Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1568

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_1566 and PfGW456L13_1567 are separated by 27 nucleotidesPfGW456L13_1567 and PfGW456L13_1568 overlap by 1 nucleotidesPfGW456L13_1568 and PfGW456L13_1569 are separated by 15 nucleotides PfGW456L13_1566 - ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1), at 1,729,732 to 1,730,778 _1566 PfGW456L13_1567 - Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1), at 1,730,806 to 1,731,612 _1567 PfGW456L13_1568 - Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1), at 1,731,612 to 1,732,532 _1568 PfGW456L13_1569 - Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1), at 1,732,548 to 1,733,666 _1569 Position (kb) 1731 1732 1733Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1730.613 kb on + strand, within PfGW456L13_1566at 1730.613 kb on + strand, within PfGW456L13_1566at 1730.613 kb on + strand, within PfGW456L13_1566at 1730.613 kb on + strand, within PfGW456L13_1566at 1730.614 kb on - strand, within PfGW456L13_1566at 1730.614 kb on - strand, within PfGW456L13_1566at 1730.614 kb on - strand, within PfGW456L13_1566at 1730.614 kb on - strand, within PfGW456L13_1566at 1730.763 kb on + strandat 1730.763 kb on + strandat 1730.763 kb on + strandat 1730.781 kb on + strandat 1730.781 kb on + strandat 1730.781 kb on + strandat 1730.781 kb on + strandat 1730.781 kb on + strandat 1730.781 kb on + strandat 1730.782 kb on - strandat 1730.782 kb on - strandat 1730.782 kb on - strandat 1730.782 kb on - strandat 1730.798 kb on + strandat 1730.798 kb on + strandat 1730.798 kb on + strandat 1730.798 kb on + strandat 1730.798 kb on + strandat 1730.799 kb on - strandat 1730.799 kb on - strandat 1730.799 kb on - strandat 1730.799 kb on - strandat 1730.799 kb on - strandat 1730.831 kb on + strandat 1730.831 kb on + strandat 1730.832 kb on - strandat 1730.832 kb on - strandat 1730.832 kb on - strandat 1731.080 kb on + strand, within PfGW456L13_1567at 1731.080 kb on + strand, within PfGW456L13_1567at 1731.080 kb on + strand, within PfGW456L13_1567at 1731.081 kb on - strand, within PfGW456L13_1567at 1731.081 kb on - strand, within PfGW456L13_1567at 1731.081 kb on - strand, within PfGW456L13_1567at 1731.194 kb on + strand, within PfGW456L13_1567at 1731.195 kb on - strand, within PfGW456L13_1567at 1731.440 kb on + strand, within PfGW456L13_1567at 1731.530 kb on + strand, within PfGW456L13_1567at 1731.530 kb on + strand, within PfGW456L13_1567at 1731.530 kb on + strand, within PfGW456L13_1567at 1731.530 kb on + strand, within PfGW456L13_1567at 1731.530 kb on + strand, within PfGW456L13_1567at 1731.536 kb on + strandat 1731.536 kb on + strandat 1731.536 kb on + strandat 