Experiment: Gentibiose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3785 and Atu3786 are separated by 32 nucleotides Atu3786 and Atu3787 are separated by 60 nucleotides
Atu3785: Atu3785 - threonine aldolase, at 873,534 to 874,586
Atu3785
Atu3786: Atu3786 - two component response regulator, at 874,619 to 875,308
Atu3786
Atu3787: Atu3787 - two component sensor kinase, at 875,369 to 878,071
Atu3787
Position (kb) 874
875
876 Strain fitness (log2 ratio) -1
0
1 at 873.636 kb on + strand at 873.644 kb on + strand, within Atu3785 at 873.739 kb on + strand, within Atu3785 at 873.830 kb on + strand, within Atu3785 at 873.901 kb on + strand, within Atu3785 at 873.928 kb on - strand, within Atu3785 at 873.981 kb on - strand, within Atu3785 at 874.056 kb on + strand, within Atu3785 at 874.318 kb on - strand, within Atu3785 at 874.318 kb on - strand, within Atu3785 at 874.409 kb on + strand, within Atu3785 at 874.409 kb on + strand, within Atu3785 at 874.417 kb on - strand, within Atu3785 at 874.451 kb on + strand, within Atu3785 at 874.462 kb on + strand, within Atu3785 at 874.470 kb on - strand, within Atu3785 at 874.470 kb on - strand, within Atu3785 at 874.470 kb on - strand, within Atu3785 at 874.506 kb on + strand at 874.514 kb on - strand at 874.514 kb on - strand at 874.514 kb on - strand at 874.528 kb on + strand at 874.551 kb on - strand at 874.625 kb on - strand at 874.635 kb on + strand at 874.766 kb on - strand, within Atu3786 at 874.912 kb on - strand, within Atu3786 at 874.929 kb on + strand, within Atu3786 at 875.047 kb on - strand, within Atu3786 at 875.060 kb on - strand, within Atu3786 at 875.078 kb on + strand, within Atu3786 at 875.086 kb on - strand, within Atu3786 at 875.174 kb on + strand, within Atu3786 at 875.215 kb on + strand, within Atu3786 at 875.215 kb on + strand, within Atu3786 at 875.339 kb on + strand at 875.450 kb on - strand at 875.505 kb on - strand at 875.514 kb on + strand at 875.514 kb on + strand at 875.522 kb on - strand at 875.535 kb on + strand at 875.632 kb on + strand at 875.665 kb on - strand, within Atu3787 at 875.822 kb on - strand, within Atu3787 at 875.862 kb on - strand, within Atu3787 at 875.872 kb on - strand, within Atu3787 at 875.915 kb on - strand, within Atu3787 at 875.934 kb on + strand, within Atu3787 at 876.005 kb on + strand, within Atu3787 at 876.050 kb on + strand, within Atu3787 at 876.099 kb on - strand, within Atu3787 at 876.104 kb on - strand, within Atu3787 at 876.106 kb on + strand, within Atu3787 at 876.121 kb on + strand, within Atu3787
Per-strain Table
Position Strand Gene LocusTag Fraction Gentibiose (C) remove 873,636 + +0.2 873,644 + Atu3785 0.10 +0.2 873,739 + Atu3785 0.19 +0.3 873,830 + Atu3785 0.28 -0.8 873,901 + Atu3785 0.35 +0.4 873,928 - Atu3785 0.37 -0.0 873,981 - Atu3785 0.42 +0.2 874,056 + Atu3785 0.50 +1.2 874,318 - Atu3785 0.74 +0.2 874,318 - Atu3785 0.74 -0.2 874,409 + Atu3785 0.83 +0.3 874,409 + Atu3785 0.83 +0.4 874,417 - Atu3785 0.84 +1.0 874,451 + Atu3785 0.87 -0.8 874,462 + Atu3785 0.88 +0.8 874,470 - Atu3785 0.89 +0.0 874,470 - Atu3785 0.89 -0.3 874,470 - Atu3785 0.89 -0.1 874,506 + +0.9 874,514 - -0.3 874,514 - +0.4 874,514 - +0.9 874,528 + -0.6 874,551 - +0.6 874,625 - +0.4 874,635 + -0.1 874,766 - Atu3786 0.21 -0.6 874,912 - Atu3786 0.42 +1.0 874,929 + Atu3786 0.45 -0.2 875,047 - Atu3786 0.62 -0.1 875,060 - Atu3786 0.64 -0.5 875,078 + Atu3786 0.67 -0.2 875,086 - Atu3786 0.68 +0.1 875,174 + Atu3786 0.80 -0.1 875,215 + Atu3786 0.86 +0.0 875,215 + Atu3786 0.86 -0.5 875,339 + -0.2 875,450 - +0.1 875,505 - +0.3 875,514 + +0.1 875,514 + -0.6 875,522 - -1.2 875,535 + +0.8 875,632 + -0.2 875,665 - Atu3787 0.11 -0.3 875,822 - Atu3787 0.17 +0.5 875,862 - Atu3787 0.18 -0.2 875,872 - Atu3787 0.19 +0.9 875,915 - Atu3787 0.20 +0.3 875,934 + Atu3787 0.21 -0.0 876,005 + Atu3787 0.24 +1.3 876,050 + Atu3787 0.25 -0.1 876,099 - Atu3787 0.27 +0.1 876,104 - Atu3787 0.27 -0.4 876,106 + Atu3787 0.27 +0.2 876,121 + Atu3787 0.28 -0.6
Or see this region's nucleotide sequence