Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2144

Experiment: L-Glutamine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPfGW456L13_2142 and PfGW456L13_2143 are separated by 80 nucleotidesPfGW456L13_2143 and PfGW456L13_2144 are separated by 232 nucleotidesPfGW456L13_2144 and PfGW456L13_2145 are separated by 41 nucleotidesPfGW456L13_2145 and PfGW456L13_2146 are separated by 337 nucleotides PfGW456L13_2142 - Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1), at 2,344,276 to 2,345,715 _2142 PfGW456L13_2143 - Translation initiation factor 2 (IF-2; GTPase), at 2,345,796 to 2,346,275 _2143 PfGW456L13_2144 - proteinase inhibitor, at 2,346,508 to 2,346,696 _2144 PfGW456L13_2145 - Collagenase and related proteases, at 2,346,738 to 2,347,343 _2145 PfGW456L13_2146 - Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily, at 2,347,681 to 2,349,774 _2146 Position (kb) 2346 2347Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2345.714 kb on - strandat 2345.714 kb on - strandat 2345.760 kb on + strandat 2345.760 kb on + strandat 2345.760 kb on + strandat 2345.760 kb on + strandat 2345.760 kb on + strandat 2345.760 kb on + strandat 2345.761 kb on - strandat 2345.761 kb on - strandat 2345.761 kb on - strandat 2345.761 kb on - strandat 2345.761 kb on - strandat 2345.793 kb on + strandat 2345.793 kb on + strandat 2345.793 kb on + strandat 2345.793 kb on + strandat 2345.793 kb on + strandat 2345.794 kb on - strandat 2345.794 kb on - strandat 2345.794 kb on - strandat 2345.847 kb on - strand, within PfGW456L13_2143at 2345.891 kb on + strand, within PfGW456L13_2143at 2345.954 kb on + strand, within PfGW456L13_2143at 2346.041 kb on + strand, within PfGW456L13_2143at 2346.041 kb on + strand, within PfGW456L13_2143at 2346.041 kb on + strand, within PfGW456L13_2143at 2346.042 kb on - strand, within PfGW456L13_2143at 2346.273 kb on + strandat 2346.364 kb on + strandat 2346.369 kb on + strandat 2346.384 kb on - strandat 2346.390 kb on + strandat 2346.391 kb on - strandat 2346.507 kb on + strandat 2346.507 kb on + strandat 2346.508 kb on - strandat 2346.571 kb on - strand, within PfGW456L13_2144at 2346.704 kb on + strandat 2346.704 kb on + strandat 2346.705 kb on - strandat 2346.705 kb on - strandat 2346.724 kb on + strandat 2346.724 kb on + strandat 2346.731 kb on + strandat 2346.731 kb on + strandat 2346.732 kb on - strandat 2346.732 kb on - strandat 2346.737 kb on + strandat 2346.737 kb on + strandat 2346.737 kb on + strandat 2346.738 kb on - strandat 2346.755 kb on + strandat 2346.755 kb on + strandat 2346.755 kb on + strandat 2346.755 kb on + strandat 2346.755 kb on + strandat 2346.756 kb on - strandat 2346.756 kb on - strandat 2346.756 kb on - strandat 2346.756 kb on - strandat 2346.756 kb on - strandat 2346.879 kb on + strand, within PfGW456L13_2145at 2346.879 kb on + strand, within