1731.536 kb on + strandat 1731.536 kb on + strandat 1731.537 kb on - strandat 1731.537 kb on - strandat 1731.537 kb on - strandat 1731.537 kb on - strandat 1731.537 kb on - strandat 1731.537 kb on - strandat 1731.537 kb on - strandat 1731.537 kb on - strandat 1731.537 kb on - strandat 1731.537 kb on - strandat 1731.658 kb on + strandat 1731.659 kb on - strandat 1731.725 kb on + strand, within PfGW456L13_1568at 1731.725 kb on + strand, within PfGW456L13_1568at 1731.726 kb on - strand, within PfGW456L13_1568at 1731.726 kb on - strand, within PfGW456L13_1568at 1731.961 kb on + strand, within PfGW456L13_1568at 1731.961 kb on + strand, within PfGW456L13_1568at 1731.962 kb on - strand, within PfGW456L13_1568at 1731.962 kb on - strand, within PfGW456L13_1568at 1731.962 kb on - strand, within PfGW456L13_1568at 1731.988 kb on + strand, within PfGW456L13_1568at 1731.988 kb on + strand, within PfGW456L13_1568at 1731.988 kb on + strand, within PfGW456L13_1568at 1731.988 kb on + strand, within PfGW456L13_1568at 1731.988 kb on + strand, within PfGW456L13_1568at 1731.988 kb on + strand, within PfGW456L13_1568at 1731.988 kb on + strand, within PfGW456L13_1568at 1731.988 kb on + strand, within PfGW456L13_1568at 1731.988 kb on + strand, within PfGW456L13_1568at 1731.988 kb on + strand, within PfGW456L13_1568at 1731.988 kb on + strand, within PfGW456L13_1568at 1731.989 kb on - strand, within PfGW456L13_1568at 1731.989 kb on - strand, within PfGW456L13_1568at 1731.989 kb on - strand, within PfGW456L13_1568at 1731.989 kb on - strand, within PfGW456L13_1568at 1731.989 kb on - strand, within PfGW456L13_1568at 1731.992 kb on + strand, within PfGW456L13_1568at 1731.992 kb on + strand, within PfGW456L13_1568at 1731.992 kb on + strand, within PfGW456L13_1568at 1731.992 kb on + strand, within PfGW456L13_1568at 1731.992 kb on + strand, within PfGW456L13_1568at 1731.992 kb on + strand, within PfGW456L13_1568at 1731.992 kb on + strand, within PfGW456L13_1568at 1731.992 kb on + strand, within PfGW456L13_1568at 1731.992 kb on + strand, within PfGW456L13_1568at 1731.992 kb on + strand, within PfGW456L13_1568at 1731.992 kb on + strand, within PfGW456L13_1568at 1731.992 kb on + strand, within PfGW456L13_1568at 1731.992 kb on + strand, within PfGW456L13_1568at 1731.992 kb on + strand, within PfGW456L13_1568at 1731.992 kb on + strand, within PfGW456L13_1568at 1731.992 kb on + strand, within PfGW456L13_1568at 1731.992 kb on + strand, within PfGW456L13_1568at 1731.993 kb on - strand, within PfGW456L13_1568at 1731.993 kb on - strand, within PfGW456L13_1568at 1731.993 kb on - strand, within PfGW456L13_1568at 1731.993 kb on - strand, within PfGW456L13_1568at 1731.993 kb on - strand, within PfGW456L13_1568at 