Experiment: D-Galacturonic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_17355 and PS417_17360 are separated by 232 nucleotides PS417_17360 and PS417_17365 are separated by 3 nucleotides PS417_17365 and PS417_17370 are separated by 51 nucleotides
PS417_17355: PS417_17355 - porin, at 3,791,092 to 3,792,354
_17355
PS417_17360: PS417_17360 - D-galacturonate dehydrogenase (EC 1.1.1.203) (from data) , at 3,792,587 to 3,793,411
_17360
PS417_17365: PS417_17365 - galactaro-1,5-lactonase (from data) , at 3,793,415 to 3,794,290
_17365
PS417_17370: PS417_17370 - C4-dicarboxylate ABC transporter, at 3,794,342 to 3,795,304
_17370
Position (kb)
3792
3793
3794 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3791.791 kb on + strand, within PS417_17355 at 3791.791 kb on + strand, within PS417_17355 at 3791.792 kb on - strand, within PS417_17355 at 3791.944 kb on + strand, within PS417_17355 at 3791.962 kb on + strand, within PS417_17355 at 3791.963 kb on - strand, within PS417_17355 at 3791.963 kb on - strand, within PS417_17355 at 3792.046 kb on + strand, within PS417_17355 at 3792.047 kb on - strand, within PS417_17355 at 3792.047 kb on - strand, within PS417_17355 at 3792.149 kb on - strand, within PS417_17355 at 3792.167 kb on + strand, within PS417_17355 at 3792.167 kb on + strand, within PS417_17355 at 3792.167 kb on + strand, within PS417_17355 at 3792.460 kb on - strand at 3792.541 kb on - strand at 3792.893 kb on - strand, within PS417_17360 at 3792.896 kb on + strand, within PS417_17360 at 3792.896 kb on + strand, within PS417_17360 at 3792.896 kb on + strand, within PS417_17360 at 3792.897 kb on - strand, within PS417_17360 at 3792.897 kb on - strand, within PS417_17360 at 3792.966 kb on - strand, within PS417_17360 at 3792.966 kb on - strand at 3792.966 kb on - strand, within PS417_17360 at 3793.016 kb on + strand, within PS417_17360 at 3793.016 kb on + strand, within PS417_17360 at 3793.016 kb on + strand, within PS417_17360 at 3793.016 kb on + strand, within PS417_17360 at 3793.017 kb on - strand, within PS417_17360 at 3793.073 kb on + strand, within PS417_17360 at 3793.194 kb on - strand, within PS417_17360 at 3793.223 kb on + strand, within PS417_17360 at 3793.901 kb on + strand, within PS417_17365 at 3793.902 kb on - strand, within PS417_17365 at 3793.902 kb on - strand, within PS417_17365 at 3793.902 kb on - strand, within PS417_17365 at 3794.127 kb on + strand, within PS417_17365 at 3794.127 kb on + strand, within PS417_17365 at 3794.288 kb on + strand at 3794.312 kb on - strand at 3794.320 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galacturonic Acid (C) remove 3,791,791 + PS417_17355 0.55 -0.3 3,791,791 + PS417_17355 0.55 -0.2 3,791,792 - PS417_17355 0.55 -0.1 3,791,944 + PS417_17355 0.67 -0.3 3,791,962 + PS417_17355 0.69 -1.0 3,791,963 - PS417_17355 0.69 -2.1 3,791,963 - PS417_17355 0.69 +0.0 3,792,046 + PS417_17355 0.76 +0.1 3,792,047 - PS417_17355 0.76 +0.3 3,792,047 - PS417_17355 0.76 +0.7 3,792,149 - PS417_17355 0.84 -0.1 3,792,167 + PS417_17355 0.85 -0.5 3,792,167 + PS417_17355 0.85 +0.6 3,792,167 + PS417_17355 0.85 +0.1 3,792,460 - +2.0 3,792,541 - -1.3 3,792,893 - PS417_17360 0.37 -2.2 3,792,896 + PS417_17360 0.37 -1.3 3,792,896 + PS417_17360 0.37 -3.2 3,792,896 + PS417_17360 0.37 -2.2 3,792,897 - PS417_17360 0.38 +0.7 3,792,897 - PS417_17360 0.38 -2.0 3,792,966 - PS417_17360 0.46 -1.2 3,792,966 - -0.3 3,792,966 - PS417_17360 0.46 -1.9 3,793,016 + PS417_17360 0.52 -2.3 3,793,016 + PS417_17360 0.52 +0.7 3,793,016 + PS417_17360 0.52 -2.6 3,793,016 + PS417_17360 0.52 -2.4 3,793,017 - PS417_17360 0.52 -1.9 3,793,073 + PS417_17360 0.59 -2.0 3,793,194 - PS417_17360 0.74 -2.2 3,793,223 + PS417_17360 0.77 -1.7 3,793,901 + PS417_17365 0.55 -1.6 3,793,902 - PS417_17365 0.56 -1.0 3,793,902 - PS417_17365 0.56 +0.2 3,793,902 - PS417_17365 0.56 -1.6 3,794,127 + PS417_17365 0.81 -1.1 3,794,127 + PS417_17365 0.81 -2.2 3,794,288 + +0.0 3,794,312 - -2.1 3,794,320 - -1.5
Or see this region's nucleotide sequence