Strain Fitness in Pseudomonas simiae WCS417 around PS417_17360

Experiment: D-Galacturonic Acid (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_17355 and PS417_17360 are separated by 232 nucleotidesPS417_17360 and PS417_17365 are separated by 3 nucleotidesPS417_17365 and PS417_17370 are separated by 51 nucleotides PS417_17355: PS417_17355 - porin, at 3,791,092 to 3,792,354 _17355 PS417_17360: PS417_17360 - D-galacturonate dehydrogenase (EC 1.1.1.203) (from data), at 3,792,587 to 3,793,411 _17360 PS417_17365: PS417_17365 - galactaro-1,5-lactonase (from data), at 3,793,415 to 3,794,290 _17365 PS417_17370: PS417_17370 - C4-dicarboxylate ABC transporter, at 3,794,342 to 3,795,304 _17370 Position (kb) 3792 3793 3794Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3791.791 kb on + strand, within PS417_17355at 3791.791 kb on + strand, within PS417_17355at 3791.792 kb on - strand, within PS417_17355at 3791.944 kb on + strand, within PS417_17355at 3791.962 kb on + strand, within PS417_17355at 3791.963 kb on - strand, within PS417_17355at 3791.963 kb on - strand, within PS417_17355at 3792.046 kb on + strand, within PS417_17355at 3792.047 kb on - strand, within PS417_17355at 3792.047 kb on - strand, within PS417_17355at 3792.149 kb on - strand, within PS417_17355at 3792.167 kb on + strand, within PS417_17355at 3792.167 kb on + strand, within PS417_17355at 3792.167 kb on + strand, within PS417_17355at 3792.460 kb on - strandat 3792.541 kb on - strandat 3792.893 kb on - strand, within PS417_17360at 3792.896 kb on + strand, within PS417_17360at 3792.896 kb on + strand, within PS417_17360at 3792.896 kb on + strand, within PS417_17360at 3792.897 kb on - strand, within PS417_17360at 3792.897 kb on - strand, within PS417_17360at 3792.966 kb on - strand, within PS417_17360at 3792.966 kb on - strandat 3792.966 kb on - strand, within PS417_17360at 3793.016 kb on + strand, within PS417_17360at 3793.016 kb on + strand, within PS417_17360at 3793.016 kb on + strand, within PS417_17360at 3793.016 kb on + strand, within PS417_17360at 3793.017 kb on - strand, within PS417_17360at 3793.073 kb on + strand, within PS417_17360at 3793.194 kb on - strand, within PS417_17360at 3793.223 kb on + strand, within PS417_17360at 3793.901 kb on + strand, within PS417_17365at 3793.902 kb on - strand, within PS417_17365at 3793.902 kb on - strand, within PS417_17365at 3793.902 kb on - strand, within PS417_17365at 3794.127 kb on + strand, within PS417_17365at 3794.127 kb on + strand, within PS417_17365at 3794.288 kb on + strandat 3794.312 kb on - strandat 3794.320 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Galacturonic Acid (C)
remove
3,791,791 + PS417_17355 0.55 -0.3
3,791,791 + PS417_17355 0.55 -0.2
3,791,792 - PS417_17355 0.55 -0.1
3,791,944 + PS417_17355 0.67 -0.3
3,791,962 + PS417_17355 0.69 -1.0
3,791,963 - PS417_17355 0.69 -2.1
3,791,963 - PS417_17355 0.69 +0.0
3,792,046 + PS417_17355 0.76 +0.1
3,792,047 - PS417_17355 0.76 +0.3
3,792,047 - PS417_17355 0.76 +0.7
3,792,149 - PS417_17355 0.84 -0.1
3,792,167 + PS417_17355 0.85 -0.5
3,792,167 + PS417_17355 0.85 +0.6
3,792,167 + PS417_17355 0.85 +0.1
3,792,460 - +2.0
3,792,541 - -1.3
3,792,893 - PS417_17360 0.37 -2.2
3,792,896 + PS417_17360 0.37 -1.3
3,792,896 + PS417_17360 0.37 -3.2
3,792,896 + PS417_17360 0.37 -2.2
3,792,897 - PS417_17360 0.38 +0.7
3,792,897 - PS417_17360 0.38 -2.0
3,792,966 - PS417_17360 0.46 -1.2
3,792,966 - -0.3
3,792,966 - PS417_17360 0.46 -1.9
3,793,016 + PS417_17360 0.52 -2.3
3,793,016 + PS417_17360 0.52 +0.7
3,793,016 + PS417_17360 0.52 -2.6
3,793,016 + PS417_17360 0.52 -2.4
3,793,017 - PS417_17360 0.52 -1.9
3,793,073 + PS417_17360 0.59 -2.0
3,793,194 - PS417_17360 0.74 -2.2
3,793,223 + PS417_17360 0.77 -1.7
3,793,901 + PS417_17365 0.55 -1.6
3,793,902 - PS417_17365 0.56 -1.0
3,793,902 - PS417_17365 0.56 +0.2
3,793,902 - PS417_17365 0.56 -1.6
3,794,127 + PS417_17365 0.81 -1.1
3,794,127 + PS417_17365 0.81 -2.2
3,794,288 + +0.0
3,794,312 - -2.1
3,794,320 - -1.5

Or see this region's nucleotide sequence