1731.993 kb on - strand, within PfGW456L13_1568at 1731.993 kb on - strand, within PfGW456L13_1568at 1731.993 kb on - strand, within PfGW456L13_1568at 1731.993 kb on - strand, within PfGW456L13_1568at 1731.993 kb on - strand, within PfGW456L13_1568at 1731.993 kb on - strand, within PfGW456L13_1568at 1731.993 kb on - strand, within PfGW456L13_1568at 1731.993 kb on - strand, within PfGW456L13_1568at 1731.993 kb on - strand, within PfGW456L13_1568at 1731.993 kb on - strand, within PfGW456L13_1568at 1731.994 kb on + strand, within PfGW456L13_1568at 1731.994 kb on + strand, within PfGW456L13_1568at 1731.994 kb on + strand, within PfGW456L13_1568at 1731.995 kb on - strand, within PfGW456L13_1568at 1731.995 kb on - strand, within PfGW456L13_1568at 1731.995 kb on - strand, within PfGW456L13_1568at 1731.995 kb on - strand, within PfGW456L13_1568at 1731.995 kb on - strand, within PfGW456L13_1568at 1731.995 kb on - strand, within PfGW456L13_1568at 1731.995 kb on - strand, within PfGW456L13_1568at 1731.995 kb on - strand, within PfGW456L13_1568at 1731.995 kb on - strand, within PfGW456L13_1568at 1731.995 kb on - strand, within PfGW456L13_1568at 1731.995 kb on - strand, within PfGW456L13_1568at 1731.995 kb on - strand, within PfGW456L13_1568at 1731.995 kb on - strand, within PfGW456L13_1568at 1732.008 kb on + strand, within PfGW456L13_1568at 1732.027 kb on + strand, within PfGW456L13_1568at 1732.027 kb on + strand, within PfGW456L13_1568at 1732.027 kb on + strand, within PfGW456L13_1568at 1732.027 kb on + strand, within PfGW456L13_1568at 1732.117 kb on + strand, within PfGW456L13_1568at 1732.117 kb on + strand, within PfGW456L13_1568at 1732.117 kb on + strand, within PfGW456L13_1568at 1732.117 kb on + strand, within PfGW456L13_1568at 1732.118 kb on - strand, within PfGW456L13_1568at 1732.118 kb on - strand, within PfGW456L13_1568at 1732.118 kb on - strand, within PfGW456L13_1568at 1732.118 kb on - strand, within PfGW456L13_1568at 1732.122 kb on - strand, within PfGW456L13_1568at 1732.206 kb on + strand, within PfGW456L13_1568at 1732.288 kb on + strand, within PfGW456L13_1568at 1732.289 kb on - strand, within PfGW456L13_1568at 1732.345 kb on + strand, within PfGW456L13_1568at 1732.345 kb on + strand, within PfGW456L13_1568at 1732.345 kb on + strand, within PfGW456L13_1568at 1732.345 kb on + strand, within PfGW456L13_1568at 1732.345 kb on + strand, within PfGW456L13_1568at 1732.345 kb on + strand, within PfGW456L13_1568at 1732.345 kb on + strand, within PfGW456L13_1568at 1732.346 kb on - strand, within PfGW456L13_1568at 1732.346 kb on - strand, within PfGW456L13_1568at 1732.346 kb on - strand, within PfGW456L13_1568at 1732.346 kb on - strand, within PfGW456L13_1568at 1732.346 