PfGW456L13_2145at 2346.879 kb on + strand, within PfGW456L13_2145at 2346.879 kb on + strand, within PfGW456L13_2145at 2346.880 kb on - strandat 2346.880 kb on - strand, within PfGW456L13_2145at 2346.889 kb on - strand, within PfGW456L13_2145at 2346.889 kb on - strand, within PfGW456L13_2145at 2347.026 kb on + strand, within PfGW456L13_2145at 2347.026 kb on + strandat 2347.026 kb on + strand, within PfGW456L13_2145at 2347.026 kb on + strand, within PfGW456L13_2145at 2347.026 kb on + strand, within PfGW456L13_2145at 2347.026 kb on + strand, within PfGW456L13_2145at 2347.026 kb on + strand, within PfGW456L13_2145at 2347.026 kb on + strand, within PfGW456L13_2145at 2347.027 kb on - strand, within PfGW456L13_2145at 2347.027 kb on - strand, within PfGW456L13_2145at 2347.027 kb on - strand, within PfGW456L13_2145at 2347.027 kb on - strand, within PfGW456L13_2145at 2347.027 kb on - strand, within PfGW456L13_2145at 2347.027 kb on - strand, within PfGW456L13_2145at 2347.140 kb on + strand, within PfGW456L13_2145at 2347.140 kb on + strand, within PfGW456L13_2145at 2347.141 kb on - strand, within PfGW456L13_2145at 2347.201 kb on + strand, within PfGW456L13_2145at 2347.230 kb on + strand, within PfGW456L13_2145at 2347.230 kb on + strand, within PfGW456L13_2145at 2347.230 kb on + strand, within PfGW456L13_2145at 2347.231 kb on - strand, within PfGW456L13_2145at 2347.231 kb on - strand, within PfGW456L13_2145at 2347.231 kb on - strand, within PfGW456L13_2145at 2347.307 kb on + strandat 2347.307 kb on + strandat 2347.308 kb on - strandat 2347.341 kb on + strandat 2347.341 kb on + strandat 2347.341 kb on + strandat 2347.341 kb on + strandat 2347.341 kb on + strandat 2347.341 kb on + strandat 2347.342 kb on - strandat 2347.342 kb on - strandat 2347.342 kb on - strandat 2347.342 kb on - strandat 2347.342 kb on - strandat 2347.423 kb on + strandat 2347.424 kb on - strandat 2347.438 kb on + strandat 2347.505 kb on + strandat 2347.506 kb on - strandat 2347.506 kb on - strandat 2347.542 kb on + strandat 2347.542 kb on + strandat 2347.543 kb on - strandat 2347.546 kb on + strandat 2347.546 kb on + strandat 2347.546 kb on + strandat 2347.546 kb on + strandat 2347.546 kb on + strandat 2347.547 kb on - strandat 2347.547 kb on - strandat 2347.547 kb on - strandat 2347.547 kb on - strandat 2347.610 kb on + strandat 2347.641 kb on + strandat 2347.641 kb on + strandat 2347.642 kb on - strandat 2347.642 kb on - strandat 2347.642 kb on - strandat 2347.672 kb on + strandat 2347.672 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
remove
2,345,714 - -1.8
2,345,714 - +0.3
2,345,760 + -2.5
2,345,760 + +1.3
2,345,760 + +1.0
2,345,760 + +0.5
2,345,760 + -0.9
2,345,760 + -0.1
2,345,761 - -0.7
2,345,761 - -0.3
2,345,761 - -0.2
2,345,761 - +1.8
2,345,761 - -1.1
2,345,793 + +2.3
2,345,793 + -2.8
2,345,793 + +0.3
2,345,793 + -1.6
