Experiment: D-Galacturonic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_04205 and PS417_04210 are separated by 11 nucleotides PS417_04210 and PS417_04215 are separated by 189 nucleotides
PS417_04205: PS417_04205 - D-galacturonate transporter (MFS superfamily) <small>(from data)</small>, at 942,350 to 943,714
_04205
PS417_04210: PS417_04210 - Galactarate dehydratase (EC 4.2.1.42) <small>(from data)</small>, at 943,726 to 945,279
_04210
PS417_04215: PS417_04215 - malate transporter, at 945,469 to 946,410
_04215
Position (kb) 943
944
945
946 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 942.791 kb on - strand, within PS417_04205 at 942.803 kb on + strand, within PS417_04205 at 942.848 kb on + strand, within PS417_04205 at 943.055 kb on + strand, within PS417_04205 at 943.055 kb on + strand, within PS417_04205 at 943.055 kb on + strand, within PS417_04205 at 943.056 kb on - strand, within PS417_04205 at 943.056 kb on - strand, within PS417_04205 at 943.098 kb on - strand, within PS417_04205 at 943.142 kb on - strand, within PS417_04205 at 943.157 kb on + strand, within PS417_04205 at 943.358 kb on + strand, within PS417_04205 at 943.541 kb on + strand, within PS417_04205 at 943.542 kb on - strand, within PS417_04205 at 943.542 kb on - strand, within PS417_04205 at 943.620 kb on - strand at 943.650 kb on + strand at 943.651 kb on - strand at 943.651 kb on - strand at 943.651 kb on - strand at 943.651 kb on - strand at 943.651 kb on - strand at 943.651 kb on - strand at 943.939 kb on + strand, within PS417_04210 at 944.282 kb on - strand, within PS417_04210 at 944.282 kb on - strand, within PS417_04210 at 944.282 kb on - strand, within PS417_04210 at 944.282 kb on - strand, within PS417_04210 at 944.696 kb on - strand, within PS417_04210 at 944.761 kb on + strand, within PS417_04210 at 944.762 kb on - strand, within PS417_04210 at 945.185 kb on - strand at 945.401 kb on - strand at 945.434 kb on - strand at 945.441 kb on + strand at 945.682 kb on + strand, within PS417_04215 at 945.766 kb on + strand, within PS417_04215 at 945.766 kb on + strand, within PS417_04215 at 945.766 kb on + strand, within PS417_04215 at 945.767 kb on - strand, within PS417_04215 at 945.767 kb on - strand, within PS417_04215 at 945.767 kb on - strand, within PS417_04215 at 945.767 kb on - strand, within PS417_04215 at 945.767 kb on - strand, within PS417_04215 at 945.767 kb on - strand, within PS417_04215 at 945.768 kb on + strand, within PS417_04215 at 945.829 kb on + strand, within PS417_04215 at 945.886 kb on + strand, within PS417_04215 at 945.887 kb on - strand, within PS417_04215 at 945.920 kb on - strand, within PS417_04215 at 945.920 kb on - strand, within PS417_04215 at 946.252 kb on + strand, within PS417_04215 at 946.252 kb on + strand, within PS417_04215 at 946.253 kb on - strand, within PS417_04215
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galacturonic Acid (C) remove 942,791 - PS417_04205 0.32 -1.9 942,803 + PS417_04205 0.33 +0.2 942,848 + PS417_04205 0.36 -3.2 943,055 + PS417_04205 0.52 -1.7 943,055 + PS417_04205 0.52 -0.5 943,055 + PS417_04205 0.52 -2.2 943,056 - PS417_04205 0.52 -1.5 943,056 - PS417_04205 0.52 -0.1 943,098 - PS417_04205 0.55 -2.1 943,142 - PS417_04205 0.58 -1.6 943,157 + PS417_04205 0.59 -2.5 943,358 + PS417_04205 0.74 -0.8 943,541 + PS417_04205 0.87 -0.6 943,542 - PS417_04205 0.87 -3.1 943,542 - PS417_04205 0.87 -2.9 943,620 - -3.1 943,650 + -1.9 943,651 - -2.0 943,651 - -3.0 943,651 - -1.9 943,651 - -2.4 943,651 - +0.6 943,651 - -2.0 943,939 + PS417_04210 0.14 -1.6 944,282 - PS417_04210 0.36 -0.4 944,282 - PS417_04210 0.36 -1.8 944,282 - PS417_04210 0.36 -0.4 944,282 - PS417_04210 0.36 +1.8 944,696 - PS417_04210 0.62 -2.1 944,761 + PS417_04210 0.67 -1.2 944,762 - PS417_04210 0.67 -1.6 945,185 - -2.3 945,401 - +0.8 945,434 - +0.5 945,441 + -0.3 945,682 + PS417_04215 0.23 -0.3 945,766 + PS417_04215 0.32 -0.7 945,766 + PS417_04215 0.32 -1.1 945,766 + PS417_04215 0.32 +0.3 945,767 - PS417_04215 0.32 -1.4 945,767 - PS417_04215 0.32 -0.6 945,767 - PS417_04215 0.32 -1.2 945,767 - PS417_04215 0.32 -1.0 945,767 - PS417_04215 0.32 -0.8 945,767 - PS417_04215 0.32 -1.4 945,768 + PS417_04215 0.32 +0.6 945,829 + PS417_04215 0.38 +0.8 945,886 + PS417_04215 0.44 +0.5 945,887 - PS417_04215 0.44 -0.4 945,920 - PS417_04215 0.48 +0.1 945,920 - PS417_04215 0.48 -0.3 946,252 + PS417_04215 0.83 -0.3 946,252 + PS417_04215 0.83 -0.5 946,253 - PS417_04215 0.83 -0.4
Or see this region's nucleotide sequence