kb on - strand, within PfGW456L13_1568at 1732.362 kb on + strand, within PfGW456L13_1568at 1732.363 kb on - strand, within PfGW456L13_1568at 1732.363 kb on - strand, within PfGW456L13_1568at 1732.381 kb on + strand, within PfGW456L13_1568at 1732.684 kb on + strand, within PfGW456L13_1569at 1732.705 kb on + strand, within PfGW456L13_1569at 1732.705 kb on + strand, within PfGW456L13_1569at 1732.705 kb on + strand, within PfGW456L13_1569at 1732.706 kb on - strand, within PfGW456L13_1569at 1732.892 kb on + strand, within PfGW456L13_1569at 1732.893 kb on - strand, within PfGW456L13_1569at 1732.893 kb on - strand, within PfGW456L13_1569at 1732.893 kb on - strand, within PfGW456L13_1569at 1732.954 kb on + strand, within PfGW456L13_1569at 1732.954 kb on + strand, within PfGW456L13_1569at 1732.954 kb on + strand, within PfGW456L13_1569at 1732.954 kb on + strand, within PfGW456L13_1569at 1732.955 kb on - strand, within PfGW456L13_1569at 1732.955 kb on - strand, within PfGW456L13_1569at 1732.955 kb on - strand, within PfGW456L13_1569at 1732.955 kb on - strand, within PfGW456L13_1569at 1732.955 kb on - strand, within PfGW456L13_1569at 1732.955 kb on - strand, within PfGW456L13_1569at 1732.955 kb on - strand, within PfGW456L13_1569at 1733.380 kb on + strand, within PfGW456L13_1569at 1733.381 kb on - strand, within PfGW456L13_1569at 1733.381 kb on - strand, within PfGW456L13_1569at 1733.443 kb on + strand, within PfGW456L13_1569

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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1,730,613 + PfGW456L13_1566 0.84 -0.4
1,730,613 + PfGW456L13_1566 0.84 -1.1
1,730,613 + PfGW456L13_1566 0.84 -1.6
1,730,613 + PfGW456L13_1566 0.84 -0.6
1,730,614 - PfGW456L13_1566 0.84 -0.1
1,730,614 - PfGW456L13_1566 0.84 -0.8
1,730,614 - PfGW456L13_1566 0.84 -1.2
1,730,614 - PfGW456L13_1566 0.84 -0.6
1,730,763 + +0.4
1,730,763 + -0.3
1,730,763 + -0.1
1,730,781 + +0.5
1,730,781 + -0.1
1,730,781 + -0.2
1,730,781 + +1.0
1,730,781 + +0.3
1,730,781 + +0.5
1,730,782 - -0.0
1,730,782 - -1.5
1,730,782 - +0.1
1,730,782 - +0.1
1,730,798 + -1.4
1,730,798 + -0.5
1,730,798 + -0.2
1,730,798 + -0.2
1,730,798 + -1.9
1,730,799 - +1.0
1,730,799 - -1.1
1,730,799 - -1.2
1,730,799 - +0.2
1,730,799 - -0.0
1,730,831 + +0.3
1,730,831 + -0.3
1,730,832 - +1.1
1,730,832 - -0.4
1,730,832 - -1.5
1,731,080 + PfGW456L13_1567 0.34 -0.2
1,731,080 + PfGW456L13_1567 0.34 +0.5
1,731,080 + PfGW456L13_1567 0.34 -2.1
1,731,081 - PfGW456L13_1567 0.34 -1.2
1,731,081 - PfGW456L13_1567 0.34 +0.3
1,731,081 - PfGW456L13_1567 0.34 -1.0
1,731,194 + PfGW456L13_1567 0.48 -0.2
1,731,195 - PfGW456L13_1567 0.48 -1.8
1,731,440 + PfGW456L13_1567 0.79 -0.2
1,731,530 + PfGW456L13_1567 0.90 +1.8