2,345,793 + -0.1
2,345,794 - -0.7
2,345,794 - -0.2
2,345,794 - -0.9
2,345,847 - PfGW456L13_2143 0.11 -0.6
2,345,891 + PfGW456L13_2143 0.20 -1.5
2,345,954 + PfGW456L13_2143 0.33 +1.2
2,346,041 + PfGW456L13_2143 0.51 -0.1
2,346,041 + PfGW456L13_2143 0.51 -0.5
2,346,041 + PfGW456L13_2143 0.51 +0.3
2,346,042 - PfGW456L13_2143 0.51 +0.2
2,346,273 + -0.5
2,346,364 + +0.4
2,346,369 + -0.6
2,346,384 - +1.0
2,346,390 + +0.1
2,346,391 - +0.3
2,346,507 + +0.6
2,346,507 + -0.4
2,346,508 - +1.1
2,346,571 - PfGW456L13_2144 0.33 +1.5
2,346,704 + -0.8
2,346,704 + -1.4
2,346,705 - -0.0
2,346,705 - -1.3
2,346,724 + +1.2
2,346,724 + +0.7
2,346,731 + +1.1
2,346,731 + -0.1
2,346,732 - +0.8
2,346,732 - -0.6
2,346,737 + +0.1
2,346,737 + -0.3
2,346,737 + +0.5
2,346,738 - +1.0
2,346,755 + -0.0
2,346,755 + -1.2
2,346,755 + -0.1
2,346,755 + +0.1
2,346,755 + +1.7
2,346,756 - +1.1
2,346,756 - -1.8
2,346,756 - -0.2
2,346,756 - -1.2
2,346,756 - -0.5
2,346,879 + PfGW456L13_2145 0.23 +1.1
2,346,879 + PfGW456L13_2145 0.23 +1.2
2,346,879 + PfGW456L13_2145 0.23 -1.1
2,346,879 + PfGW456L13_2145 0.23 -0.1
2,346,880 - +2.3
2,346,880 - PfGW456L13_2145 0.23 -1.2
2,346,889 - PfGW456L13_2145 0.25 +0.0
2,346,889 - PfGW456L13_2145 0.25 -0.1
2,347,026 + PfGW456L13_2145 0.48 +0.6
2,347,026 + +0.0
2,347,026 + PfGW456L13_2145 0.48 -0.8
2,347,026 + PfGW456L13_2145 0.48 +0.3
2,347,026 + PfGW456L13_2145 0.48 -0.5
2,347,026 + PfGW456L13_2145 0.48 +1.7
2,347,026 + PfGW456L13_2145 0.48 +1.9
2,347,026 + PfGW456L13_2145 0.48 +0.1
2,347,027 - PfGW456L13_2145 0.48 -0.4
2,347,027 - PfGW456L13_2145 0.48 +1.2
2,347,027 - PfGW456L13_2145 0.48 +0.3
2,347,027 - PfGW456L13_2145 0.48 -1.8
2,347,027 - PfGW456L13_2145 0.48 +0.0
2,347,027 - PfGW456L13_2145 0.48 -0.7
2,347,140 + PfGW456L13_2145 0.66 -0.5
2,347,140 + PfGW456L13_2145 0.66 -0.9
2,347,141 - PfGW456L13_2145 0.67 -0.4
2,347,201 + PfGW456L13_2145 0.76 -0.1
2,347,230 + PfGW456L13_2145 0.81 +0.6
2,347,230 + PfGW456L13_2145 0.81 +0.4
2,347,230 + PfGW456L13_2145 0.81 -0.5
2,347,231 - PfGW456L13_2145 0.81 +2.2
2,347,231 - PfGW456L13_2145 0.81 -0.5
2,347,231 - PfGW456L13_2145 0.81 +0.6
2,347,307 + -0.0
2,347,307 + +0.8
2,347,308 - +1.2
2,347,341 + +0.1
2,347,341 + -1.4
2,347,341 + +0.5
2,347,341 + -0.1
2,347,341 + -1.1
2,347,341 + -0.6
2,347,342 - -0.4
2,347,342 - -0.7
2,347,342 - -0.1
2,347,342 - +1.1
2,347,342 - -1.4
2,347,423 + -0.8
2,347,424 - +0.2
2,347,438 + -0.2
2,347,505 + +0.6
2,347,506 - +0.3
2,347,506 - -1.8
2,347,542 + -0.4
2,347,542 + -0.1
2,347,543 - -1.3
2,347,546 + -0.8
2,347,546 + -2.1
2,347,546 + -0.9
2,347,546 + +1.3
2,347,546 + -1.8
2,347,547 - -0.9
2,347,547 - -0.2
2,347,547 - +1.7
2,347,547 - +0.2
2,347,610 + -0.2
2,347,641 + -0.1
2,347,641 + +0.2
2,347,642 - +0.2
2,347,642 - -0.1
2,347,642 - -1.4
2,347,672 + +0.9
2,347,672 + +0.8

Or see this region's nucleotide sequence