Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1549

Experiment: L-Glutamine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_1547 and PfGW456L13_1548 overlap by 4 nucleotidesPfGW456L13_1548 and PfGW456L13_1549 overlap by 11 nucleotidesPfGW456L13_1549 and PfGW456L13_1550 are separated by 114 nucleotidesPfGW456L13_1550 and PfGW456L13_1551 overlap by 8 nucleotides PfGW456L13_1547 - Chromosome segregation ATPases, at 1,707,480 to 1,710,320 _1547 PfGW456L13_1548 - FIG00961017: hypothetical protein, at 1,710,317 to 1,711,018 _1548 PfGW456L13_1549 - FIG00954491: hypothetical protein, at 1,711,008 to 1,712,351 _1549 PfGW456L13_1550 - Periplasmic protein TonB, links inner and outer membranes, at 1,712,466 to 1,713,251 _1550 PfGW456L13_1551 - Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-), at 1,713,244 to 1,713,696 _1551 Position (kb) 1711 1712 1713Strain fitness (log2 ratio) -3 -2 -1 0 1at 1710.085 kb on + strandat 1710.085 kb on + strandat 1710.085 kb on + strandat 1710.085 kb on + strandat 1710.085 kb on + strandat 1710.085 kb on + strandat 1710.085 kb on + strandat 1710.086 kb on - strandat 1710.086 kb on - strandat 1710.086 kb on - strandat 1710.086 kb on - strandat 1710.086 kb on - strandat 1710.086 kb on - strandat 1710.086 kb on - strandat 1710.086 kb on - strandat 1710.106 kb on + strandat 1710.107 kb on - strandat 1710.133 kb on + strandat 1710.133 kb on + strandat 1710.134 kb on - strandat 1710.204 kb on - strandat 1710.223 kb on + strandat 1710.223 kb on + strandat 1710.224 kb on - strandat 1710.224 kb on - strandat 1710.226 kb on - strandat 1710.226 kb on - strandat 1710.279 kb on + strandat 1710.279 kb on + strandat 1710.279 kb on + strandat 1710.280 kb on - strandat 1710.834 kb on + strand, within PfGW456L13_1548at 1710.834 kb on + strand, within PfGW456L13_1548at 1710.834 kb on + strand, within PfGW456L13_1548at 1710.834 kb on + strand, within PfGW456L13_1548at 1710.835 kb on - strand, within PfGW456L13_1548at 1710.835 kb on - strand, within PfGW456L13_1548at 1710.835 kb on - strand, within PfGW456L13_1548at 1710.837 kb on + strand, within PfGW456L13_1548at 1710.837 kb on + strand, within PfGW456L13_1548at 1710.837 kb on + strand, within PfGW456L13_1548at 1710.838 kb on - strand, within PfGW456L13_1548at 1710.924 kb on + strand, within PfGW456L13_1548at 1710.925 kb on - strand, within PfGW456L13_1548at 1711.004 kb on + strandat 1711.018 kb on + strandat 1711.018 kb on + strandat 1711.018 kb on + strandat 1711.103 kb on + strandat 1711.103 kb on + strandat 1711.103 kb on + strandat 1711.103 kb on + strandat 1711.103 kb on + strandat 1711.104 kb on - strandat 1711.108 kb on + strandat 1711.108 kb on + strandat 1711.109 kb on - strandat 1711.109 kb on - strandat 1711.171 kb on + strand, within PfGW456L13_1549at 1711.363 kb on + strand, within PfGW456L13_1549at 1711.363 kb on + strand, within PfGW456L13_1549at 1711.364 kb on - strand, within PfGW456L13_1549at 1711.364 kb on - strand, within PfGW456L13_1549at 1711.364 kb on - strand, within PfGW456L13_1549at 1711.364 kb on - strand, within PfGW456L13_1549at 1711.369 kb on + strand, within PfGW456L13_1549at 1711.369 kb on + strand, within PfGW456L13_1549at 1711.369 kb