Experiment: D-Galacturonic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_21995 and PS417_22000 are separated by 169 nucleotides PS417_22000 and PS417_22005 are separated by 14 nucleotides PS417_22005 and PS417_22010 are separated by 141 nucleotides
PS417_21995: PS417_21995 - hypothetical protein, at 4,769,813 to 4,770,046
_21995
PS417_22000: PS417_22000 - glutathione S-transferase, at 4,770,216 to 4,770,848
_22000
PS417_22005: PS417_22005 - epimerase, at 4,770,863 to 4,771,600
_22005
PS417_22010: PS417_22010 - MFS transporter, at 4,771,742 to 4,773,154
_22010
Position (kb) 4770
4771
4772 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4769.994 kb on + strand, within PS417_21995 at 4769.995 kb on - strand, within PS417_21995 at 4769.995 kb on - strand, within PS417_21995 at 4769.995 kb on - strand, within PS417_21995 at 4770.000 kb on + strand, within PS417_21995 at 4770.001 kb on - strand, within PS417_21995 at 4770.010 kb on - strand, within PS417_21995 at 4770.053 kb on - strand at 4770.107 kb on + strand at 4770.113 kb on + strand at 4770.114 kb on - strand at 4770.182 kb on + strand at 4770.182 kb on + strand at 4770.245 kb on + strand at 4770.245 kb on + strand at 4770.528 kb on - strand, within PS417_22000 at 4770.588 kb on + strand, within PS417_22000 at 4770.679 kb on - strand, within PS417_22000 at 4770.730 kb on + strand, within PS417_22000 at 4770.731 kb on - strand, within PS417_22000 at 4770.786 kb on + strand at 4770.787 kb on - strand at 4770.787 kb on - strand at 4770.790 kb on - strand at 4770.790 kb on - strand at 4770.847 kb on - strand at 4770.858 kb on + strand at 4770.879 kb on + strand at 4771.139 kb on + strand, within PS417_22005 at 4771.140 kb on - strand, within PS417_22005 at 4771.310 kb on + strand, within PS417_22005 at 4771.311 kb on - strand, within PS417_22005 at 4771.311 kb on - strand, within PS417_22005 at 4771.596 kb on - strand at 4771.596 kb on - strand at 4771.884 kb on - strand, within PS417_22010 at 4771.904 kb on + strand, within PS417_22010 at 4771.904 kb on + strand, within PS417_22010 at 4771.904 kb on + strand, within PS417_22010 at 4771.905 kb on - strand, within PS417_22010 at 4771.905 kb on - strand, within PS417_22010 at 4771.906 kb on + strand, within PS417_22010 at 4771.906 kb on + strand, within PS417_22010 at 4771.906 kb on + strand, within PS417_22010 at 4771.907 kb on - strand, within PS417_22010 at 4772.090 kb on + strand, within PS417_22010 at 4772.201 kb on + strand, within PS417_22010 at 4772.202 kb on - strand, within PS417_22010 at 4772.380 kb on + strand, within PS417_22010 at 4772.380 kb on + strand, within PS417_22010
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galacturonic Acid (C) remove 4,769,994 + PS417_21995 0.77 +0.1 4,769,995 - PS417_21995 0.78 -0.2 4,769,995 - PS417_21995 0.78 -2.3 4,769,995 - PS417_21995 0.78 -0.3 4,770,000 + PS417_21995 0.80 -0.5 4,770,001 - PS417_21995 0.80 +0.1 4,770,010 - PS417_21995 0.84 -0.4 4,770,053 - -1.5 4,770,107 + +0.0 4,770,113 + +0.2 4,770,114 - -0.0 4,770,182 + -0.6 4,770,182 + -0.1 4,770,245 + +2.1 4,770,245 + -0.1 4,770,528 - PS417_22000 0.49 -1.5 4,770,588 + PS417_22000 0.59 -0.2 4,770,679 - PS417_22000 0.73 +0.7 4,770,730 + PS417_22000 0.81 +0.5 4,770,731 - PS417_22000 0.81 +0.5 4,770,786 + +0.2 4,770,787 - +0.1 4,770,787 - +0.0 4,770,790 - +0.4 4,770,790 - -0.3 4,770,847 - -0.4 4,770,858 + -0.3 4,770,879 + +0.3 4,771,139 + PS417_22005 0.37 +0.5 4,771,140 - PS417_22005 0.38 +0.7 4,771,310 + PS417_22005 0.61 +0.2 4,771,311 - PS417_22005 0.61 +0.6 4,771,311 - PS417_22005 0.61 -1.7 4,771,596 - +0.5 4,771,596 - +0.1 4,771,884 - PS417_22010 0.10 +0.3 4,771,904 + PS417_22010 0.11 +1.2 4,771,904 + PS417_22010 0.11 +0.8 4,771,904 + PS417_22010 0.11 +0.8 4,771,905 - PS417_22010 0.12 +0.6 4,771,905 - PS417_22010 0.12 +0.1 4,771,906 + PS417_22010 0.12 +0.5 4,771,906 + PS417_22010 0.12 -0.3 4,771,906 + PS417_22010 0.12 -0.7 4,771,907 - PS417_22010 0.12 +0.7 4,772,090 + PS417_22010 0.25 -0.7 4,772,201 + PS417_22010 0.32 +0.7 4,772,202 - PS417_22010 0.33 +0.3 4,772,380 + PS417_22010 0.45 +0.3 4,772,380 + PS417_22010 0.45 -0.5
Or see this region's nucleotide sequence