Experiment: Gentibiose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0184 and Atu0185 are separated by 27 nucleotides Atu0185 and Atu0186 are separated by 99 nucleotides Atu0186 and Atu0187 are separated by 202 nucleotides
Atu0184: Atu0184 - glucokinase, at 186,737 to 187,759
Atu0184
Atu0185: Atu0185 - methylglyoxal synthase, at 187,787 to 188,170
Atu0185
Atu0186: Atu0186 - penicillin-insensitive murein endopeptidase, at 188,270 to 189,325
Atu0186
Atu0187: Atu0187 - ABC transporter, substrate binding protein (peptide), at 189,528 to 191,372
Atu0187
Position (kb) 188
189
190 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 187.580 kb on + strand, within Atu0184 at 187.588 kb on - strand, within Atu0184 at 187.665 kb on + strand at 187.788 kb on - strand at 187.858 kb on - strand, within Atu0185 at 187.908 kb on - strand, within Atu0185 at 187.967 kb on + strand, within Atu0185 at 187.988 kb on - strand, within Atu0185 at 188.220 kb on - strand at 188.355 kb on - strand at 188.382 kb on - strand, within Atu0186 at 188.382 kb on - strand, within Atu0186 at 188.440 kb on + strand, within Atu0186 at 188.507 kb on - strand, within Atu0186 at 188.530 kb on + strand, within Atu0186 at 188.575 kb on - strand, within Atu0186 at 188.575 kb on - strand, within Atu0186 at 188.705 kb on - strand, within Atu0186 at 188.745 kb on + strand, within Atu0186 at 188.786 kb on + strand, within Atu0186 at 188.872 kb on + strand, within Atu0186 at 188.872 kb on + strand, within Atu0186 at 188.872 kb on + strand, within Atu0186 at 188.872 kb on + strand, within Atu0186 at 188.892 kb on - strand, within Atu0186 at 188.892 kb on - strand, within Atu0186 at 188.892 kb on - strand, within Atu0186 at 188.925 kb on + strand, within Atu0186 at 189.097 kb on - strand, within Atu0186 at 189.132 kb on + strand, within Atu0186 at 189.177 kb on - strand, within Atu0186 at 189.235 kb on - strand at 189.235 kb on - strand at 189.235 kb on - strand at 189.257 kb on + strand at 189.304 kb on - strand at 189.411 kb on - strand at 189.482 kb on + strand at 189.550 kb on + strand at 189.584 kb on + strand at 189.611 kb on + strand at 189.750 kb on - strand, within Atu0187 at 189.818 kb on - strand, within Atu0187 at 189.853 kb on - strand, within Atu0187 at 189.874 kb on - strand, within Atu0187 at 189.963 kb on + strand, within Atu0187 at 190.010 kb on + strand, within Atu0187 at 190.030 kb on + strand, within Atu0187 at 190.030 kb on + strand, within Atu0187 at 190.038 kb on - strand, within Atu0187 at 190.052 kb on + strand, within Atu0187 at 190.123 kb on + strand, within Atu0187 at 190.123 kb on - strand, within Atu0187 at 190.205 kb on - strand, within Atu0187 at 190.212 kb on + strand, within Atu0187 at 190.212 kb on - strand, within Atu0187 at 190.252 kb on + strand, within Atu0187 at 190.252 kb on + strand, within Atu0187 at 190.260 kb on - strand, within Atu0187 at 190.260 kb on - strand, within Atu0187
Per-strain Table
Position Strand Gene LocusTag Fraction Gentibiose (C) remove 187,580 + Atu0184 0.82 -4.4 187,588 - Atu0184 0.83 -2.4 187,665 + -3.1 187,788 - -5.3 187,858 - Atu0185 0.18 -3.0 187,908 - Atu0185 0.32 -3.5 187,967 + Atu0185 0.47 -2.8 187,988 - Atu0185 0.52 -3.8 188,220 - -2.4 188,355 - +0.2 188,382 - Atu0186 0.11 -0.3 188,382 - Atu0186 0.11 -0.3 188,440 + Atu0186 0.16 +0.6 188,507 - Atu0186 0.22 -0.9 188,530 + Atu0186 0.25 +0.2 188,575 - Atu0186 0.29 +0.1 188,575 - Atu0186 0.29 +0.0 188,705 - Atu0186 0.41 -0.0 188,745 + Atu0186 0.45 -0.2 188,786 + Atu0186 0.49 +0.3 188,872 + Atu0186 0.57 -0.1 188,872 + Atu0186 0.57 -0.5 188,872 + Atu0186 0.57 -0.4 188,872 + Atu0186 0.57 +0.3 188,892 - Atu0186 0.59 -0.0 188,892 - Atu0186 0.59 -0.3 188,892 - Atu0186 0.59 -1.4 188,925 + Atu0186 0.62 +0.2 189,097 - Atu0186 0.78 -0.3 189,132 + Atu0186 0.82 +1.1 189,177 - Atu0186 0.86 -0.2 189,235 - -0.9 189,235 - +0.5 189,235 - +0.2 189,257 + -0.1 189,304 - -0.3 189,411 - -0.3 189,482 + +0.4 189,550 + -0.5 189,584 + -0.9 189,611 + +0.4 189,750 - Atu0187 0.12 -0.2 189,818 - Atu0187 0.16 -0.6 189,853 - Atu0187 0.18 +0.3 189,874 - Atu0187 0.19 -0.8 189,963 + Atu0187 0.24 -0.4 190,010 + Atu0187 0.26 +0.3 190,030 + Atu0187 0.27 +0.7 190,030 + Atu0187 0.27 +0.1 190,038 - Atu0187 0.28 +0.2 190,052 + Atu0187 0.28 -1.6 190,123 + Atu0187 0.32 +0.2 190,123 - Atu0187 0.32 -0.9 190,205 - Atu0187 0.37 -0.6 190,212 + Atu0187 0.37 -0.2 190,212 - Atu0187 0.37 -0.4 190,252 + Atu0187 0.39 -0.0 190,252 + Atu0187 0.39 -0.9 190,260 - Atu0187 0.40 +1.3 190,260 - Atu0187 0.40 -0.2
Or see this region's nucleotide sequence