1,731,530 + PfGW456L13_1567 0.90 +0.3
1,731,530 + PfGW456L13_1567 0.90 -1.6
1,731,530 + PfGW456L13_1567 0.90 -0.4
1,731,530 + PfGW456L13_1567 0.90 -0.9
1,731,536 + -0.1
1,731,536 + +0.1
1,731,536 + -0.9
1,731,536 + -2.0
1,731,536 + -1.1
1,731,537 - +0.1
1,731,537 - -0.2
1,731,537 - -0.4
1,731,537 - -1.9
1,731,537 - +1.2
1,731,537 - +0.7
1,731,537 - -0.7
1,731,537 - -0.6
1,731,537 - -2.4
1,731,537 - +0.4
1,731,658 + -0.8
1,731,659 - +0.7
1,731,725 + PfGW456L13_1568 0.12 -1.0
1,731,725 + PfGW456L13_1568 0.12 -0.3
1,731,726 - PfGW456L13_1568 0.12 +0.7
1,731,726 - PfGW456L13_1568 0.12 -1.4
1,731,961 + PfGW456L13_1568 0.38 -0.6
1,731,961 + PfGW456L13_1568 0.38 +0.3
1,731,962 - PfGW456L13_1568 0.38 +0.6
1,731,962 - PfGW456L13_1568 0.38 +0.9
1,731,962 - PfGW456L13_1568 0.38 +0.1
1,731,988 + PfGW456L13_1568 0.41 -2.2
1,731,988 + PfGW456L13_1568 0.41 +0.1
1,731,988 + PfGW456L13_1568 0.41 -0.6
1,731,988 + PfGW456L13_1568 0.41 +0.3
1,731,988 + PfGW456L13_1568 0.41 +0.0
1,731,988 + PfGW456L13_1568 0.41 -1.5
1,731,988 + PfGW456L13_1568 0.41 -0.8
1,731,988 + PfGW456L13_1568 0.41 -0.6
1,731,988 + PfGW456L13_1568 0.41 +0.0
1,731,988 + PfGW456L13_1568 0.41 +0.5
1,731,988 + PfGW456L13_1568 0.41 -0.4
1,731,989 - PfGW456L13_1568 0.41 +0.5
1,731,989 - PfGW456L13_1568 0.41 +0.5
1,731,989 - PfGW456L13_1568 0.41 -1.6
1,731,989 - PfGW456L13_1568 0.41 +0.7
1,731,989 - PfGW456L13_1568 0.41 +0.1
1,731,992 + PfGW456L13_1568 0.41 +0.3
1,731,992 + PfGW456L13_1568 0.41 -0.2
1,731,992 + PfGW456L13_1568 0.41 -2.1
1,731,992 + PfGW456L13_1568 0.41 -1.2
1,731,992 + PfGW456L13_1568 0.41 +0.1
1,731,992 + PfGW456L13_1568 0.41 +1.4
1,731,992 + PfGW456L13_1568 0.41 +0.6
1,731,992 + PfGW456L13_1568 0.41 +0.6
1,731,992 + PfGW456L13_1568 0.41 -2.3
1,731,992 + PfGW456L13_1568 0.41 +0.5
1,731,992 + PfGW456L13_1568 0.41 -0.1
1,731,992 + PfGW456L13_1568 0.41 +0.6
1,731,992 + PfGW456L13_1568 0.41 -0.9
1,731,992 + PfGW456L13_1568 0.41 -0.0
1,731,992 + PfGW456L13_1568 0.41 +0.7
1,731,992 + PfGW456L13_1568 0.41 +0.3
1,731,992 + PfGW456L13_1568 0.41 +1.2
1,731,993 - PfGW456L13_1568 0.41 +2.0
1,731,993 - PfGW456L13_1568 0.41 +0.2
1,731,993 - PfGW456L13_1568 0.41 +0.5
1,731,993 - PfGW456L13_1568 0.41 +0.3
1,731,993 - PfGW456L13_1568 0.41 +1.0
1,731,993 - PfGW456L13_1568 0.41 +0.4
1,731,993 - PfGW456L13_1568 0.41 +0.8
1,731,993 - PfGW456L13_1568 0.41 -1.7
1,731,993 - PfGW456L13_1568 0.41 +0.0
1,731,993 - PfGW456L13_1568 0.41 +0.5
1,731,993 - PfGW456L13_1568 0.41 +0.3
1,731,993 - PfGW456L13_1568 0.41 -0.3
1,731,993 - PfGW456L13_1568 0.41 +0.9
1,731,993 - PfGW456L13_1568 0.41 -1.3
1,731,993 - PfGW456L13_1568 0.41 +0.5
1,731,994 + PfGW456L13_1568 0.41 -0.8
1,731,994 + PfGW456L13_1568 0.41 +1.3
1,731,994 + PfGW456L13_1568 0.41 -0.2
