 347.075 kb on + strandat 347.185 kb on + strandat 347.186 kb on - strandat 347.204 kb on + strandat 347.271 kb on + strandat 347.276 kb on - strandat 347.276 kb on - strandat 347.276 kb on - strandat 347.287 kb on - strandat 347.294 kb on - strandat 347.308 kb on - strandat 347.355 kb on + strandat 347.356 kb on - strandat 347.365 kb on + strandat 347.532 kb on + strand, within Echvi_0331at 347.533 kb on - strand, within Echvi_0331at 347.537 kb on + strand, within Echvi_0331at 347.538 kb on - strand, within Echvi_0331at 347.556 kb on - strand, within Echvi_0331at 347.630 kb on + strand, within Echvi_0331at 347.631 kb on - strand, within Echvi_0331at 347.631 kb on - strand, within Echvi_0331at 347.756 kb on + strand, within Echvi_0331at 347.855 kb on + strand, within Echvi_0331at 347.855 kb on + strand, within Echvi_0331at 347.855 kb on + strand, within Echvi_0331at 347.856 kb on - strand, within Echvi_0331

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
remove
345,291 - Echvi_0328 0.27 +0.5
345,303 + Echvi_0328 0.29 -0.6
345,304 - Echvi_0328 0.29 +1.1
345,304 - Echvi_0328 0.29 +0.5
345,368 + Echvi_0328 0.38 +0.6
345,368 + Echvi_0328 0.38 -0.3
345,368 + Echvi_0328 0.38 +0.7
345,368 + Echvi_0328 0.38 -0.6
345,369 - Echvi_0328 0.38 -0.4
345,369 - Echvi_0328 0.38 -0.1
345,408 + Echvi_0328 0.44 -1.1
345,416 + Echvi_0328 0.45 +0.3
345,438 - Echvi_0328 0.49 +1.0
345,476 - Echvi_0328 0.55 -1.5
345,481 + Echvi_0328 0.55 +0.4
345,506 - Echvi_0328 0.59 -1.3
345,632 + Echvi_0328 0.78 -1.1
345,731 - -0.3
345,770 + -0.1
345,818 + +0.4
345,829 + -0.1
345,829 + +1.1
345,851 + -0.2
345,917 + Echvi_0329 0.34 -1.0
345,944 + Echvi_0329 0.47 +0.9
345,945 - Echvi_0329 0.48 -1.1
345,946 + Echvi_0329 0.48 -0.3
345,998 - Echvi_0329 0.74 -1.2
345,999 + Echvi_0329 0.74 +0.3
346,055 + +0.4
346,056 - +0.2
346,058 + -0.3
346,058 + +0.4
346,058 + +0.0
346,058 + -0.9
346,094 - -0.6
346,158 + -0.7
346,159 - -0.0
346,161 + +0.7
346,162 - +0.2
346,162 - +1.1
346,165 - -0.0
346,165 - -0.7
346,261 - +1.6
346,278 + -2.5
346,378 - Echvi_0330 0.12 +0.2
346,562 - Echvi_0330 0.35 -0.5
346,606 - Echvi_0330 0.40 -1.1
346,938 + Echvi_0330 0.81 -1.3
346,968 + Echvi_0330 0.85 -0.1
346,968 + Echvi_0330 0.85 +0.3
346,968 + Echvi_0330 0.85 -1.8
346,969 - Echvi_0330 0.85 -0.7
346,969 - Echvi_0330 0.85 -0.5
346,978 + Echvi_0330 0.86 -2.6
346,978 + Echvi_0330 0.86 -0.3
347,072 - -0.5
347,075 + +0.5
347,185 + +0.5
347,186 - -0.7
347,204 + -0.2
347,271 + +0.5
347,276 - -0.7
347,276 - -0.1
347,276 - -0.7
347,287 - -0.7
347,294 - -1.0
347,308 - -0.1
347,355 + -0.5
347,356 - -0.2
347,365 + -0.8
347,532 + Echvi_0331 0.10 -0.2
347,533 - Echvi_0331 0.10 -0.1
347,537 + Echvi_0331 0.10 -0.2
347,538 - Echvi_0331 0.11 +0.3
347,556 - Echvi_0331 0.12 -0.4
347,630 + Echvi_0331 0.16 -1.0
347,631 - Echvi_0331 0.16 -0.1
347,631 - Echvi_0331 0.16 +1.1
347,756 + Echvi_0331 0.24 +0.4
347,855 + Echvi_0331 0.30 -0.5
347,855 + Echvi_0331 0.30 +0.2
347,855 + Echvi_0331 0.30 +1.9
347,856 - Echvi_0331 0.31 -0.4

Or see this region's nucleotide sequence