Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0178 and Echvi_0179 are separated by 465 nucleotides Echvi_0179 and Echvi_0180 are separated by 50 nucleotides Echvi_0180 and Echvi_0181 are separated by 154 nucleotides
Echvi_0178: Echvi_0178 - Bacteroidetes-specific putative membrane protein, at 195,851 to 196,819
_0178
Echvi_0179: Echvi_0179 - Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases, at 197,285 to 197,680
_0179
Echvi_0180: Echvi_0180 - transcription elongation factor GreA, at 197,731 to 198,204
_0180
Echvi_0181: Echvi_0181 - Phosphoglycerate dehydrogenase and related dehydrogenases, at 198,359 to 199,294
_0181
Position (kb) 197
198 Strain fitness (log2 ratio) -2
-1
0
1
2 at 196.327 kb on + strand, within Echvi_0178 at 196.327 kb on + strand, within Echvi_0178 at 196.331 kb on - strand, within Echvi_0178 at 196.343 kb on + strand, within Echvi_0178 at 196.349 kb on + strand, within Echvi_0178 at 196.349 kb on + strand, within Echvi_0178 at 196.350 kb on - strand, within Echvi_0178 at 196.350 kb on - strand, within Echvi_0178 at 196.350 kb on - strand, within Echvi_0178 at 196.354 kb on + strand, within Echvi_0178 at 196.364 kb on + strand, within Echvi_0178 at 196.406 kb on + strand, within Echvi_0178 at 196.420 kb on + strand, within Echvi_0178 at 196.426 kb on - strand, within Echvi_0178 at 196.437 kb on + strand, within Echvi_0178 at 196.506 kb on + strand, within Echvi_0178 at 196.506 kb on + strand, within Echvi_0178 at 196.507 kb on - strand, within Echvi_0178 at 196.507 kb on - strand, within Echvi_0178 at 196.507 kb on - strand, within Echvi_0178 at 196.579 kb on + strand, within Echvi_0178 at 196.656 kb on + strand, within Echvi_0178 at 196.657 kb on - strand, within Echvi_0178 at 196.672 kb on - strand, within Echvi_0178 at 196.672 kb on - strand, within Echvi_0178 at 196.672 kb on - strand, within Echvi_0178 at 196.687 kb on - strand, within Echvi_0178 at 196.687 kb on - strand, within Echvi_0178 at 196.708 kb on + strand, within Echvi_0178 at 196.709 kb on - strand, within Echvi_0178 at 196.709 kb on - strand, within Echvi_0178 at 196.724 kb on + strand at 196.726 kb on + strand at 196.726 kb on + strand at 196.727 kb on - strand at 196.728 kb on + strand at 196.728 kb on + strand at 196.729 kb on - strand at 196.766 kb on + strand at 196.853 kb on + strand at 197.003 kb on + strand at 197.003 kb on + strand at 197.011 kb on + strand at 197.011 kb on + strand at 197.274 kb on - strand at 197.296 kb on + strand at 197.296 kb on + strand at 197.297 kb on - strand at 197.315 kb on + strand at 197.315 kb on + strand at 197.316 kb on - strand at 197.344 kb on + strand, within Echvi_0179 at 197.350 kb on + strand, within Echvi_0179 at 197.351 kb on - strand, within Echvi_0179 at 197.426 kb on + strand, within Echvi_0179 at 197.449 kb on + strand, within Echvi_0179 at 197.450 kb on - strand, within Echvi_0179 at 197.539 kb on - strand, within Echvi_0179 at 197.539 kb on - strand, within Echvi_0179 at 197.543 kb on + strand, within Echvi_0179 at 197.544 kb on - strand, within Echvi_0179 at 197.554 kb on + strand, within Echvi_0179 at 197.554 kb on + strand, within Echvi_0179 at 197.555 kb on - strand, within Echvi_0179 at 197.558 kb on + strand, within Echvi_0179 at 197.633 kb on - strand, within Echvi_0179 at 197.633 kb on - strand, within Echvi_0179 at 197.711 kb on - strand at 197.732 kb on + strand at 197.739 kb on + strand at 197.739 kb on + strand at 197.739 kb on + strand at 197.782 kb on + strand, within Echvi_0180 at 197.890 kb on - strand, within Echvi_0180 at 197.914 kb on - strand at 198.060 kb on - strand, within Echvi_0180 at 198.183 kb on + strand at 198.185 kb on + strand at 198.188 kb on + strand at 198.188 kb on + strand at 198.189 kb on - strand at 198.280 kb on + strand at 198.280 kb on + strand at 198.280 kb on + strand at 198.280 kb on + strand at 198.290 kb on - strand at 198.308 kb on + strand at 198.308 kb on + strand at 198.308 kb on + strand at 198.308 kb on + strand at 198.309 kb on - strand at 198.309 kb on - strand at 198.309 kb on - strand at 198.309 kb on - strand at 198.309 kb on - strand at 198.310 kb on + strand at 198.310 kb on + strand at 198.310 kb on + strand at 198.311 kb on - strand at 198.330 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 196,327 + Echvi_0178 0.49 +0.1 196,327 + Echvi_0178 0.49 +0.8 196,331 - Echvi_0178 0.50 -0.6 196,343 + Echvi_0178 0.51 -0.2 196,349 + Echvi_0178 0.51 +0.7 196,349 + Echvi_0178 0.51 -0.8 196,350 - Echvi_0178 0.51 +1.3 196,350 - Echvi_0178 0.51 +0.6 196,350 - Echvi_0178 0.51 +0.8 196,354 + Echvi_0178 0.52 +0.1 196,364 + Echvi_0178 0.53 -0.5 196,406 + Echvi_0178 0.57 +1.1 196,420 + Echvi_0178 0.59 -0.2 196,426 - Echvi_0178 0.59 -0.7 196,437 + Echvi_0178 0.60 +0.6 196,506 + Echvi_0178 0.68 -0.9 196,506 + Echvi_0178 0.68 -0.7 196,507 - Echvi_0178 0.68 +0.8 196,507 - Echvi_0178 0.68 +1.0 196,507 - Echvi_0178 0.68 +0.0 196,579 + Echvi_0178 0.75 +1.6 196,656 + Echvi_0178 0.83 -0.6 196,657 - Echvi_0178 0.83 -1.5 196,672 - Echvi_0178 0.85 -0.1 196,672 - Echvi_0178 0.85 +0.5 196,672 - Echvi_0178 0.85 -0.4 196,687 - Echvi_0178 0.86 -1.0 196,687 - Echvi_0178 0.86 -0.4 196,708 + Echvi_0178 0.88 -1.2 196,709 - Echvi_0178 0.89 -0.2 196,709 - Echvi_0178 0.89 -0.8 196,724 + -0.8 196,726 + -0.1 196,726 + +0.1 196,727 - -0.5 196,728 + +0.1 196,728 + -0.8 196,729 - -1.9 196,766 + +0.3 196,853 + -0.2 197,003 + -1.0 197,003 + +0.1 197,011 + -0.3 197,011 + -1.2 197,274 - -0.3 197,296 + +0.5 197,296 + -0.5 197,297 - -1.2 197,315 + +0.6 197,315 + -0.2 197,316 - +0.8 197,344 + Echvi_0179 0.15 -0.0 197,350 + Echvi_0179 0.16 +0.1 197,351 - Echvi_0179 0.17 -1.0 197,426 + Echvi_0179 0.36 -1.3 197,449 + Echvi_0179 0.41 +0.3 197,450 - Echvi_0179 0.42 +0.2 197,539 - Echvi_0179 0.64 -0.6 197,539 - Echvi_0179 0.64 -0.5 197,543 + Echvi_0179 0.65 -1.5 197,544 - Echvi_0179 0.65 +1.1 197,554 + Echvi_0179 0.68 +0.6 197,554 + Echvi_0179 0.68 -1.6 197,555 - Echvi_0179 0.68 -0.6 197,558 + Echvi_0179 0.69 -1.3 197,633 - Echvi_0179 0.88 -0.5 197,633 - Echvi_0179 0.88 -0.9 197,711 - +0.3 197,732 + +1.0 197,739 + -1.7 197,739 + +0.2 197,739 + -2.2 197,782 + Echvi_0180 0.11 -0.0 197,890 - Echvi_0180 0.34 -0.9 197,914 - +0.8 198,060 - Echvi_0180 0.69 +0.8 198,183 + +1.4 198,185 + -0.7 198,188 + -1.0 198,188 + -0.5 198,189 - -0.2 198,280 + -0.6 198,280 + +0.2 198,280 + -0.8 198,280 + -0.1 198,290 - -1.5 198,308 + -0.7 198,308 + +0.5 198,308 + +1.4 198,308 + +0.0 198,309 - -1.3 198,309 - +1.2 198,309 - -1.2 198,309 - +1.8 198,309 - -0.2 198,310 + -0.5 198,310 + +0.4 198,310 + -0.7 198,311 - +1.4 198,330 + +0.1
Or see this region's nucleotide sequence