Experiment: D-Galacturonic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_04190 and PS417_04195 are separated by 234 nucleotides PS417_04195 and PS417_04200 are separated by 54 nucleotides
PS417_04190: PS417_04190 - phosphatidylcholine-hydrolyzing phospholipase, at 938,447 to 939,604
_04190
PS417_04195: PS417_04195 - 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) <small>(from data)</small>, at 939,839 to 940,750
_04195
PS417_04200: PS417_04200 - 2-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26) <small>(from data)</small>, at 940,805 to 942,250
_04200
Position (kb) 939
940
941 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 938.912 kb on + strand, within PS417_04190 at 938.977 kb on - strand, within PS417_04190 at 939.057 kb on + strand, within PS417_04190 at 939.187 kb on + strand, within PS417_04190 at 939.187 kb on + strand, within PS417_04190 at 939.187 kb on + strand, within PS417_04190 at 939.187 kb on + strand, within PS417_04190 at 939.188 kb on - strand, within PS417_04190 at 939.322 kb on + strand, within PS417_04190 at 939.323 kb on - strand, within PS417_04190 at 939.323 kb on - strand, within PS417_04190 at 939.348 kb on - strand, within PS417_04190 at 939.348 kb on - strand, within PS417_04190 at 939.400 kb on - strand, within PS417_04190 at 939.400 kb on - strand, within PS417_04190 at 939.400 kb on - strand, within PS417_04190 at 939.433 kb on - strand, within PS417_04190 at 939.433 kb on - strand, within PS417_04190 at 939.607 kb on + strand at 939.607 kb on + strand at 939.608 kb on - strand at 939.608 kb on - strand at 939.608 kb on - strand at 939.618 kb on + strand at 939.618 kb on + strand at 939.618 kb on + strand at 939.618 kb on + strand at 939.618 kb on + strand at 939.618 kb on + strand at 939.618 kb on + strand at 939.619 kb on - strand at 939.619 kb on - strand at 939.619 kb on - strand at 939.619 kb on - strand at 939.619 kb on - strand at 939.672 kb on + strand at 939.673 kb on - strand at 939.673 kb on - strand at 939.837 kb on + strand at 939.838 kb on - strand at 939.936 kb on - strand, within PS417_04195 at 940.179 kb on - strand, within PS417_04195 at 940.179 kb on - strand, within PS417_04195 at 940.374 kb on + strand, within PS417_04195 at 940.404 kb on - strand, within PS417_04195 at 940.404 kb on - strand, within PS417_04195 at 940.470 kb on - strand, within PS417_04195 at 940.517 kb on + strand, within PS417_04195 at 940.707 kb on - strand at 940.758 kb on - strand at 940.758 kb on - strand at 940.758 kb on - strand at 940.758 kb on - strand at 940.758 kb on - strand at 940.758 kb on - strand at 940.832 kb on + strand at 940.832 kb on + strand at 940.832 kb on + strand at 940.832 kb on + strand at 940.833 kb on - strand at 940.833 kb on - strand at 940.833 kb on - strand at 940.833 kb on - strand at 941.131 kb on + strand, within PS417_04200 at 941.178 kb on - strand, within PS417_04200 at 941.178 kb on - strand, within PS417_04200 at 941.208 kb on + strand, within PS417_04200 at 941.208 kb on + strand, within PS417_04200 at 941.209 kb on - strand, within PS417_04200 at 941.209 kb on - strand, within PS417_04200
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galacturonic Acid (C) remove 938,912 + PS417_04190 0.40 -1.4 938,977 - PS417_04190 0.46 -0.6 939,057 + PS417_04190 0.53 +0.0 939,187 + PS417_04190 0.64 -0.5 939,187 + PS417_04190 0.64 +0.7 939,187 + PS417_04190 0.64 -0.0 939,187 + PS417_04190 0.64 -1.0 939,188 - PS417_04190 0.64 +1.5 939,322 + PS417_04190 0.76 -1.2 939,323 - PS417_04190 0.76 -0.4 939,323 - PS417_04190 0.76 -0.3 939,348 - PS417_04190 0.78 -0.4 939,348 - PS417_04190 0.78 -1.0 939,400 - PS417_04190 0.82 -0.5 939,400 - PS417_04190 0.82 -0.6 939,400 - PS417_04190 0.82 -1.4 939,433 - PS417_04190 0.85 +0.1 939,433 - PS417_04190 0.85 -0.1 939,607 + -0.6 939,607 + -1.1 939,608 - -1.5 939,608 - +0.2 939,608 - -0.2 939,618 + -0.7 939,618 + -0.6 939,618 + -1.3 939,618 + -0.4 939,618 + +0.7 939,618 + -0.1 939,618 + -0.4 939,619 - -1.8 939,619 - +0.1 939,619 - +0.2 939,619 - -1.8 939,619 - -0.8 939,672 + -0.1 939,673 - +0.9 939,673 - -4.0 939,837 + -2.6 939,838 - -3.5 939,936 - PS417_04195 0.11 -1.1 940,179 - PS417_04195 0.37 -0.5 940,179 - PS417_04195 0.37 -2.7 940,374 + PS417_04195 0.59 -2.5 940,404 - PS417_04195 0.62 -1.1 940,404 - PS417_04195 0.62 -2.2 940,470 - PS417_04195 0.69 -3.0 940,517 + PS417_04195 0.74 -4.0 940,707 - -0.9 940,758 - +0.2 940,758 - -1.8 940,758 - -0.4 940,758 - -2.0 940,758 - -2.0 940,758 - -0.5 940,832 + -1.9 940,832 + -2.0 940,832 + -2.8 940,832 + -2.8 940,833 - +0.2 940,833 - -2.2 940,833 - -2.5 940,833 - -1.6 941,131 + PS417_04200 0.23 -1.5 941,178 - PS417_04200 0.26 -3.4 941,178 - PS417_04200 0.26 -1.8 941,208 + PS417_04200 0.28 -0.6 941,208 + PS417_04200 0.28 -3.2 941,209 - PS417_04200 0.28 -1.7 941,209 - PS417_04200 0.28 -2.3
Or see this region's nucleotide sequence