Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_2104

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_2103 and PfGW456L13_2104 are separated by 179 nucleotidesPfGW456L13_2104 and PfGW456L13_2105 are separated by 16 nucleotidesPfGW456L13_2105 and PfGW456L13_2106 are separated by 196 nucleotides PfGW456L13_2103 - Phosphate:acyl-ACP acyltransferase PlsX, at 2,308,613 to 2,309,593 _2103 PfGW456L13_2104 - Malonyl CoA-acyl carrier protein transacylase (EC 2.3.1.39), at 2,309,773 to 2,310,657 _2104 PfGW456L13_2105 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 2,310,674 to 2,311,414 _2105 PfGW456L13_2106 - Acyl carrier protein, at 2,311,611 to 2,311,847 _2106 Position (kb) 2309 2310 2311Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2309.100 kb on + strand, within PfGW456L13_2103at 2309.207 kb on + strand, within PfGW456L13_2103at 2309.207 kb on + strand, within PfGW456L13_2103at 2309.207 kb on + strand, within PfGW456L13_2103at 2309.207 kb on + strand, within PfGW456L13_2103at 2309.208 kb on - strand, within PfGW456L13_2103at 2309.208 kb on - strand, within PfGW456L13_2103at 2309.208 kb on - strand, within PfGW456L13_2103at 2309.208 kb on - strand, within PfGW456L13_2103at 2309.208 kb on - strand, within PfGW456L13_2103at 2309.208 kb on - strand, within PfGW456L13_2103at 2309.238 kb on - strand, within PfGW456L13_2103at 2309.615 kb on + strandat 2309.615 kb on + strandat 2309.615 kb on + strandat 2309.615 kb on + strandat 2309.616 kb on - strandat 2309.616 kb on - strandat 2309.616 kb on - strandat 2309.616 kb on - strandat 2309.705 kb on + strandat 2311.406 kb on + strandat 2311.406 kb on + strandat 2311.406 kb on + strandat 2311.406 kb on + strandat 2311.406 kb on + strandat 2311.406 kb on + strandat 2311.406 kb on + strandat 2311.406 kb on + strandat 2311.406 kb on + strandat 2311.406 kb on + strandat 2311.406 kb on + strandat 2311.406 kb on + strandat 2311.406 kb on + strandat 2311.412 kb on + strandat 2311.412 kb on + strandat 2311.412 kb on + strandat 2311.412 kb on + strandat 2311.412 kb on + strandat 2311.412 kb on + strandat 2311.449 kb on + strandat 2311.449 kb on + strandat 2311.449 kb on + strandat 2311.449 kb on + strandat 2311.449 kb on + strandat 2311.449 kb on + strandat 2311.472 kb on + strandat 2311.472 kb on + strandat 2311.485 kb on + strandat 2311.485 kb on + strandat 2311.485 kb on + strandat 2311.485 kb on + strandat 2311.491 kb on + strandat 2311.491 kb on + strandat 2311.553 kb on + strandat 2311.553 kb on + strandat 2311.555 kb on + strandat 2311.561 kb on + strandat 2311.561 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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2,309,100 + PfGW456L13_2103 0.50 -3.1
2,309,207 + PfGW456L13_2103 0.61 -1.1
2,309,207 + PfGW456L13_2103 0.61 -0.0
2,309,207 + PfGW456L13_2103 0.61 -3.9
2,309,207 + PfGW456L13_2103 0.61 -0.7
2,309,208 - PfGW456L13_2103 0.61 -2.8
2,309,208 - PfGW456L13_2103 0.61 -1.3
2,309,208 - PfGW456L13_2103 0.61 -2.4
2,309,208 - PfGW456L13_2103 0.61 -1.4
2,309,208 - PfGW456L13_2103 0.61 -3.0
2,309,208 - PfGW456L13_2103 0.61 +0.7
2,309,238 - PfGW456L13_2103 0.64 -1.8
2,309,615 + +0.9
2,309,615 + +0.3
2,309,615 + +0.5
2,309,615 + -0.2
2,309,616 - +1.3
2,309,616 - -0.1
2,309,616 - -1.5
2,309,616 - +1.1
2,309,705 + +0.3
2,311,406 + -0.7
2,311,406 + -0.2
2,311,406 + +1.3
2,311,406 + -0.2
2,311,406 + +0.2
2,311,406 + +0.3
2,311,406 + +0.1
2,311,406 + -1.7
2,311,406 + +0.9
2,311,406 + +1.5
2,311,406 + +1.3
2,311,406 + +0.5
2,311,406 + -1.1
2,311,412 + +0.3
2,311,412 + +0.1
2,311,412 + +1.0
2,311,412 + +0.9
2,311,412 + -0.0
2,311,412 + -1.3
2,311,449 + +0.0
2,311,449 + -0.5
2,311,449 + +0.7
2,311,449 + +0.1
2,311,449 + -0.9
2,311,449 + -1.6
2,311,472 + +0.4
2,311,472 + +1.7
2,311,485 + -0.9
2,311,485 + -0.4
2,311,485 + +1.3
2,311,485 + +1.4
2,311,491 + +0.7
2,311,491 + +0.7
2,311,553 + +2.3
2,311,553 + +2.7
2,311,555 + -1.7
2,311,561 + -0.6
2,311,561 + +1.1

Or see this region's nucleotide sequence