on + strand, within PfGW456L13_1549at 1711.369 kb on + strand, within PfGW456L13_1549at 1711.369 kb on + strand, within PfGW456L13_1549at 1711.369 kb on + strand, within PfGW456L13_1549at 1711.369 kb on + strand, within PfGW456L13_1549at 1711.370 kb on - strand, within PfGW456L13_1549at 1711.370 kb on - strand, within PfGW456L13_1549at 1711.370 kb on - strand, within PfGW456L13_1549at 1711.370 kb on - strand, within PfGW456L13_1549at 1711.370 kb on - strand, within PfGW456L13_1549at 1711.370 kb on - strand, within PfGW456L13_1549at 1711.370 kb on - strand, within PfGW456L13_1549at 1711.370 kb on - strand, within PfGW456L13_1549at 1711.747 kb on + strand, within PfGW456L13_1549at 1711.747 kb on + strand, within PfGW456L13_1549at 1711.747 kb on + strand, within PfGW456L13_1549at 1711.747 kb on + strand, within PfGW456L13_1549at 1711.747 kb on + strand, within PfGW456L13_1549at 1711.748 kb on - strand, within PfGW456L13_1549at 1711.951 kb on + strand, within PfGW456L13_1549at 1711.952 kb on - strand, within PfGW456L13_1549at 1711.952 kb on - strand, within PfGW456L13_1549at 1711.952 kb on - strand, within PfGW456L13_1549at 1711.952 kb on - strand, within PfGW456L13_1549at 1711.952 kb on - strand, within PfGW456L13_1549at 1711.952 kb on - strand, within PfGW456L13_1549at 1711.981 kb on + strand, within PfGW456L13_1549at 1711.981 kb on + strand, within PfGW456L13_1549at 1711.982 kb on - strand, within PfGW456L13_1549at 1712.030 kb on - strand, within PfGW456L13_1549at 1712.097 kb on + strand, within PfGW456L13_1549at 1712.097 kb on + strand, within PfGW456L13_1549at 1712.097 kb on + strand, within PfGW456L13_1549at 1712.097 kb on + strand, within PfGW456L13_1549at 1712.098 kb on - strand, within PfGW456L13_1549at 1712.098 kb on - strand, within PfGW456L13_1549at 1712.098 kb on - strand, within PfGW456L13_1549at 1712.098 kb on - strand, within PfGW456L13_1549at 1712.310 kb on + strandat 1712.311 kb on - strandat 1712.311 kb on - strandat 1712.325 kb on + strandat 1712.325 kb on + strandat 1712.325 kb on + strandat 1712.326 kb on - strandat 1712.442 kb on + strandat 1712.442 kb on + strandat 1712.442 kb on + strandat 1712.442 kb on + strandat 1712.442 kb on + strandat 1712.442 kb on + strandat 1712.442 kb on + strandat 1712.442 kb on + strandat 1712.442 kb on + strandat 1713.257 kb on + strandat 1713.258 kb on - strandat 1713.310 kb on + strand, within PfGW456L13_1551at 1713.319 kb on + strand, within PfGW456L13_1551at 1713.320 kb on - strand, within PfGW456L13_1551at 1713.320 kb on - strand, within PfGW456L13_1551at 1713.321 kb on + strand, within PfGW456L13_1551at 1713.322 kb on - strand, within PfGW456L13_1551

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine (C)
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1,710,085 + -0.0
1,710,085 + -1.8
1,710,085 + -0.1
1,710,085 + +1.0
1,710,085 + -1.1
1,710,085 + -1.1
1,710,085 + +0.3
1,710,086 - +0.1
1,710,086 - -1.0
1,710,086 - -0.7
1,710,086 - -1.3
1,710,086 - +0.1
1,710,086 - +0.0
1,710,086 - -0.2
1,710,086 - -0.6
1,710,106 + -2.8
1,710,107 - +0.4
1,710,133 + -2.4
1,710,133 + +1.0
1,710,134 - -0.8
1,710,204 - -2.7
1,710,223 + +0.4
1,710,223 + +0.9
1,710,224 - +0.6
1,710,224 - -0.7