1,731,995 - PfGW456L13_1568 0.42 -1.7
1,731,995 - PfGW456L13_1568 0.42 +0.5
1,731,995 - PfGW456L13_1568 0.42 +0.8
1,731,995 - PfGW456L13_1568 0.42 -0.1
1,731,995 - PfGW456L13_1568 0.42 +0.1
1,731,995 - PfGW456L13_1568 0.42 -0.1
1,731,995 - PfGW456L13_1568 0.42 +1.5
1,731,995 - PfGW456L13_1568 0.42 -0.3
1,731,995 - PfGW456L13_1568 0.42 +1.0
1,731,995 - PfGW456L13_1568 0.42 -0.2
1,731,995 - PfGW456L13_1568 0.42 -0.6
1,731,995 - PfGW456L13_1568 0.42 -0.9
1,731,995 - PfGW456L13_1568 0.42 +0.6
1,732,008 + PfGW456L13_1568 0.43 +0.3
1,732,027 + PfGW456L13_1568 0.45 -0.9
1,732,027 + PfGW456L13_1568 0.45 -0.4
1,732,027 + PfGW456L13_1568 0.45 -0.1
1,732,027 + PfGW456L13_1568 0.45 -1.7
1,732,117 + PfGW456L13_1568 0.55 -0.8
1,732,117 + PfGW456L13_1568 0.55 -2.4
1,732,117 + PfGW456L13_1568 0.55 -0.6
1,732,117 + PfGW456L13_1568 0.55 -0.2
1,732,118 - PfGW456L13_1568 0.55 -2.9
1,732,118 - PfGW456L13_1568 0.55 +0.7
1,732,118 - PfGW456L13_1568 0.55 +0.4
1,732,118 - PfGW456L13_1568 0.55 +0.4
1,732,122 - PfGW456L13_1568 0.55 -0.0
1,732,206 + PfGW456L13_1568 0.64 +0.5
1,732,288 + PfGW456L13_1568 0.73 +1.5
1,732,289 - PfGW456L13_1568 0.74 -0.1
1,732,345 + PfGW456L13_1568 0.80 +1.0
1,732,345 + PfGW456L13_1568 0.80 +0.6
1,732,345 + PfGW456L13_1568 0.80 +0.1
1,732,345 + PfGW456L13_1568 0.80 +0.4
1,732,345 + PfGW456L13_1568 0.80 -0.2
1,732,345 + PfGW456L13_1568 0.80 -0.9
1,732,345 + PfGW456L13_1568 0.80 -0.6
1,732,346 - PfGW456L13_1568 0.80 -1.3
1,732,346 - PfGW456L13_1568 0.80 +0.5
1,732,346 - PfGW456L13_1568 0.80 -0.3
1,732,346 - PfGW456L13_1568 0.80 -0.4
1,732,346 - PfGW456L13_1568 0.80 -1.3
1,732,362 + PfGW456L13_1568 0.81 -1.7
1,732,363 - PfGW456L13_1568 0.82 -0.7
1,732,363 - PfGW456L13_1568 0.82 +1.1
1,732,381 + PfGW456L13_1568 0.83 -0.9
1,732,684 + PfGW456L13_1569 0.12 -1.5
1,732,705 + PfGW456L13_1569 0.14 -0.5
1,732,705 + PfGW456L13_1569 0.14 +1.6
1,732,705 + PfGW456L13_1569 0.14 -1.1
1,732,706 - PfGW456L13_1569 0.14 +0.6
1,732,892 + PfGW456L13_1569 0.31 -0.4
1,732,893 - PfGW456L13_1569 0.31 +0.6
1,732,893 - PfGW456L13_1569 0.31 -0.8
1,732,893 - PfGW456L13_1569 0.31 -0.1
1,732,954 + PfGW456L13_1569 0.36 +0.5
1,732,954 + PfGW456L13_1569 0.36 +0.1
1,732,954 + PfGW456L13_1569 0.36 +0.9
1,732,954 + PfGW456L13_1569 0.36 -0.4
1,732,955 - PfGW456L13_1569 0.36 -2.0
1,732,955 - PfGW456L13_1569 0.36 +0.1
1,732,955 - PfGW456L13_1569 0.36 -0.6
1,732,955 - PfGW456L13_1569 0.36 -0.9
1,732,955 - PfGW456L13_1569 0.36 -0.6
1,732,955 - PfGW456L13_1569 0.36 -2.5
1,732,955 - PfGW456L13_1569 0.36 +1.1
1,733,380 + PfGW456L13_1569 0.74 +0.3
1,733,381 - PfGW456L13_1569 0.74 -1.4
1,733,381 - PfGW456L13_1569 0.74 +0.5
1,733,443 + PfGW456L13_1569 0.80 -0.2

Or see this region's nucleotide sequence