1,710,226 - -1.7
1,710,226 - +0.3
1,710,279 + -0.3
1,710,279 + +0.4
1,710,279 + -1.4
1,710,280 - -0.0
1,710,834 + PfGW456L13_1548 0.74 -1.1
1,710,834 + PfGW456L13_1548 0.74 +1.2
1,710,834 + PfGW456L13_1548 0.74 -0.1
1,710,834 + PfGW456L13_1548 0.74 -2.2
1,710,835 - PfGW456L13_1548 0.74 -1.6
1,710,835 - PfGW456L13_1548 0.74 -1.7
1,710,835 - PfGW456L13_1548 0.74 +0.5
1,710,837 + PfGW456L13_1548 0.74 -2.5
1,710,837 + PfGW456L13_1548 0.74 -0.3
1,710,837 + PfGW456L13_1548 0.74 -1.1
1,710,838 - PfGW456L13_1548 0.74 -0.2
1,710,924 + PfGW456L13_1548 0.86 -0.9
1,710,925 - PfGW456L13_1548 0.87 -0.1
1,711,004 + -2.2
1,711,018 + -2.7
1,711,018 + -1.5
1,711,018 + -3.1
1,711,103 + -2.1
1,711,103 + +0.3
1,711,103 + +0.7
1,711,103 + +0.0
1,711,103 + +0.0
1,711,104 - -1.1
1,711,108 + -0.0
1,711,108 + +0.4
1,711,109 - +0.2
1,711,109 - +0.4
1,711,171 + PfGW456L13_1549 0.12 +0.0
1,711,363 + PfGW456L13_1549 0.26 +0.4
1,711,363 + PfGW456L13_1549 0.26 +0.2
1,711,364 - PfGW456L13_1549 0.26 -0.8
1,711,364 - PfGW456L13_1549 0.26 +0.8
1,711,364 - PfGW456L13_1549 0.26 -1.1
1,711,364 - PfGW456L13_1549 0.26 -1.6
1,711,369 + PfGW456L13_1549 0.27 +0.3
1,711,369 + PfGW456L13_1549 0.27 +0.4
1,711,369 + PfGW456L13_1549 0.27 -1.0
1,711,369 + PfGW456L13_1549 0.27 +0.0
1,711,369 + PfGW456L13_1549 0.27 +0.6
1,711,369 + PfGW456L13_1549 0.27 +0.7
1,711,369 + PfGW456L13_1549 0.27 +0.6
1,711,370 - PfGW456L13_1549 0.27 -2.3
1,711,370 - PfGW456L13_1549 0.27 -0.1
1,711,370 - PfGW456L13_1549 0.27 -0.4
1,711,370 - PfGW456L13_1549 0.27 +0.7
1,711,370 - PfGW456L13_1549 0.27 -1.6
1,711,370 - PfGW456L13_1549 0.27 -2.3
1,711,370 - PfGW456L13_1549 0.27 -1.1
1,711,370 - PfGW456L13_1549 0.27 +0.6
1,711,747 + PfGW456L13_1549 0.55 +0.9
1,711,747 + PfGW456L13_1549 0.55 -1.1
1,711,747 + PfGW456L13_1549 0.55 -0.1
1,711,747 + PfGW456L13_1549 0.55 -1.5
1,711,747 + PfGW456L13_1549 0.55 -1.1
1,711,748 - PfGW456L13_1549 0.55 -0.7
1,711,951 + PfGW456L13_1549 0.70 -0.0
1,711,952 - PfGW456L13_1549 0.70 -0.2
1,711,952 - PfGW456L13_1549 0.70 -1.4
1,711,952 - PfGW456L13_1549 0.70 +1.3
1,711,952 - PfGW456L13_1549 0.70 -0.1
1,711,952 - PfGW456L13_1549 0.70 -2.0
1,711,952 - PfGW456L13_1549 0.70 -0.5
1,711,981 + PfGW456L13_1549 0.72 +0.1
1,711,981 + PfGW456L13_1549 0.72 -1.1
1,711,982 - PfGW456L13_1549 0.72 -2.4
1,712,030 - PfGW456L13_1549 0.76 +1.1
1,712,097 + PfGW456L13_1549 0.81 -1.1
1,712,097 + PfGW456L13_1549 0.81 -1.6
1,712,097 + PfGW456L13_1549 0.81 -0.7
1,712,097 + PfGW456L13_1549 0.81 -0.3
1,712,098 - PfGW456L13_1549 0.81 +0.6
1,712,098 - PfGW456L13_1549 0.81 +0.0
1,712,098 - PfGW456L13_1549 0.81 -0.1
1,712,098 - PfGW456L13_1549 0.81 -0.6
1,712,310 + -0.2
1,712,311 - -0.7
1,712,311 - -0.8
1,712,325 + -1.5
1,712,325 + +1.0
1,712,325 + +1.3
1,712,326 - -0.7
1,712,442 + -0.6
1,712,442 + -0.5
1,712,442 + +1.2
1,712,442 + +0.0
1,712,442 + +0.7
1,712,442 + +1.2
1,712,442 + +0.7
1,712,442 + -0.8
1,712,442 + +0.0
1,713,257 + -0.9
1,713,258 - +0.1
1,713,310 + PfGW456L13_1551 0.15 -2.3
1,713,319 + PfGW456L13_1551 0.17 +0.4
1,713,320 - PfGW456L13_1551 0.17 -1.1
1,713,320 - PfGW456L13_1551 0.17 -1.0
1,713,321 + PfGW456L13_1551 0.17 -2.4
1,713,322 - PfGW456L13_1551 0.17 -0.4

Or see this region's nucleotide sequence